Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c20_23720 Physcomitrium patens HOM05D011903 ORTHO05D002806 6.1e-34 146.7 66 100.0
Pp3c19_23130 Physcomitrium patens HOM05D011903 ORTHO05D002806 1.0e-17 92.8 54 77.8
Pp3c5_29220 Physcomitrium patens HOM05D011903 ORTHO05D002806 1.0e-17 92.8 54 77.8
Pp3s241_30 Physcomitrium patens HOM05D011903 ORTHO05D002806 1.0e-17 92.8 54 77.8
Pp3c2_40 Physcomitrium patens HOM05D011903 ORTHO05D002806 3.0e-17 91.3 54 75.9
Pp3s76_20 Physcomitrium patens HOM05D011903 ORTHO05D002806 3.4e-16 87.8 54 72.2
Pp3c19_340 Physcomitrium patens HOM05D011903 ORTHO05D002806 3.1e-14 81.3 44 77.3
Pp3c2_38430 Physcomitrium patens HOM05D011903 ORTHO05D002806 7.8e-13 76.6 44 72.7
Pp3c26_15770 Physcomitrium patens HOM05D011903 ORTHO05D002806 1.0e-12 76.3 41 78.0
Pp3c12_8190 Physcomitrium patens HOM05D003468 ORTHO05D002806 1.9e-11 72.0 52 59.6
Mapoly0007s0033 Marchantia polymorpha HOM05D003468 ORTHO05D002806 9.5e-11 69.7 54 57.4
Pp3c17_20 Physcomitrium patens HOM05D011903 ORTHO05D002806 2.8e-10 68.2 35 80.0
AagrBONN_evm.TU.Sc2ySwM_344.4617 Anthoceros agrestis HOM05D003468 ORTHO05D002806 6.8e-09 63.5 50 58.0
Pp3c3_10 Physcomitrium patens HOM05D011903 ORTHO05D002806 6.8e-09 63.5 44 68.2
Ciclev10028601m.g Citrus clementina HOM05D003468 ORTHO05D002806 8.9e-09 63.2 52 53.8
CDE07G0878 Ceratophyllum demersum HOM05D003468 ORTHO05D002806 2.6e-08 61.6 50 56.0
Pp3c19_1310 Physcomitrium patens HOM05D011903 ORTHO05D002806 4.4e-08 60.8 53 56.6
SMO367G1195 Selaginella moellendorffii HOM05D003468 ORTHO05D002806 4.4e-08 60.8 50 54.0
Pp3c3_11280 Physcomitrium patens HOM05D003468 ORTHO05D002806 1.3e-07 59.3 51 52.9
Lj2A1101T50 Lonicera japonica HOM05D003468 ORTHO05D002806 1.7e-07 58.9 51 52.9
Sabra13G0124400 Salix brachista HOM05D003468 ORTHO05D002806 1.7e-07 58.9 51 47.1
Phvul.009G025400 Phaseolus vulgaris HOM05D003468 ORTHO05D002806 2.2e-07 58.5 51 51.0
Dinv28729 Davidia involucrata HOM05D003468 ORTHO05D002806 3.7e-07 57.8 51 51.0
SalBow2G1693 Salvia bowleyana HOM05D003468 ORTHO05D002806 3.7e-07 57.8 54 50.0
Potri.013G154500 Populus trichocarpa HOM05D003468 ORTHO05D002806 4.9e-07 57.4 51 47.1
Aqoxy6G01245 Aquilegia oxysepala HOM05D003468 ORTHO05D002806 8.3e-07 56.6 51 49.0
MELO3C026878.2 Cucumis melo HOM05D003468 ORTHO05D002806 1.1e-06 56.2 51 51.0
CsaV3_6G013110 Cucumis sativus L. HOM05D003468 ORTHO05D002806 1.1e-06 56.2 51 51.0
FvH4_3g40451 Fragaria vesca HOM05D003468 ORTHO05D002806 1.1e-06 56.2 50 52.0
QL01p024883 Quercus lobata HOM05D003468 ORTHO05D002806 1.1e-06 56.2 51 49.0
A09p60340 Brassica napus HOM05D001027 ORTHO05D000844 1.4e-06 55.8 49 51.0
BraA09t41406Z Brassica rapa HOM05D001027 ORTHO05D000844 1.4e-06 55.8 49 51.0
Glyma.04G148800 Glycine max HOM05D003468 ORTHO05D002806 1.4e-06 55.8 47 55.3
MD11G1054300 Malus domestica HOM05D003468 ORTHO05D002806 1.4e-06 55.8 49 53.1
Psat5g289920 Pisum sativum HOM05D001027 ORTHO05D000844 1.4e-06 55.8 53 47.2
QL02p099821 Quercus lobata HOM05D003468 ORTHO05D002806 1.4e-06 55.8 51 49.0
Zm00001eb271970 Zea mays HOM05D024462 ORTHO05D002806 1.4e-06 55.8 47 53.2
FAN16G1667 Fragaria x ananassa HOM05D003468 ORTHO05D002806 1.9e-06 55.5 50 50.0
FAN21G2193 Fragaria x ananassa HOM05D003468 ORTHO05D002806 1.9e-06 55.5 50 50.0
SalBow4G1032 Salvia bowleyana HOM05D003468 ORTHO05D002806 1.9e-06 55.5 50 48.0
VMungo1309G2250 Vigna mungo HOM05D003468 ORTHO05D002806 1.9e-06 55.5 51 49.0
CSS0029508 Camellia sinensis var. sinensis HOM05D003468 ORTHO05D002806 2.4e-06 55.1 51 49.0
Haze_24464 Corylus avellana HOM05D003468 ORTHO05D002806 2.4e-06 55.1 51 49.0
Dinv12277 Davidia involucrata HOM05D003468 ORTHO05D002806 2.4e-06 55.1 51 49.0
Hma1.2p1_0170F.1_g075010 Hydrangea macrophylla HOM05D003468 ORTHO05D002806 2.4e-06 55.1 47 53.2
Actinidia34492 Actinidia chinensis HOM05D003468 ORTHO05D002806 3.2e-06 54.7 51 49.0
Glyma.06G216400 Glycine max HOM05D003468 ORTHO05D002806 3.2e-06 54.7 47 53.2
Oeu064681.2 Olea europaea HOM05D003468 ORTHO05D002806 3.2e-06 54.7 52 51.9
Sed0021873 Sechium edule HOM05D003468 ORTHO05D002806 3.2e-06 54.7 51 47.1
Zm00001eb374860 Zea mays HOM05D024462 ORTHO05D002806 3.2e-06 54.7 47 48.9
Cfa021527 Carpinus fangiana HOM05D003468 ORTHO05D002806 4.1e-06 54.3 50 48.0
Cc01_g15290 Coffea canephora HOM05D003468 ORTHO05D002806 4.1e-06 54.3 50 48.0
FAN08G2580 Fragaria x ananassa HOM05D003468 ORTHO05D002806 4.1e-06 54.3 50 50.0
Nn2g10321 Nelumbo nucifera HOM05D003468 ORTHO05D002806 5.4e-06 53.9 50 48.0
RcHm_v2.0_Chr5g0073101 Rosa chinensis HOM05D003468 ORTHO05D002806 5.4e-06 53.9 50 48.0
TWI79G0734 Tripterygium wilfordii HOM05D003468 ORTHO05D002806 5.4e-06 53.9 52 46.2
vmacro10619 Vaccinium macrocarpon HOM05D003468 ORTHO05D002806 5.4e-06 53.9 51 49.0
CANSAT54G1733 Cannabis sativa HOM05D003468 ORTHO05D002806 7.0e-06 53.5 50 46.0
FAN13G0004 Fragaria x ananassa HOM05D003468 ORTHO05D002806 7.0e-06 53.5 50 48.0
FAN18G3325 Fragaria x ananassa HOM05D003468 ORTHO05D002806 7.0e-06 53.5 50 48.0
MCO04G433 Micromonas commoda HOM05D003468 ORTHO05D002806 7.0e-06 53.5 49 46.9
SGA_v2.0_scaffold120G32985 Striga asiatica HOM05D003468 ORTHO05D002806 7.0e-06 53.5 51 49.0
ECA247G2629 Erigeron canadensis HOM05D003468 ORTHO05D002806 9.2e-06 53.1 50 50.0
Eucgr.B00490 Eucalyptus grandis HOM05D003468 ORTHO05D002806 9.2e-06 53.1 51 49.0
Eucgr.B00647 Eucalyptus grandis HOM05D003468 ORTHO05D002806 9.2e-06 53.1 51 49.0
HanXRQChr16g0497711 Helianthus annuus HOM05D006374 ORTHO05D006349 9.2e-06 53.1 52 50.0
HPP92_005948 Vanilla planifolia HOM05D003468 ORTHO05D002806 9.2e-06 53.1 51 49.0


User provided reference genes

Program Settings