Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c20_23380 Physcomitrium patens HOM05D004805 ORTHO05D005756 0.0e+00 1335.1 680 100.0
Pp3c10_25720 Physcomitrium patens HOM05D004805 ORTHO05D005756 6.5e-264 914.1 610 79.2
Pp3c3_17230 Physcomitrium patens HOM05D004805 ORTHO05D005756 4.5e-188 662.1 449 75.7
Pp3c13_13680 Physcomitrium patens HOM05D004805 ORTHO05D005756 1.3e-179 634.0 447 73.4
Mapoly0011s0011 Marchantia polymorpha HOM05D004805 ORTHO05D005756 1.4e-146 524.2 629 51.5
AagrBONN_evm.TU.Sc2ySwM_362.484 Anthoceros agrestis HOM05D004805 ORTHO05D005756 7.2e-138 495.4 443 58.2
AagrBONN_evm.TU.Sc2ySwM_228.3487 Anthoceros agrestis HOM05D004805 ORTHO05D005756 6.8e-128 462.2 439 56.3
Aqoxy4G03118 Aquilegia oxysepala HOM05D004805 ORTHO05D005756 2.8e-73 280.8 245 57.6
CANSAT11G2385 Cannabis sativa HOM05D004805 ORTHO05D005756 1.8e-72 278.1 244 54.1
CAN.G623.13 Capsicum annuum HOM05D004805 ORTHO05D005756 1.2e-71 275.4 248 55.2
ClCG10G004450 Citrullus lanatus HOM05D004805 ORTHO05D005756 1.2e-71 275.4 245 53.9
TAR626G0989 Trochodendron aralioides HOM05D004805 ORTHO05D005756 2.6e-71 274.2 254 54.3
DCAR_013232 Daucus carota HOM05D004805 ORTHO05D005756 5.8e-71 273.1 246 55.7
Phvul.008G279200 Phaseolus vulgaris HOM05D004805 ORTHO05D005756 5.8e-71 273.1 248 53.2
RcHm_v2.0_Chr7g0241681 Rosa chinensis HOM05D004805 ORTHO05D005756 5.8e-71 273.1 243 53.1
Glyma.14G013400 Glycine max HOM05D004805 ORTHO05D005756 1.3e-70 271.9 246 54.5
Glyma.17G150300 Glycine max HOM05D004805 ORTHO05D005756 2.2e-70 271.2 245 54.3
PSO832G0973 Papaver somniferum HOM05D004805 ORTHO05D005756 2.9e-70 270.8 247 53.4
Carub.0008s1616 Capsella rubella HOM05D004805 ORTHO05D005756 3.8e-70 270.4 239 54.0
LjContig00081g0004731 Lotus japonicus HOM05D004805 ORTHO05D005756 3.8e-70 270.4 244 53.3
PGSC0003DMG400022170 Solanum tuberosum HOM05D004805 ORTHO05D005756 3.8e-70 270.4 223 57.0
Sopen07g033800 Solanum pennellii HOM05D004805 ORTHO05D005756 4.9e-70 270.0 242 54.1
BcaB01g04372 Brassica carinata HOM05D004805 ORTHO05D005756 6.4e-70 269.6 239 54.0
PGR142G3095 Punica granatum HOM05D004805 ORTHO05D005756 6.4e-70 269.6 242 52.1
TPR.G8592 Trifolium pratense HOM05D004805 ORTHO05D005756 6.4e-70 269.6 246 51.6
CARHR269130 Cardamine hirsuta HOM05D004805 ORTHO05D005756 8.4e-70 269.2 239 53.6
Atru.chr13.2016 Acer truncatum HOM05D004805 ORTHO05D005756 1.1e-69 268.9 253 51.8
Nn1g07520 Nelumbo nucifera HOM05D004805 ORTHO05D005756 1.1e-69 268.9 247 53.4
Peaxi162Scf00139g01316 Petunia axillaris HOM05D004805 ORTHO05D005756 1.4e-69 268.5 242 54.5
GSVIVG01014691001 Vitis vinifera HOM05D004805 ORTHO05D005756 1.4e-69 268.5 247 53.0
FvH4_3g11630 Fragaria vesca HOM05D004805 ORTHO05D005756 1.9e-69 268.1 242 51.7
Lalb_Chr09g0322761 Lupinus albus HOM05D004805 ORTHO05D005756 2.4e-69 267.7 247 51.4
THA.LOC104811668 Tarenaya hassleriana HOM05D004805 ORTHO05D005756 2.4e-69 267.7 240 53.3
Psat2g007280 Pisum sativum HOM05D004805 ORTHO05D005756 3.2e-69 267.3 246 50.8
Solyc07g065590.4 Solanum lycopersicum HOM05D004805 ORTHO05D005756 3.2e-69 267.3 243 53.5
FAN25G0449 Fragaria x ananassa HOM05D004805 ORTHO05D005756 5.4e-69 266.5 242 51.7
Prupe.3G149500 Prunus persica HOM05D004805 ORTHO05D005756 7.1e-69 266.2 245 51.4
Sp6g17690 Schrenkiella parvula HOM05D004805 ORTHO05D005756 9.3e-69 265.8 239 53.1
BcaC04g20199 Brassica carinata HOM05D004805 ORTHO05D005756 1.2e-68 265.4 239 53.1
Cfa020188 Carpinus fangiana HOM05D004805 ORTHO05D005756 1.2e-68 265.4 249 52.6
CsaV3_3G004240 Cucumis sativus L. HOM05D004805 ORTHO05D005756 1.2e-68 265.4 245 51.8
FAN16G0962 Fragaria x ananassa HOM05D004805 ORTHO05D005756 1.2e-68 265.4 242 51.7
Ca_06397_v3 Cicer arietinum L. HOM05D004805 ORTHO05D005756 1.6e-68 265.0 246 52.0
Rhsim06G0229900 Rhododendron simsii HOM05D004805 ORTHO05D005756 1.6e-68 265.0 256 52.0
RcHm_v2.0_Chr5g0018651 Rosa chinensis HOM05D004805 ORTHO05D005756 2.1e-68 264.6 243 51.4
Aa31LG3G11710 Aethionema arabicum HOM05D004805 ORTHO05D005756 2.7e-68 264.2 239 52.3
Medtr5g095960 Medicago truncatula HOM05D004805 ORTHO05D005756 2.7e-68 264.2 246 50.4
Atru.chr9.1539 Acer truncatum HOM05D004805 ORTHO05D005756 4.6e-68 263.5 242 51.7
BcaC01g06393 Brassica carinata HOM05D004805 ORTHO05D005756 4.6e-68 263.5 239 52.3
CiPaw.12G138400 Carya illinoinensis HOM05D004805 ORTHO05D005756 6.0e-68 263.1 244 52.0
Lj1g0004670 Lotus japonicus HOM05D004805 ORTHO05D005756 6.0e-68 263.1 246 51.2
Duzib268G0855 Durio zibethinus HOM05D004805 ORTHO05D005756 7.9e-68 262.7 242 52.1
Carub.0005s0950 Capsella rubella HOM05D004805 ORTHO05D005756 1.0e-67 262.3 238 53.8
AL8G31370 Arabidopsis lyrata HOM05D004805 ORTHO05D005756 1.8e-67 261.5 239 53.1
Carub.0005s0937 Capsella rubella HOM05D004805 ORTHO05D005756 1.8e-67 261.5 238 53.8
Dinv10336 Davidia involucrata HOM05D004805 ORTHO05D005756 1.8e-67 261.5 253 52.6
MD05G1261800 Malus domestica HOM05D004805 ORTHO05D005756 2.3e-67 261.2 243 50.6
Sed0016007 Sechium edule HOM05D004805 ORTHO05D005756 2.3e-67 261.2 245 51.4
ATR0090G032 Amborella trichopoda HOM05D004805 ORTHO05D005756 3.0e-67 260.8 223 56.5
AT5G55810 Arabidopsis thaliana HOM05D004805 ORTHO05D005756 3.0e-67 260.8 239 51.9
Haze_09828 Corylus avellana HOM05D004805 ORTHO05D005756 3.0e-67 260.8 247 51.8
Lsat_1_v5_gn_9_89740 Lactuca sativa HOM05D004805 ORTHO05D005756 3.0e-67 260.8 245 52.7
PSO063G7513 Papaver somniferum HOM05D004805 ORTHO05D005756 3.0e-67 260.8 244 53.3
CSS0002120 Camellia sinensis var. sinensis HOM05D004805 ORTHO05D005756 3.9e-67 260.4 249 52.2
HanXRQChr03g0074031 Helianthus annuus HOM05D004805 ORTHO05D005756 3.9e-67 260.4 221 56.6
Gorai.004G033700 Gossypium raimondii HOM05D004805 ORTHO05D005756 5.1e-67 260.0 240 52.5
Ciclev10009329m.g Citrus clementina HOM05D004805 ORTHO05D005756 6.7e-67 259.6 243 50.2
Cc00_g18290 Coffea canephora HOM05D004805 ORTHO05D005756 8.7e-67 259.2 241 53.5
Actinidia05003 Actinidia chinensis HOM05D004805 ORTHO05D005756 1.1e-66 258.8 247 51.8
EL10Ac1g00341 Beta vulgaris HOM05D004805 ORTHO05D005756 1.1e-66 258.8 250 50.8
Eucgr.F03688 Eucalyptus grandis HOM05D004805 ORTHO05D005756 1.1e-66 258.8 243 52.3
arahy.Tifrunner.gnm1.ann1.1A96RS Arachis hypogaea HOM05D004805 ORTHO05D005756 7.4e-66 256.1 241 50.6
arahy.Tifrunner.gnm1.ann1.KL44N8 Arachis hypogaea HOM05D004805 ORTHO05D005756 7.4e-66 256.1 243 50.2
Actinidia30402 Actinidia chinensis HOM05D004805 ORTHO05D005756 9.6e-66 255.8 250 51.2
ECA234G3028 Erigeron canadensis HOM05D004805 ORTHO05D005756 9.6e-66 255.8 251 52.6
HPP92_025829 Vanilla planifolia HOM05D004805 ORTHO05D005756 9.6e-66 255.8 244 51.2
BcaB08g35939 Brassica carinata HOM05D004805 ORTHO05D005756 6.2e-65 253.1 244 50.4
Zm00001eb191530 Zea mays HOM05D004805 ORTHO05D005756 6.2e-65 253.1 242 53.7
AagrBONN_evm.TU.Sc2ySwM_344.1047 Anthoceros agrestis HOM05D004805 ORTHO05D005756 8.1e-65 252.7 229 55.0
CBR_g34363 Chara braunii HOM05D000019 ORTHO05D000002 1.1e-64 252.3 234 53.4
Potri.005G032300 Populus trichocarpa HOM05D004805 ORTHO05D005756 1.4e-64 251.9 241 50.2
SGA_v2.0_scaffold44G16806 Striga asiatica HOM05D001081 ORTHO05D003320 3.1e-64 250.8 242 50.4
Manes.03G141600 Manihot esculenta HOM05D004805 ORTHO05D005756 6.9e-64 249.6 243 49.8
Potri.013G021900 Populus trichocarpa HOM05D004805 ORTHO05D005756 1.2e-63 248.8 237 49.8
Sabra05G0034900 Salix brachista HOM05D004805 ORTHO05D005756 1.5e-63 248.4 242 49.2
Lj1C890G11 Lonicera japonica HOM05D004805 ORTHO05D005756 2.6e-63 247.7 248 52.0
MELO3C014119.2 Cucumis melo HOM05D004805 ORTHO05D005756 1.7e-62 245.0 282 46.1
MSTRG.27026 Avicennia marina HOM05D004805 ORTHO05D005756 1.1e-61 242.3 240 49.6
AUR62022629 Chenopodium quinoa HOM05D004805 ORTHO05D005756 3.5e-60 237.3 239 49.0
SalBow4G0417 Salvia bowleyana HOM05D004805 ORTHO05D005756 1.3e-59 235.3 271 44.6
A03p13810 Brassica napus HOM05D004805 ORTHO05D005756 3.0e-59 234.2 212 52.4
Duzib213G0036 Durio zibethinus HOM05D004805 ORTHO05D005756 3.0e-59 234.2 241 48.5
Gohir.D08G035700 Gossypium hirsutum HOM05D004805 ORTHO05D005756 3.9e-59 233.8 240 49.2
C03p16250 Brassica napus HOM05D004805 ORTHO05D005756 8.7e-59 232.6 212 51.9
Gohir.A08G025200 Gossypium hirsutum HOM05D004805 ORTHO05D005756 8.7e-59 232.6 240 48.8
Nitab4.5_0002736g0040 Nicotiana tabacum HOM05D004805 ORTHO05D005756 7.4e-58 229.6 197 54.3
C09p46750 Brassica napus HOM05D004805 ORTHO05D005756 1.3e-57 228.8 213 52.1
BolC9t57526H Brassica oleracea HOM05D004805 ORTHO05D005756 1.3e-57 228.8 213 52.1
A10p13030 Brassica napus HOM05D004805 ORTHO05D005756 2.1e-57 228.0 213 52.1
MD10G1240100 Malus domestica HOM05D004805 ORTHO05D005756 3.7e-57 227.3 203 51.7
BraA10t43397Z Brassica rapa HOM05D004805 ORTHO05D005756 1.1e-56 225.7 213 51.2
VMungo0647G2576 Vigna mungo HOM05D004805 ORTHO05D005756 1.4e-56 225.3 195 54.9
TWI38G2348 Tripterygium wilfordii HOM05D004805 ORTHO05D005756 2.4e-56 224.6 202 51.5
Nitab4.5_0007415g0050 Nicotiana tabacum HOM05D004805 ORTHO05D005756 2.6e-55 221.1 198 54.0
QL08p004083 Quercus lobata HOM05D004805 ORTHO05D005756 1.3e-54 218.8 205 50.7
SMO364G0361 Selaginella moellendorffii HOM05D004805 ORTHO05D005756 4.9e-54 216.9 217 48.8
Sc16g0008090 Simmondsia chinensis HOM05D004805 ORTHO05D005756 8.4e-54 216.1 247 46.2
Hma1.2p1_1402F.1_g281100 Hydrangea macrophylla HOM05D004805 ORTHO05D005756 1.1e-53 215.7 216 49.5
Medtr3g007850 Medicago truncatula HOM05D004805 ORTHO05D005756 1.1e-53 215.7 196 51.5
CAN.G849.12 Capsicum annuum HOM05D004805 ORTHO05D005756 1.4e-53 215.3 195 54.4
AagrBONN_evm.TU.Sc2ySwM_344.1045 Anthoceros agrestis HOM05D004805 ORTHO05D005756 3.2e-53 214.2 199 55.3
Hund27237 Selenicereus undatus HOM05D004805 ORTHO05D005756 7.1e-53 213.0 272 41.2
AagrBONN_evm.TU.Sc2ySwM_344.1044 Anthoceros agrestis HOM05D004805 ORTHO05D005756 1.3e-51 208.8 214 55.6
Lsat_1_v5_gn_4_137701 Lactuca sativa HOM05D004805 ORTHO05D005756 8.7e-51 206.1 188 52.7
AUR62004423 Chenopodium quinoa HOM05D004805 ORTHO05D005756 4.3e-50 203.8 166 57.8
vmacro11591 Vaccinium macrocarpon HOM05D004805 ORTHO05D005756 4.3e-50 203.8 261 43.7
Thecc.07G013300 Theobroma cacao HOM05D004805 ORTHO05D005756 1.1e-48 199.1 177 50.8
SGA_v2.0_scaffold192G40544 Striga asiatica HOM05D001081 ORTHO05D003320 2.9e-46 191.0 232 42.7
FAN21G3052 Fragaria x ananassa HOM05D004805 ORTHO05D005756 7.2e-45 186.4 159 55.3
SEGI_06932 Sequoiadendron giganteum HOM05D004805 ORTHO05D018109 1.6e-44 185.3 169 54.4
Prupe.4G103800 Prunus persica HOM05D004805 ORTHO05D005756 4.6e-44 183.7 245 38.8
Ah.05g180060 Amaranthus hybridus HOM05D004805 ORTHO05D005756 6.1e-44 183.3 195 50.3
CARHR269180 Cardamine hirsuta HOM05D004805 ORTHO05D005756 6.1e-44 183.3 164 51.8
PRCOL_00003123 Prasinoderma coloniale HOM05D004805 ORTHO05D005756 1.5e-42 178.7 221 44.3
Migut.F01027 Erythranthe guttata HOM05D004805 ORTHO05D005756 2.2e-41 174.9 239 41.0
Os02g0814900 Oryza sativa ssp. japonica HOM05D004805 ORTHO05D005756 3.7e-41 174.1 188 48.9
TAR624G1110 Trochodendron aralioides HOM05D004805 ORTHO05D005756 1.1e-40 172.6 202 46.0
BraA03t10684Z Brassica rapa HOM05D004805 ORTHO05D005756 9.1e-40 169.5 223 40.8
Lj3g0007860 Lotus japonicus HOM05D004805 ORTHO05D005756 3.4e-39 167.5 244 41.8
Glyma.19G097900 Glycine max HOM05D004805 ORTHO05D005756 1.7e-38 165.2 144 54.2
Hma1.2p1_1516F.1_g288260 Hydrangea macrophylla HOM05D004805 ORTHO05D005756 1.8e-35 155.2 196 42.3
DCAR_000844 Daucus carota HOM05D004805 ORTHO05D007187 6.7e-35 153.3 172 45.9
BolC3t14047H Brassica oleracea HOM05D004805 ORTHO05D005756 2.0e-34 151.8 233 36.9
COL.COLO4_09836 Corchorus olitorius HOM05D004805 ORTHO05D005756 1.3e-33 149.1 121 59.5
Rhsim04G0012600 Rhododendron simsii HOM05D004805 ORTHO05D005756 7.0e-32 143.3 166 45.2
Thhalv10015421m.g Eutrema salsugineum HOM05D004805 ORTHO05D005756 7.7e-31 139.8 192 39.6
Os09g0347900 Oryza sativa ssp. japonica HOM05D004805 ORTHO05D005756 1.0e-27 129.4 106 55.7
Cpa.g.sc26.30 Carica papaya HOM05D004805 ORTHO05D005756 2.6e-26 124.8 107 50.5
ECA240G4670 Erigeron canadensis HOM05D004805 ORTHO05D005756 7.0e-24 116.7 105 53.3
unitig_0.g252 Utricularia gibba HOM05D004805 ORTHO05D005756 2.2e-22 111.7 105 45.7
SEGI_22417 Sequoiadendron giganteum HOM05D004805 ORTHO05D005756 5.0e-22 110.5 84 58.3
Glyma.02G300600 Glycine max HOM05D004805 ORTHO05D005756 3.2e-21 107.8 105 49.5
PSO170G0902 Papaver somniferum HOM05D004805 ORTHO05D005756 4.2e-21 107.5 100 52.0
Cfa025186 Carpinus fangiana HOM05D004805 ORTHO05D005756 2.7e-20 104.8 161 37.9
CBR_g34381 Chara braunii HOM05D000019 ORTHO05D000048 2.0e-15 88.6 81 49.4
SEGI_01519 Sequoiadendron giganteum HOM05D004805 ORTHO05D005756 8.5e-14 83.2 72 56.9
QL08p004070 Quercus lobata HOM05D000031 ORTHO05D005756 1.9e-13 82.0 191 31.4
Hma1.2p1_0226F.1_g095340 Hydrangea macrophylla HOM05D004805 ORTHO05D005756 4.2e-13 80.9 159 33.3
Cre14.g626950 Chlamydomonas reinhardtii HOM05D004805 ORTHO05D005756 6.1e-12 77.0 115 35.7
SEGI_37983 Sequoiadendron giganteum HOM05D004805 ORTHO05D005756 8.8e-11 73.2 82 45.1
FAN24G2452 Fragaria x ananassa HOM05D004805 ORTHO05D005756 1.4e-08 65.9 54 55.6
CBR_g40490 Chara braunii HOM05D000601 ORTHO05D000407 7.0e-08 63.5 150 29.3
SMO141G0264 Selaginella moellendorffii HOM05D010558 ORTHO05D018109 9.1e-08 63.2 123 28.5
AagrBONN_evm.TU.Sc2ySwM_362.820 Anthoceros agrestis HOM05D002537 ORTHO05D004294 1.6e-07 62.4 126 27.8
Hma1.2p1_0488F.1_g163860 Hydrangea macrophylla HOM05D005963 ORTHO05D006869 2.0e-07 62.0 119 31.1
Oeu037059.1 Olea europaea HOM05D004805 ORTHO05D005756 5.9e-07 60.5 63 47.6
Mapoly0229s0008 Marchantia polymorpha HOM05D002537 ORTHO05D002751 7.7e-07 60.1 136 27.9
Actinidia25056 Actinidia chinensis HOM05D005963 ORTHO05D006869 1.3e-06 59.3 156 32.1
Mapoly0056s0059 Marchantia polymorpha HOM05D002537 ORTHO05D002751 2.3e-06 58.5 138 25.4
Mapoly0001s0020 Marchantia polymorpha HOM05D002537 ORTHO05D002751 2.9e-06 58.2 92 31.5
AagrBONN_evm.TU.Sc2ySwM_228.3565 Anthoceros agrestis HOM05D002537 ORTHO05D002751 5.0e-06 57.4 92 33.7
arahy.Tifrunner.gnm1.ann1.G2RQNR Arachis hypogaea HOM05D005963 ORTHO05D006869 5.0e-06 57.4 124 31.5
arahy.Tifrunner.gnm1.ann1.R4K09I Arachis hypogaea HOM05D005963 ORTHO05D006869 5.0e-06 57.4 124 31.5
Actinidia13537 Actinidia chinensis HOM05D005963 ORTHO05D006869 6.6e-06 57.0 204 28.9
ECA234G1395 Erigeron canadensis HOM05D004805 ORTHO05D005756 6.6e-06 57.0 66 47.0
SMO180G0014 Selaginella moellendorffii HOM05D010558 ORTHO05D018109 6.6e-06 57.0 199 24.6
AagrBONN_evm.TU.Sc2ySwM_117.2665 Anthoceros agrestis HOM05D003725 ORTHO05D004294 8.6e-06 56.6 157 28.0


User provided reference genes

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