Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c20_23180 Physcomitrium patens HOM05D006349 ORTHO05D008205 7.7e-88 327.4 201 100.0
Pp3c25_12400 Physcomitrium patens HOM05D006349 ORTHO05D008205 1.2e-53 213.8 157 88.5
Pp3c24_420 Physcomitrium patens HOM05D006349 ORTHO05D008205 1.1e-44 184.1 201 65.2
Mapoly0105s0011 Marchantia polymorpha HOM05D006349 ORTHO05D008205 4.4e-35 152.1 212 56.1
Zm00001eb160550 Zea mays HOM05D006349 ORTHO05D008205 2.2e-34 149.8 160 62.5
PSO781G0309 Papaver somniferum HOM05D006349 ORTHO05D008205 6.4e-34 148.3 161 61.5
ECA232G0565 Erigeron canadensis HOM05D006349 ORTHO05D008205 8.3e-34 147.9 161 61.5
HanXRQChr09g0271121 Helianthus annuus HOM05D006349 ORTHO05D008205 3.2e-33 146.0 161 60.2
TPR.G11993 Trifolium pratense HOM05D006349 ORTHO05D008205 4.1e-33 145.6 156 64.1
arahy.Tifrunner.gnm1.ann1.FR12T1 Arachis hypogaea HOM05D006349 ORTHO05D008205 7.1e-33 144.8 160 63.1
Psat7g112120 Pisum sativum HOM05D006349 ORTHO05D008205 1.2e-32 144.1 154 63.6
arahy.Tifrunner.gnm1.ann1.GD5F3R Arachis hypogaea HOM05D006349 ORTHO05D008205 2.1e-32 143.3 160 62.5
Os01g0585300 Oryza sativa ssp. japonica HOM05D006349 ORTHO05D008205 6.0e-32 141.7 158 61.4
PGR083G1017 Punica granatum HOM05D006349 ORTHO05D008205 6.0e-32 141.7 161 59.0
Lsat_1_v5_gn_4_107320 Lactuca sativa HOM05D006349 ORTHO05D008205 7.8e-32 141.4 159 60.4
AUR62021741 Chenopodium quinoa HOM05D006349 ORTHO05D008205 1.3e-31 140.6 158 60.8
MBI19_g30284_MAGBIO Magnolia biondii HOM05D006349 ORTHO05D008205 3.9e-31 139.0 158 60.1
DCAR_015995 Daucus carota HOM05D006349 ORTHO05D008205 6.6e-31 138.3 169 58.0
Eucgr.B00425 Eucalyptus grandis HOM05D006349 ORTHO05D008205 1.1e-30 137.5 168 56.5
Gohir.A13G008300 Gossypium hirsutum HOM05D006349 ORTHO05D008205 1.1e-30 137.5 161 59.0
Gohir.D13G009000 Gossypium hirsutum HOM05D006349 ORTHO05D008205 1.1e-30 137.5 161 59.0
Gorai.013G009800 Gossypium raimondii HOM05D006349 ORTHO05D008205 1.1e-30 137.5 161 59.0
Peaxi162Scf00009g00321 Petunia axillaris HOM05D006349 ORTHO05D008205 1.1e-30 137.5 152 62.5
Nn4g23038 Nelumbo nucifera HOM05D006349 ORTHO05D008205 3.3e-30 136.0 160 60.0
Aqoxy3G03265 Aquilegia oxysepala HOM05D006349 ORTHO05D008205 5.6e-30 135.2 161 56.5
ClCG01G014390 Citrullus lanatus HOM05D006349 ORTHO05D008205 5.6e-30 135.2 162 58.6
Glyma.04G174400 Glycine max HOM05D006349 ORTHO05D008205 5.6e-30 135.2 162 59.3
CAN.G999.48 Capsicum annuum HOM05D006349 ORTHO05D008205 7.3e-30 134.8 161 59.0
Phvul.009G190100 Phaseolus vulgaris HOM05D006349 ORTHO05D008205 7.3e-30 134.8 162 60.5
PGSC0003DMG400025345 Solanum tuberosum HOM05D006349 ORTHO05D008205 7.3e-30 134.8 161 59.6
AUR62008355 Chenopodium quinoa HOM05D006349 ORTHO05D008205 9.5e-30 134.4 147 63.3
Glyma.06G190300 Glycine max HOM05D006349 ORTHO05D008205 1.2e-29 134.0 162 58.6
Manes.06G096400 Manihot esculenta HOM05D006349 ORTHO05D008205 1.2e-29 134.0 161 57.1
EL10Ac5g10944 Beta vulgaris HOM05D006349 ORTHO05D008205 1.6e-29 133.7 155 60.0
CDE07G1088 Ceratophyllum demersum HOM05D006349 ORTHO05D008205 1.6e-29 133.7 182 53.8
Solyc03g113240.3 Solanum lycopersicum HOM05D006349 ORTHO05D008205 1.6e-29 133.7 161 59.0
Sopen03g032300 Solanum pennellii HOM05D006349 ORTHO05D008205 1.6e-29 133.7 161 59.0
ATR1120G128 Amborella trichopoda HOM05D006349 ORTHO05D008205 2.1e-29 133.3 204 51.0
CANSAT80G2583 Cannabis sativa HOM05D006349 ORTHO05D008205 2.1e-29 133.3 152 60.5
RcHm_v2.0_Chr7g0180591 Rosa chinensis HOM05D006349 ORTHO05D008205 2.1e-29 133.3 151 60.9
SMO340G0151 Selaginella moellendorffii HOM05D006349 ORTHO05D008205 2.1e-29 133.3 152 64.5
MELO3C002208.2 Cucumis melo HOM05D006349 ORTHO05D008205 2.8e-29 132.9 188 52.1
Medtr4g089080 Medicago truncatula HOM05D006349 ORTHO05D008205 2.8e-29 132.9 161 59.0
GSVIVG01008063001 Vitis vinifera HOM05D006349 ORTHO05D008205 2.8e-29 132.9 161 56.5
Lj1g0000266 Lotus japonicus HOM05D006349 ORTHO05D008205 3.6e-29 132.5 162 58.0
Sp5g29850 Schrenkiella parvula HOM05D006349 ORTHO05D008205 3.6e-29 132.5 156 60.3
HPP92_022919 Vanilla planifolia HOM05D006349 ORTHO05D008205 4.7e-29 132.1 159 56.0
HPP92_022931 Vanilla planifolia HOM05D006349 ORTHO05D008205 4.7e-29 132.1 159 56.0
AT1G74730 Arabidopsis thaliana HOM05D006349 ORTHO05D008205 6.2e-29 131.7 156 58.3
FvH4_5g15500 Fragaria vesca HOM05D006349 ORTHO05D008205 6.2e-29 131.7 151 62.3
FAN18G4547 Fragaria x ananassa HOM05D006349 ORTHO05D008205 6.2e-29 131.7 151 62.3
QL10p015567 Quercus lobata HOM05D006349 ORTHO05D008205 6.2e-29 131.7 161 57.8
BcaC08g46899 Brassica carinata HOM05D006349 ORTHO05D008205 8.1e-29 131.3 156 59.0
A07p40410 Brassica napus HOM05D006349 ORTHO05D008205 8.1e-29 131.3 156 59.6
C06p48760 Brassica napus HOM05D006349 ORTHO05D008205 8.1e-29 131.3 156 59.0
BraA07t31583Z Brassica rapa HOM05D006349 ORTHO05D008205 8.1e-29 131.3 156 59.0
AL2G34620 Arabidopsis lyrata HOM05D006349 ORTHO05D008205 1.4e-28 130.6 156 57.7
Ciclev10022359m.g Citrus clementina HOM05D006349 ORTHO05D008205 1.4e-28 130.6 161 55.9
Hma1.2p1_0104F.1_g050210 Hydrangea macrophylla HOM05D006349 ORTHO05D008205 1.4e-28 130.6 161 57.1
Sc12g0006210 Simmondsia chinensis HOM05D006349 ORTHO05D008205 1.4e-28 130.6 158 58.9
BolC6t39912H Brassica oleracea HOM05D006349 ORTHO05D008205 1.8e-28 130.2 156 59.0
Carub.0002s2152 Capsella rubella HOM05D006349 ORTHO05D008205 1.8e-28 130.2 156 57.1
Cpa.g.sc17.203 Carica papaya HOM05D006349 ORTHO05D008205 1.8e-28 130.2 158 56.3
FAN13G0390 Fragaria x ananassa HOM05D006349 ORTHO05D008205 1.8e-28 130.2 151 61.6
MD06G1188100 Malus domestica HOM05D006349 ORTHO05D008205 1.8e-28 130.2 162 57.4
Hund02668 Selenicereus undatus HOM05D006349 ORTHO05D008205 1.8e-28 130.2 161 57.8
BcaC03g15525 Brassica carinata HOM05D006349 ORTHO05D008205 2.4e-28 129.8 156 59.6
C02p32090 Brassica napus HOM05D006349 ORTHO05D008205 2.4e-28 129.8 156 59.6
BraA02t06992Z Brassica rapa HOM05D006349 ORTHO05D008205 2.4e-28 129.8 156 59.6
CsaV3_1G007920 Cucumis sativus L. HOM05D006349 ORTHO05D008205 2.4e-28 129.8 152 59.9
Nitab4.5_0000785g0220 Nicotiana tabacum HOM05D006349 ORTHO05D008205 2.4e-28 129.8 161 58.4
Atru.chr9.2318 Acer truncatum HOM05D006349 ORTHO05D008205 5.2e-28 128.6 152 58.6
AagrBONN_evm.TU.Sc2ySwM_362.857 Anthoceros agrestis HOM05D006349 ORTHO05D008205 5.2e-28 128.6 188 57.4
Duzib068G1139 Durio zibethinus HOM05D006349 ORTHO05D008205 5.2e-28 128.6 161 55.9
Ah.02g113210 Amaranthus hybridus HOM05D006349 ORTHO05D008205 6.8e-28 128.3 145 61.4
FAN04G0897 Fragaria x ananassa HOM05D006349 ORTHO05D008205 6.8e-28 128.3 151 60.3
Nitab4.5_0004605g0070 Nicotiana tabacum HOM05D006349 ORTHO05D008205 6.8e-28 128.3 161 57.8
BolC2t09244H Brassica oleracea HOM05D006349 ORTHO05D008205 8.9e-28 127.9 156 58.3
CiPaw.11G038000 Carya illinoinensis HOM05D006349 ORTHO05D008205 2.0e-27 126.7 161 55.3
Migut.D01854 Erythranthe guttata HOM05D006349 ORTHO05D008205 2.6e-27 126.3 152 58.6
Oeu006473.1 Olea europaea HOM05D006349 ORTHO05D008205 3.4e-27 125.9 151 57.0
Ca_25734_v3 Cicer arietinum L. HOM05D006349 ORTHO05D008205 4.4e-27 125.6 154 57.1
Thecc.03G079100 Theobroma cacao HOM05D006349 ORTHO05D008205 4.4e-27 125.6 161 57.1
Lj9P459T48 Lonicera japonica HOM05D006349 ORTHO05D008205 5.8e-27 125.2 146 61.0
Potri.015G065100 Populus trichocarpa HOM05D006349 ORTHO05D008205 7.6e-27 124.8 162 54.3
Cfa018991 Carpinus fangiana HOM05D006349 ORTHO05D008205 1.3e-26 124.0 161 54.7
Lalb_Chr08g0235931 Lupinus albus HOM05D006349 ORTHO05D008205 1.3e-26 124.0 161 55.3
COL.COLO4_05705 Corchorus olitorius HOM05D006349 ORTHO05D008205 1.7e-26 123.6 161 55.9
CARHR068050 Cardamine hirsuta HOM05D006349 ORTHO05D008205 2.2e-26 123.2 162 54.9
Dinv38665 Davidia involucrata HOM05D006349 ORTHO05D008205 2.2e-26 123.2 146 61.0
PSO541G4605 Papaver somniferum HOM05D006349 ORTHO05D008205 2.2e-26 123.2 197 50.8
BcaB05g24870 Brassica carinata HOM05D003553 ORTHO05D005072 2.9e-26 122.9 156 57.1
Sed0016194 Sechium edule HOM05D006349 ORTHO05D008205 2.9e-26 122.9 154 57.1
SGA_v2.0_scaffold7G04081 Striga asiatica HOM05D006349 ORTHO05D008205 2.9e-26 122.9 152 58.6
CDE04G3639 Ceratophyllum demersum HOM05D006349 ORTHO05D008205 6.4e-26 121.7 182 52.7
Potri.012G070600 Populus trichocarpa HOM05D006349 ORTHO05D008205 8.4e-26 121.3 162 53.1
SalBow7G1566 Salvia bowleyana HOM05D006349 ORTHO05D008205 3.2e-25 119.4 152 56.6
vmacro19434 Vaccinium macrocarpon HOM05D006349 ORTHO05D008205 5.4e-25 118.6 151 57.6
TWI81G0140 Tripterygium wilfordii HOM05D006349 ORTHO05D008205 9.2e-25 117.9 161 52.8
TAR622G0703 Trochodendron aralioides HOM05D006349 ORTHO05D008205 9.2e-25 117.9 183 50.8
Sabra15G0090500 Salix brachista HOM05D006349 ORTHO05D008205 1.2e-24 117.5 162 52.5
CSS0001294 Camellia sinensis var. sinensis HOM05D006349 ORTHO05D008205 2.7e-24 116.3 146 57.5
Cc04_g15550 Coffea canephora HOM05D006349 ORTHO05D008205 2.7e-24 116.3 152 53.9
Aa31LG4G4960 Aethionema arabicum HOM05D006349 ORTHO05D008205 1.0e-23 114.4 156 53.2
Actinidia37657 Actinidia chinensis HOM05D006349 ORTHO05D008205 1.3e-23 114.0 148 55.4
BcaC08g46920 Brassica carinata HOM05D006349 ORTHO05D008205 1.3e-23 114.0 129 60.5
MD14G1194200 Malus domestica HOM05D006349 ORTHO05D008205 1.7e-23 113.6 199 47.7
MSTRG.4410 Avicennia marina HOM05D006349 ORTHO05D008205 6.6e-23 111.7 152 54.6
unitig_46.g18468 Utricularia gibba HOM05D006349 ORTHO05D008205 6.6e-23 111.7 155 53.5
Thhalv10019168m.g Eutrema salsugineum HOM05D006349 ORTHO05D008205 8.7e-23 111.3 156 54.5
SEGI_24937 Sequoiadendron giganteum HOM05D006349 ORTHO05D008205 3.6e-21 105.9 159 52.8
Prupe.5G186300 Prunus persica HOM05D006349 ORTHO05D008205 1.4e-20 104.0 152 53.9
Haze_07380 Corylus avellana HOM05D006349 ORTHO05D008205 2.6e-19 99.8 161 50.3
FAN08G2244 Fragaria x ananassa HOM05D006349 ORTHO05D008205 2.4e-17 93.2 151 53.6
Actinidia04919 Actinidia chinensis HOM05D006349 ORTHO05D008205 1.9e-14 83.6 74 54.1
A02p19550 Brassica napus HOM05D006349 ORTHO05D008205 1.2e-11 74.3 56 60.7
CBR_g48703 Chara braunii HOM05D006349 ORTHO05D008205 2.0e-11 73.6 203 41.9
SGA_v2.0_scaffold294G47475 Striga asiatica HOM05D006349 ORTHO05D008205 1.4e-09 67.4 129 39.5
Nn8g40820 Nelumbo nucifera HOM05D006349 ORTHO05D008205 9.3e-09 64.7 117 46.2
CARHR103880 Cardamine hirsuta HOM05D006349 ORTHO05D008205 3.9e-07 59.3 136 46.3
BcaC03g15526 Brassica carinata HOM05D006349 ORTHO05D008205 4.3e-06 55.8 107 41.1


User provided reference genes

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