Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c20_2470 Physcomitrium patens HOM05D002585 ORTHO05D002917 0.0e+00 1103.6 542 100.0
Mapoly0093s0034 Marchantia polymorpha HOM05D002585 ORTHO05D002917 5.3e-208 728.0 458 74.0
AagrBONN_evm.TU.Sc2ySwM_344.424 Anthoceros agrestis HOM05D002585 ORTHO05D002917 2.6e-207 725.7 460 73.7
Cfa026822 Carpinus fangiana HOM05D002585 ORTHO05D002917 4.2e-48 196.8 481 31.6
CANSAT80G1527 Cannabis sativa HOM05D002585 ORTHO05D002917 2.3e-38 164.5 381 26.8
ECA233G1422 Erigeron canadensis HOM05D002585 ORTHO05D002917 6.8e-38 162.9 358 29.1
CANSAT80G2890 Cannabis sativa HOM05D002585 ORTHO05D002917 2.6e-37 161.0 381 26.8
CANSAT35G1791 Cannabis sativa HOM05D002585 ORTHO05D002917 7.5e-37 159.5 382 27.7
Phvul.007G152500 Phaseolus vulgaris HOM05D002585 ORTHO05D002917 9.8e-37 159.1 352 28.7
FvH4_6g16930 Fragaria vesca HOM05D002585 ORTHO05D002917 1.3e-36 158.7 387 27.9
FAN14G4746 Fragaria x ananassa HOM05D002585 ORTHO05D002917 1.3e-36 158.7 387 27.9
Sed0005893 Sechium edule HOM05D002585 ORTHO05D002917 1.7e-36 158.3 390 26.9
CSS0049154 Camellia sinensis var. sinensis HOM05D002585 ORTHO05D002917 2.2e-36 157.9 386 26.9
Medtr0417s0020 Medicago truncatula HOM05D002585 ORTHO05D002917 2.8e-36 157.5 352 28.1
TWI53G0795 Tripterygium wilfordii HOM05D002585 ORTHO05D002917 3.7e-36 157.1 382 27.2
FAN05G4117 Fragaria x ananassa HOM05D002585 ORTHO05D002917 4.8e-36 156.8 359 28.7
Prupe.7G124800 Prunus persica HOM05D002585 ORTHO05D002917 4.8e-36 156.8 384 27.6
PSO063G7003 Papaver somniferum HOM05D002585 ORTHO05D002917 6.3e-36 156.4 358 27.7
Sed0002653 Sechium edule HOM05D002585 ORTHO05D002917 8.3e-36 156.0 353 29.2
FAN05G4263 Fragaria x ananassa HOM05D002585 ORTHO05D002917 1.1e-35 155.6 359 28.4
vmacro07324 Vaccinium macrocarpon HOM05D002585 ORTHO05D002917 1.1e-35 155.6 356 28.4
Cfa021472 Carpinus fangiana HOM05D002585 ORTHO05D002917 1.4e-35 155.2 359 29.2
CiPaw.09G003100 Carya illinoinensis HOM05D002585 ORTHO05D002917 1.4e-35 155.2 358 28.2
FAN02G4184 Fragaria x ananassa HOM05D002585 ORTHO05D002917 1.4e-35 155.2 358 28.5
Actinidia28922 Actinidia chinensis HOM05D002585 ORTHO05D002917 1.8e-35 154.8 359 28.4
CsaV3_6G040130 Cucumis sativus L. HOM05D002585 ORTHO05D002917 1.8e-35 154.8 356 28.4
Lalb_Chr21g0315161 Lupinus albus HOM05D002585 ORTHO05D002917 2.4e-35 154.5 412 27.9
Mapoly0140s0025 Marchantia polymorpha HOM05D002585 ORTHO05D002917 2.4e-35 154.5 462 29.2
Medtr3g035970 Medicago truncatula HOM05D002585 ORTHO05D002917 2.4e-35 154.5 351 27.6
THA.LOC104825825 Tarenaya hassleriana HOM05D002585 ORTHO05D002917 4.1e-35 153.7 386 27.7
BcaB01g00304 Brassica carinata HOM05D002585 ORTHO05D002917 5.4e-35 153.3 355 27.0
MELO3C024486.2 Cucumis melo HOM05D002585 ORTHO05D002917 5.4e-35 153.3 383 26.4
Thhalv10010120m.g Eutrema salsugineum HOM05D002585 ORTHO05D002917 5.4e-35 153.3 358 27.4
QL07p042117 Quercus lobata HOM05D002585 ORTHO05D002917 5.4e-35 153.3 360 27.8
Manes.08G013700 Manihot esculenta HOM05D002585 ORTHO05D002917 7.0e-35 152.9 358 28.2
Psat6g076360 Pisum sativum HOM05D002585 ORTHO05D002917 7.0e-35 152.9 404 26.5
Carub.0005s1971 Capsella rubella HOM05D002585 ORTHO05D002917 1.6e-34 151.8 358 27.4
RcHm_v2.0_Chr5g0018301 Rosa chinensis HOM05D002585 ORTHO05D002917 1.6e-34 151.8 387 27.4
Hund20555 Selenicereus undatus HOM05D002585 ORTHO05D002917 1.6e-34 151.8 357 28.9
CARHR163130 Cardamine hirsuta HOM05D002585 ORTHO05D002917 2.0e-34 151.4 357 27.7
AUR62026959 Chenopodium quinoa HOM05D002585 ORTHO05D002917 2.0e-34 151.4 357 28.6
Gohir.D04G108400 Gossypium hirsutum HOM05D002585 ORTHO05D002917 2.0e-34 151.4 355 27.3
Aa31LG10G8350 Aethionema arabicum HOM05D002585 ORTHO05D002917 2.7e-34 151.0 357 28.0
AT3G53180 Arabidopsis thaliana HOM05D002585 ORTHO05D002917 2.7e-34 151.0 358 27.4
A07p21410 Brassica napus HOM05D002585 ORTHO05D002917 2.7e-34 151.0 365 26.8
AUR62041382 Chenopodium quinoa HOM05D002585 ORTHO05D002917 2.7e-34 151.0 351 28.2
Glyma.10G060200 Glycine max HOM05D002585 ORTHO05D002917 2.7e-34 151.0 352 27.8
BolC6t37286H Brassica oleracea HOM05D002585 ORTHO05D002917 3.5e-34 150.6 355 26.8
BraA07t29828Z Brassica rapa HOM05D002585 ORTHO05D002917 3.5e-34 150.6 355 26.8
Medtr1g062470 Medicago truncatula HOM05D002585 ORTHO05D002917 3.5e-34 150.6 356 28.7
PSO339G5475 Papaver somniferum HOM05D002585 ORTHO05D002917 3.5e-34 150.6 358 26.5
RcHm_v2.0_Chr3g0470971 Rosa chinensis HOM05D002585 ORTHO05D002917 4.5e-34 150.2 387 27.4
BcaC08g44624 Brassica carinata HOM05D002585 ORTHO05D002917 5.9e-34 149.8 355 26.8
C06p21020 Brassica napus HOM05D002585 ORTHO05D002917 5.9e-34 149.8 355 26.8
Duzib093G2252 Durio zibethinus HOM05D002585 ORTHO05D002917 5.9e-34 149.8 383 26.6
Medtr1g062620 Medicago truncatula HOM05D002585 ORTHO05D002917 5.9e-34 149.8 352 26.7
COL.COLO4_26904 Corchorus olitorius HOM05D002585 ORTHO05D002917 7.7e-34 149.4 385 26.8
Gorai.009G412500 Gossypium raimondii HOM05D002585 ORTHO05D002917 7.7e-34 149.4 355 27.0
MSTRG.26675 Avicennia marina HOM05D002585 ORTHO05D002917 1.0e-33 149.1 356 27.0
Potri.006G121000 Populus trichocarpa HOM05D002585 ORTHO05D002917 1.0e-33 149.1 357 28.3
EL10Ac7g16696 Beta vulgaris HOM05D002585 ORTHO05D002917 1.3e-33 148.7 357 27.5
Zm00001eb046790 Zea mays HOM05D002585 ORTHO05D002917 1.3e-33 148.7 373 29.0
Manes.08G013600 Manihot esculenta HOM05D002585 ORTHO05D002917 1.7e-33 148.3 357 27.5
Ca_11569_v3 Cicer arietinum L. HOM05D002585 ORTHO05D002917 2.3e-33 147.9 352 27.3
Gohir.A04G069800 Gossypium hirsutum HOM05D002585 ORTHO05D002917 2.3e-33 147.9 355 26.8
Sed0022969 Sechium edule HOM05D002585 ORTHO05D002917 2.9e-33 147.5 373 28.4
GSVIVG01033692001 Vitis vinifera HOM05D002585 ORTHO05D002917 2.9e-33 147.5 386 27.5
Ah.15g091400 Amaranthus hybridus HOM05D002585 ORTHO05D002917 3.8e-33 147.1 357 27.7
Thecc.05G072300 Theobroma cacao HOM05D002585 ORTHO05D002917 3.8e-33 147.1 355 27.3
AL5G34060 Arabidopsis lyrata HOM05D002585 ORTHO05D002917 5.0e-33 146.7 355 26.5
Ciclev10011061m.g Citrus clementina HOM05D002585 ORTHO05D002917 5.0e-33 146.7 355 26.2
PGR004G2132 Punica granatum HOM05D002585 ORTHO05D002917 5.0e-33 146.7 382 26.4
SMO356G0713 Selaginella moellendorffii HOM05D002585 ORTHO05D002917 5.0e-33 146.7 468 27.1
Pp3c26_11640 Physcomitrium patens HOM05D002585 ORTHO05D002917 8.6e-33 146.0 402 28.9
Sed0026659 Sechium edule HOM05D002585 ORTHO05D002917 1.1e-32 145.6 383 25.8
Sopen10g033280 Solanum pennellii HOM05D002585 ORTHO05D002917 1.5e-32 145.2 358 26.8
Dinv35818 Davidia involucrata HOM05D002585 ORTHO05D002917 1.9e-32 144.8 353 28.0
Psat0s3029g0040 Pisum sativum HOM05D002585 ORTHO05D002917 1.9e-32 144.8 383 26.6
DCAR_015012 Daucus carota HOM05D002585 ORTHO05D002917 2.5e-32 144.4 355 26.2
ClCG04G009500 Citrullus lanatus HOM05D002585 ORTHO05D002917 3.2e-32 144.1 380 25.8
MELO3C024485.2 Cucumis melo HOM05D002585 ORTHO05D002917 3.2e-32 144.1 356 26.1
TAR369G0251 Trochodendron aralioides HOM05D002585 ORTHO05D002917 3.2e-32 144.1 358 26.0
HanXRQChr05g0144541 Helianthus annuus HOM05D002585 ORTHO05D002917 4.2e-32 143.7 359 27.3
HPP92_008392 Vanilla planifolia HOM05D002585 ORTHO05D002917 4.2e-32 143.7 356 27.8
ATR0043G008 Amborella trichopoda HOM05D002585 ORTHO05D002917 5.5e-32 143.3 358 27.7
CAN.G541.44 Capsicum annuum HOM05D002585 ORTHO05D002917 5.5e-32 143.3 355 27.3
Oeu041475.1 Olea europaea HOM05D002585 ORTHO05D002917 5.5e-32 143.3 382 25.9
Pp3c1_32960 Physcomitrium patens HOM05D002585 ORTHO05D002917 5.5e-32 143.3 354 27.7
Cc06_g04600 Coffea canephora HOM05D002585 ORTHO05D002917 7.2e-32 142.9 356 25.8
Hma1.2p1_0547F.1_g176480 Hydrangea macrophylla HOM05D002585 ORTHO05D002917 7.2e-32 142.9 358 26.5
Solyc10g083840.1 Solanum lycopersicum HOM05D002585 ORTHO05D002917 7.2e-32 142.9 355 26.5
Atru.chr8.1743 Acer truncatum HOM05D002585 ORTHO05D002917 9.5e-32 142.5 355 26.5
Eucgr.A01617 Eucalyptus grandis HOM05D002585 ORTHO05D002917 9.5e-32 142.5 362 27.3
Psat6g075720 Pisum sativum HOM05D002585 ORTHO05D002917 9.5e-32 142.5 352 26.4
SalBow5G3646 Salvia bowleyana HOM05D002585 ORTHO05D002917 9.5e-32 142.5 405 25.9
SalBow5G4367 Salvia bowleyana HOM05D002585 ORTHO05D002917 9.5e-32 142.5 405 25.7
Nitab4.5_0005208g0050 Nicotiana tabacum HOM05D002585 ORTHO05D002917 1.2e-31 142.1 352 26.1
Migut.L01723 Erythranthe guttata HOM05D002585 ORTHO05D002917 3.6e-31 140.6 384 25.3
Haze_19443 Corylus avellana HOM05D002585 ORTHO05D002917 4.7e-31 140.2 355 28.2
Lsat_1_v5_gn_8_145640 Lactuca sativa HOM05D002585 ORTHO05D002917 6.1e-31 139.8 358 28.2
Sed0005462 Sechium edule HOM05D002585 ORTHO05D002917 6.1e-31 139.8 350 26.3
CsaV3_6G040120 Cucumis sativus L. HOM05D002585 ORTHO05D002917 8.0e-31 139.4 353 25.8
Dinv37345 Davidia involucrata HOM05D002585 ORTHO05D002917 1.0e-30 139.0 364 26.4
PRCOL_00005521 Prasinoderma coloniale HOM05D002585 ORTHO05D002917 1.0e-30 139.0 391 28.4
Pp3c14_19260 Physcomitrium patens HOM05D002585 ORTHO05D002917 1.8e-30 138.3 383 27.2
Sed0020289 Sechium edule HOM05D002585 ORTHO05D002917 1.8e-30 138.3 353 26.9
Lj5g0002795 Lotus japonicus HOM05D002585 ORTHO05D002917 2.3e-30 137.9 381 26.0
Nn6g35210 Nelumbo nucifera HOM05D002585 ORTHO05D002917 5.2e-30 136.7 319 26.3
VMungo0720G3162 Vigna mungo HOM05D002585 ORTHO05D002917 1.2e-29 135.6 406 25.9
Nitab4.5_0000132g0480 Nicotiana tabacum HOM05D002585 ORTHO05D002917 1.5e-29 135.2 352 26.1
arahy.Tifrunner.gnm1.ann1.YR6AFM Arachis hypogaea HOM05D002585 ORTHO05D002917 1.3e-28 132.1 398 26.1
Medtr1g062430 Medicago truncatula HOM05D002585 ORTHO05D002917 1.7e-28 131.7 317 28.7
PGSC0003DMG400028276 Solanum tuberosum HOM05D002585 ORTHO05D002917 6.3e-28 129.8 331 26.6
ClCG04G009510 Citrullus lanatus HOM05D002585 ORTHO05D002917 1.4e-27 128.6 317 27.1
CAN.G1138.22 Capsicum annuum HOM05D002585 ORTHO05D002917 1.8e-27 128.3 353 23.2
Gohir.D01G129800 Gossypium hirsutum HOM05D002585 ORTHO05D002917 2.4e-27 127.9 357 25.8
Medtr1g062650 Medicago truncatula HOM05D002585 ORTHO05D002917 5.4e-27 126.7 360 25.3
arahy.Tifrunner.gnm1.ann1.SIB7C5 Arachis hypogaea HOM05D002585 ORTHO05D002917 7.0e-27 126.3 366 26.2
Aqoxy195s007 Aquilegia oxysepala HOM05D002585 ORTHO05D002917 1.2e-26 125.6 374 24.9
Aqoxy1G01087 Aquilegia oxysepala HOM05D002585 ORTHO05D002917 1.2e-26 125.6 374 24.9
Mapoly0010s0006 Marchantia polymorpha HOM05D002585 ORTHO05D002917 2.7e-26 124.4 363 25.6
unitig_8.g4719 Utricularia gibba HOM05D002585 ORTHO05D002917 2.7e-26 124.4 464 24.6
Sopen10g033020 Solanum pennellii HOM05D002585 ORTHO05D002917 4.5e-26 123.6 357 23.2
Rhsim03G0088700 Rhododendron simsii HOM05D002585 ORTHO05D002917 5.9e-26 123.2 410 23.7
PGSC0003DMG400028171 Solanum tuberosum HOM05D002585 ORTHO05D002917 7.8e-26 122.9 357 23.2
arahy.Tifrunner.gnm1.ann1.7YQ2TW Arachis hypogaea HOM05D002585 ORTHO05D002917 1.0e-25 122.5 398 25.6
FAN09G3171 Fragaria x ananassa HOM05D002585 ORTHO05D002917 2.3e-25 121.3 238 30.3
MBI17_g25733_MAGBIO Magnolia biondii HOM05D002585 ORTHO05D002917 2.3e-25 121.3 372 25.0
MD00G1214800 Malus domestica HOM05D002585 ORTHO05D002917 6.6e-25 119.8 218 29.8
Lj3A991G23 Lonicera japonica HOM05D002585 ORTHO05D002917 8.6e-25 119.4 346 25.4
Peaxi162Scf00110g00619 Petunia axillaris HOM05D002585 ORTHO05D002917 1.1e-24 119.0 296 27.0
Gorai.002G160800 Gossypium raimondii HOM05D002585 ORTHO05D002917 2.5e-24 117.9 355 25.4
SGA_v2.0_scaffold224G42925 Striga asiatica HOM05D002585 ORTHO05D002917 2.5e-24 117.9 422 24.2
Peaxi162Scf00163g00216 Petunia axillaris HOM05D002585 ORTHO05D002917 3.3e-24 117.5 359 24.0
arahy.Tifrunner.gnm1.ann1.7710RN Arachis hypogaea HOM05D002585 ORTHO05D002917 5.6e-24 116.7 366 25.7
QL07p042139 Quercus lobata HOM05D002585 ORTHO05D002917 7.3e-24 116.3 357 25.8
SHI27841 Sapria himalayana HOM05D002585 ORTHO05D002917 1.2e-23 115.5 337 24.6
SMO367G0811 Selaginella moellendorffii HOM05D002585 ORTHO05D002917 1.2e-23 115.5 353 24.6
PGSC0003DMG400028277 Solanum tuberosum HOM05D002585 ORTHO05D002917 8.0e-23 112.8 374 23.0
Peaxi162Scf00837g00009 Petunia axillaris HOM05D002585 ORTHO05D002917 1.0e-22 112.5 348 24.4
Cpa.g.sc5.155 Carica papaya HOM05D002585 ORTHO05D002917 3.0e-22 110.9 262 27.1
Nitab4.5_0000132g0100 Nicotiana tabacum HOM05D002585 ORTHO05D002917 2.0e-21 108.2 357 23.5
Nitab4.5_0000963g0030 Nicotiana tabacum HOM05D002585 ORTHO05D002917 2.2e-20 104.8 357 23.0
Pp3c21_9940 Physcomitrium patens HOM05D002585 ORTHO05D002917 4.1e-19 100.5 461 25.2
Peaxi162Scf00110g00034 Petunia axillaris HOM05D002585 ORTHO05D002917 7.0e-19 99.8 290 26.6
Pp3c22_1270 Physcomitrium patens HOM05D002585 ORTHO05D002917 2.3e-17 94.7 427 22.5
TPR.G30717 Trifolium pratense HOM05D002585 ORTHO05D002917 2.3e-17 94.7 202 28.7
Gohir.D03G082900 Gossypium hirsutum HOM05D002585 ORTHO05D002917 6.8e-14 83.2 132 30.3
AagrBONN_evm.TU.Sc2ySwM_228.740 Anthoceros agrestis HOM05D002585 ORTHO05D002917 3.4e-13 80.9 272 28.3
Sopen01g019530 Solanum pennellii HOM05D002585 ORTHO05D002917 5.8e-13 80.1 239 24.7
Gorai.008G052500 Gossypium raimondii HOM05D002585 ORTHO05D002917 2.2e-12 78.2 132 29.5
Zm00001eb162900 Zea mays HOM05D002585 ORTHO05D002917 9.2e-11 72.8 118 33.1
Solyc06g011330.3 Solanum lycopersicum HOM05D002585 ORTHO05D002917 4.6e-10 70.5 299 21.4
Cfa024801 Carpinus fangiana HOM05D002585 ORTHO05D002917 1.3e-09 68.9 187 28.9
Cre03.g146627 Chlamydomonas reinhardtii HOM05D002585 ORTHO05D002917 2.3e-09 68.2 79 41.8
Gorai.011G171800 Gossypium raimondii HOM05D002585 ORTHO05D002917 3.9e-09 67.4 113 30.1
ClCG00G006000 Citrullus lanatus HOM05D002585 ORTHO05D002917 1.9e-08 65.1 108 30.6
Zm00001eb398810 Zea mays HOM05D002585 ORTHO05D002917 2.5e-08 64.7 113 31.9
PGSC0003DMG403009595 Solanum tuberosum HOM05D002585 ORTHO05D002917 5.6e-08 63.5 252 22.6
Gohir.D06G163101 Gossypium hirsutum HOM05D002585 ORTHO05D002917 1.6e-07 62.0 113 27.4


User provided reference genes

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