Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c20_23130 Physcomitrium patens HOM05D005736 ORTHO05D007215 4.9e-111 404.4 197 100.0
Mapoly0002s0253 Marchantia polymorpha HOM05D005736 ORTHO05D007215 3.1e-65 252.3 186 64.5
Pp3c10_25170 Physcomitrium patens HOM05D005736 ORTHO05D007215 3.9e-60 235.3 124 90.3
Medtr7g112700 Medicago truncatula HOM05D005736 ORTHO05D007215 5.7e-59 231.5 185 60.0
Aqoxy5G00736 Aquilegia oxysepala HOM05D005736 ORTHO05D007215 7.4e-59 231.1 194 57.2
PGR031G0613 Punica granatum HOM05D005736 ORTHO05D007215 1.6e-58 229.9 186 59.1
Lj1g0012360 Lotus japonicus HOM05D005736 ORTHO05D007215 3.7e-58 228.8 190 56.3
Hma1.2p1_1292F.1_g273760 Hydrangea macrophylla HOM05D005736 ORTHO05D007215 8.2e-58 227.6 186 58.1
Nitab4.5_0003844g0030 Nicotiana tabacum HOM05D005736 ORTHO05D007215 8.2e-58 227.6 189 57.1
Lalb_Chr15g0077351 Lupinus albus HOM05D005736 ORTHO05D007215 2.4e-57 226.1 179 58.7
Peaxi162Scf00037g01216 Petunia axillaris HOM05D005736 ORTHO05D007215 2.4e-57 226.1 185 57.3
Psat3g011440 Pisum sativum HOM05D005736 ORTHO05D007215 2.4e-57 226.1 185 58.9
VMungo0540G0827 Vigna mungo HOM05D005736 ORTHO05D007215 2.4e-57 226.1 185 58.9
ClCG02G015270 Citrullus lanatus HOM05D005736 ORTHO05D007215 3.1e-57 225.7 183 57.9
FvH4_6g06571 Fragaria vesca HOM05D005736 ORTHO05D007215 4.1e-57 225.3 184 58.2
Phvul.006G089500 Phaseolus vulgaris HOM05D005736 ORTHO05D007215 5.3e-57 224.9 185 57.8
CANSAT54G0716 Cannabis sativa HOM05D005736 ORTHO05D007215 6.9e-57 224.6 182 57.1
CAN.G1459.12 Capsicum annuum HOM05D005736 ORTHO05D007215 9.0e-57 224.2 192 55.7
Nn3g21454 Nelumbo nucifera HOM05D005736 ORTHO05D007215 1.2e-56 223.8 186 57.5
Sed0015517 Sechium edule HOM05D005736 ORTHO05D007215 1.2e-56 223.8 183 58.5
Cpa.g.sc48.100 Carica papaya HOM05D005736 ORTHO05D007215 2.0e-56 223.0 186 54.8
DCAR_003356 Daucus carota HOM05D005736 ORTHO05D007215 2.6e-56 222.6 184 55.4
Prupe.6G320500 Prunus persica HOM05D005736 ORTHO05D007215 2.6e-56 222.6 184 57.6
TPR.G33191 Trifolium pratense HOM05D005736 ORTHO05D007215 2.6e-56 222.6 185 57.8
Glyma.03G235500 Glycine max HOM05D005736 ORTHO05D007215 3.4e-56 222.2 185 57.3
Glyma.19G233300 Glycine max HOM05D005736 ORTHO05D007215 3.4e-56 222.2 186 57.5
arahy.Tifrunner.gnm1.ann1.7HV2PX Arachis hypogaea HOM05D005736 ORTHO05D007215 4.5e-56 221.9 185 56.8
arahy.Tifrunner.gnm1.ann1.B5Q7D5 Arachis hypogaea HOM05D005736 ORTHO05D007215 4.5e-56 221.9 185 56.8
Thecc.05G313100 Theobroma cacao HOM05D005736 ORTHO05D007215 7.6e-56 221.1 183 57.4
MD12G1212900 Malus domestica HOM05D005736 ORTHO05D007215 1.0e-55 220.7 184 57.1
Ciclev10001982m.g Citrus clementina HOM05D005736 ORTHO05D007215 2.2e-55 219.5 179 59.2
Atru.chr2.31 Acer truncatum HOM05D005736 ORTHO05D007215 2.9e-55 219.2 179 57.0
AagrBONN_evm.TU.Sc2ySwM_344.5036 Anthoceros agrestis HOM05D005736 ORTHO05D007215 2.9e-55 219.2 188 56.4
EL10Ac4g09914 Beta vulgaris HOM05D005736 ORTHO05D007215 3.8e-55 218.8 188 54.8
CsaV3_2G006740 Cucumis sativus L. HOM05D005736 ORTHO05D007215 3.8e-55 218.8 183 56.8
Gohir.A11G294600 Gossypium hirsutum HOM05D005736 ORTHO05D007215 5.0e-55 218.4 184 54.9
Hund07098 Selenicereus undatus HOM05D005736 ORTHO05D007215 5.0e-55 218.4 187 54.5
GSVIVG01031141001 Vitis vinifera HOM05D005736 ORTHO05D007215 5.0e-55 218.4 178 58.4
CSS0016231 Camellia sinensis var. sinensis HOM05D005736 ORTHO05D007215 6.5e-55 218.0 187 56.7
Migut.O00559 Erythranthe guttata HOM05D005736 ORTHO05D007215 6.5e-55 218.0 187 53.5
MELO3C004216.2 Cucumis melo HOM05D005736 ORTHO05D007215 8.4e-55 217.6 183 56.8
PGSC0003DMG400024712 Solanum tuberosum HOM05D005736 ORTHO05D007215 8.4e-55 217.6 190 54.2
Gorai.007G341300 Gossypium raimondii HOM05D005736 ORTHO05D007215 1.4e-54 216.9 184 54.9
Manes.09G170200 Manihot esculenta HOM05D005736 ORTHO05D007215 1.4e-54 216.9 186 55.4
CSS0007199 Camellia sinensis var. sinensis HOM05D005736 ORTHO05D007215 1.9e-54 216.5 187 56.7
Duzib106G0969 Durio zibethinus HOM05D005736 ORTHO05D007215 2.5e-54 216.1 183 56.3
RcHm_v2.0_Chr3g0455751 Rosa chinensis HOM05D005736 ORTHO05D007215 2.5e-54 216.1 189 56.1
TAR633G1366 Trochodendron aralioides HOM05D005736 ORTHO05D007215 2.5e-54 216.1 187 55.6
Gorai.007G300100 Gossypium raimondii HOM05D005736 ORTHO05D007215 3.2e-54 215.7 183 56.3
ATR0796G081 Amborella trichopoda HOM05D005736 ORTHO05D007215 4.2e-54 215.3 185 54.6
Solyc09g065950.3 Solanum lycopersicum HOM05D005736 ORTHO05D007215 4.2e-54 215.3 194 53.1
Cc02_g34150 Coffea canephora HOM05D005736 ORTHO05D007215 5.5e-54 214.9 188 55.3
Migut.N02084 Erythranthe guttata HOM05D005736 ORTHO05D007215 7.2e-54 214.5 187 52.9
Eucgr.H04534 Eucalyptus grandis HOM05D005736 ORTHO05D007215 7.2e-54 214.5 186 58.1
Gohir.D11G277900 Gossypium hirsutum HOM05D005736 ORTHO05D007215 7.2e-54 214.5 183 56.3
MD04G1200300 Malus domestica HOM05D005736 ORTHO05D007215 9.3e-54 214.2 184 55.4
Sc09g0002940 Simmondsia chinensis HOM05D005736 ORTHO05D007215 9.3e-54 214.2 186 54.3
TWI36G0679 Tripterygium wilfordii HOM05D005736 ORTHO05D007215 9.3e-54 214.2 182 57.7
Sopen01g043240 Solanum pennellii HOM05D005736 ORTHO05D007215 1.2e-53 213.8 190 53.7
Ah.06g189800 Amaranthus hybridus HOM05D005736 ORTHO05D007215 2.7e-53 212.6 186 51.1
CiPaw.07G021500 Carya illinoinensis HOM05D005736 ORTHO05D007215 2.7e-53 212.6 182 57.1
Oeu043344.1 Olea europaea HOM05D005736 ORTHO05D007215 2.7e-53 212.6 184 52.7
Gohir.A11G268000 Gossypium hirsutum HOM05D005736 ORTHO05D007215 3.5e-53 212.2 183 56.3
Zm00001eb111300 Zea mays HOM05D005736 ORTHO05D007215 3.5e-53 212.2 187 53.5
MSTRG.20415 Avicennia marina HOM05D005736 ORTHO05D007215 4.6e-53 211.8 187 52.9
Haze_04138 Corylus avellana HOM05D005736 ORTHO05D007215 4.6e-53 211.8 182 55.5
FAN05G2751 Fragaria x ananassa HOM05D001134 ORTHO05D007215 4.6e-53 211.8 186 57.5
Potri.013G017000 Populus trichocarpa HOM05D005736 ORTHO05D007215 4.6e-53 211.8 179 55.9
TAR362G0909 Trochodendron aralioides HOM05D005736 ORTHO05D007215 4.6e-53 211.8 179 56.4
Lsat_1_v5_gn_7_69261 Lactuca sativa HOM05D005736 ORTHO05D007215 6.1e-53 211.5 187 52.9
PSO832G2303 Papaver somniferum HOM05D005736 ORTHO05D007215 6.1e-53 211.5 187 52.9
QL03p020205 Quercus lobata HOM05D005736 ORTHO05D007215 6.1e-53 211.5 182 56.0
PSO210G0197 Papaver somniferum HOM05D005736 ORTHO05D007215 7.9e-53 211.1 187 52.9
Zm00001eb330450 Zea mays HOM05D005736 ORTHO05D007215 7.9e-53 211.1 187 51.3
Potri.005G025300 Populus trichocarpa HOM05D005736 ORTHO05D007215 1.0e-52 210.7 179 55.9
Sabra13G0020000 Salix brachista HOM05D005736 ORTHO05D007215 1.0e-52 210.7 179 55.9
Aa31LG5G15870 Aethionema arabicum HOM05D005736 ORTHO05D007215 1.3e-52 210.3 188 53.7
COL.COLO4_10521 Corchorus olitorius HOM05D005736 ORTHO05D007215 1.3e-52 210.3 183 55.7
FAN02G0934 Fragaria x ananassa HOM05D005736 ORTHO05D007215 1.3e-52 210.3 213 50.2
HanXRQChr16g0513361 Helianthus annuus HOM05D005736 ORTHO05D007215 1.8e-52 209.9 185 53.5
SGA_v2.0_scaffold196G40952 Striga asiatica HOM05D005736 ORTHO05D007215 2.3e-52 209.5 185 51.9
FAN09G2204 Fragaria x ananassa HOM05D001134 ORTHO05D007215 3.0e-52 209.1 184 56.0
Sabra13G0015800 Salix brachista HOM05D005736 ORTHO05D007215 3.0e-52 209.1 179 55.3
THA.LOC104818718 Tarenaya hassleriana HOM05D005736 ORTHO05D007215 3.9e-52 208.8 188 53.2
CDE02G3291 Ceratophyllum demersum HOM05D005736 ORTHO05D007215 5.1e-52 208.4 186 53.8
AL3G16120 Arabidopsis lyrata HOM05D005736 ORTHO05D007215 3.3e-51 205.7 188 51.6
AUR62000762 Chenopodium quinoa HOM05D005736 ORTHO05D007215 3.3e-51 205.7 185 50.3
AUR62005207 Chenopodium quinoa HOM05D005736 ORTHO05D007215 3.3e-51 205.7 185 50.3
AT3G05520 Arabidopsis thaliana HOM05D005736 ORTHO05D007215 9.7e-51 204.1 188 51.6
HPP92_002147 Vanilla planifolia HOM05D005736 ORTHO05D007215 1.3e-50 203.8 185 52.4
BraA03t12591Z Brassica rapa HOM05D005736 ORTHO05D007215 1.6e-50 203.4 188 52.1
Carub.0003s0481 Capsella rubella HOM05D005736 ORTHO05D007215 1.6e-50 203.4 189 51.3
A03p34170 Brassica napus HOM05D005736 ORTHO05D007215 2.8e-50 202.6 188 51.6
Thhalv10021069m.g Eutrema salsugineum HOM05D005736 ORTHO05D007215 2.8e-50 202.6 188 51.6
HanXRQChr10g0296691 Helianthus annuus HOM05D005736 ORTHO05D007215 6.3e-50 201.4 186 52.2
SMO196G0013 Selaginella moellendorffii HOM05D005736 ORTHO05D007215 6.3e-50 201.4 179 54.2
Sp3g04350 Schrenkiella parvula HOM05D005736 ORTHO05D007215 8.2e-50 201.1 187 50.8
BolC3t16437H Brassica oleracea HOM05D005736 ORTHO05D007215 1.4e-49 200.3 188 51.1
vmacro04813 Vaccinium macrocarpon HOM05D005736 ORTHO05D007215 2.4e-49 199.5 205 48.8
BNapus_Darmor_BZH_scaffold_114p00020 Brassica napus HOM05D005736 ORTHO05D007215 5.3e-49 198.4 188 50.5
CARHR079910 Cardamine hirsuta HOM05D005736 ORTHO05D007215 5.3e-49 198.4 187 50.8
BraSC132t45500Z Brassica rapa HOM05D005736 ORTHO05D007215 6.9e-49 198.0 188 50.5
BcaB04g19260 Brassica carinata HOM05D005736 ORTHO05D007215 1.2e-48 197.2 188 50.5
BcaC09g47830 Brassica carinata HOM05D005736 ORTHO05D007215 1.2e-48 197.2 188 50.5
Cfa006630 Carpinus fangiana HOM05D005736 ORTHO05D007215 1.2e-48 197.2 182 53.8
BolC1t05691H Brassica oleracea HOM05D005736 ORTHO05D007215 1.0e-47 194.1 188 50.0
FAN14G1274 Fragaria x ananassa HOM05D001134 ORTHO05D001035 1.3e-47 193.7 194 51.5
unitig_46.g18363 Utricularia gibba HOM05D005736 ORTHO05D007215 1.3e-47 193.7 185 50.8
C03p41560 Brassica napus HOM05D005736 ORTHO05D007215 2.2e-47 193.0 188 50.0
ECA234G1428 Erigeron canadensis HOM05D005736 ORTHO05D007215 2.2e-47 193.0 179 49.2
BcaB04g19261 Brassica carinata HOM05D005736 ORTHO05D007215 3.8e-47 192.2 188 49.5
Rhsim07G0188500 Rhododendron simsii HOM05D002832 ORTHO05D008667 5.1e-44 181.8 260 38.8
unitig_48.g30289 Utricularia gibba HOM05D005736 ORTHO05D007215 2.2e-42 176.4 185 47.6
Dinv30811 Davidia involucrata HOM05D005736 ORTHO05D007215 1.0e-39 167.5 167 47.9
unitig_46.g18374 Utricularia gibba HOM05D005736 ORTHO05D007215 1.3e-39 167.2 144 54.9
Actinidia35560 Actinidia chinensis HOM05D002832 ORTHO05D008667 8.5e-39 164.5 189 46.6
RcHm_v2.0_Chr1g0322051 Rosa chinensis HOM05D005736 ORTHO05D007215 2.1e-37 159.8 129 58.1
MBI18_g08112_MAGBIO Magnolia biondii HOM05D005736 ORTHO05D007215 2.7e-37 159.5 130 57.7
BcaB04g21446 Brassica carinata HOM05D005736 ORTHO05D007215 1.1e-35 154.1 128 58.6
Actinidia16813 Actinidia chinensis HOM05D005736 ORTHO05D007215 2.0e-35 153.3 127 58.3
Gohir.D11G309300 Gossypium hirsutum HOM05D005736 ORTHO05D007215 4.8e-34 148.7 119 56.3
MBI18_g44147_MAGBIO Magnolia biondii HOM05D005736 ORTHO05D007215 1.0e-28 131.0 105 58.1
Nitab4.5_0003658g0100 Nicotiana tabacum HOM05D001134 ORTHO05D001035 4.0e-28 129.0 107 57.0
Os07g0414800 Oryza sativa ssp. japonica HOM05D005736 ORTHO05D007215 1.7e-26 123.6 97 59.8
RcHm_v2.0_Chr1g0322151 Rosa chinensis HOM05D005736 ORTHO05D007215 2.2e-26 123.2 102 54.9
TAR636G3309 Trochodendron aralioides HOM05D005736 ORTHO05D007215 7.7e-24 114.8 97 52.6
TAR629G2822 Trochodendron aralioides HOM05D005736 ORTHO05D007215 1.3e-23 114.0 103 53.4
BcaB05g23235 Brassica carinata HOM05D005736 ORTHO05D007215 3.0e-20 102.8 150 35.3
RcHm_v2.0_Chr1g0327431 Rosa chinensis HOM05D005736 ORTHO05D007215 2.8e-18 96.3 81 55.6
unitig_48.g30291 Utricularia gibba HOM05D003281 ORTHO05D004128 6.5e-15 85.1 74 52.7
Nitab4.5_0018629g0010 Nicotiana tabacum HOM05D005736 ORTHO05D007215 2.0e-11 73.6 58 56.9
Sopen09g027740 Solanum pennellii HOM05D005736 ORTHO05D007215 7.5e-11 71.6 58 55.2
RcHm_v2.0_Chr3g0465741 Rosa chinensis HOM05D005736 ORTHO05D007215 7.7e-08 61.6 69 43.5
RcHm_v2.0_Chr1g0322221 Rosa chinensis HOM05D005736 ORTHO05D007215 1.3e-07 60.8 55 50.9
Lj5A420T26 Lonicera japonica HOM05D005736 ORTHO05D007215 3.3e-06 56.2 59 47.5


User provided reference genes

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