Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c20_22990 Physcomitrium patens HOM05D022188 ORTHO05D006797 0.0e+00 2064.7 1129 100.0
Pp3c23_10180 Physcomitrium patens HOM05D022188 ORTHO05D006797 0.0e+00 1141.7 1181 57.9
AagrBONN_evm.TU.Sc2ySwM_344.1815 Anthoceros agrestis HOM05D022188 ORTHO05D006797 5.5e-50 204.1 687 29.4
Pp3c16_7650 Physcomitrium patens HOM05D026113 ORTHO05D006797 2.8e-46 191.8 1039 26.6
Mapoly0060s0031 Marchantia polymorpha HOM05D022188 ORTHO05D006797 4.8e-46 191.0 738 30.5
Pp3c6_9630 Physcomitrium patens HOM05D026113 ORTHO05D006797 2.8e-30 138.7 709 25.0
SEGI_29391 Sequoiadendron giganteum HOM05D022188 ORTHO05D006797 3.7e-30 138.3 697 25.8
Pp3c10_11042 Physcomitrium patens HOM05D026113 ORTHO05D006797 3.4e-23 115.2 691 25.2
Actinidia06328 Actinidia chinensis HOM05D006039 ORTHO05D006797 5.4e-13 81.3 92 48.9
Pp3c14_25220 Physcomitrium patens HOM05D026113 ORTHO05D006797 9.2e-13 80.5 708 24.2
Manes.14G013400 Manihot esculenta HOM05D006039 ORTHO05D006797 2.7e-12 79.0 134 38.1
Solyc11g056640.3 Solanum lycopersicum HOM05D006039 ORTHO05D006797 2.7e-12 79.0 92 48.9
Cpa.g.sc84.90 Carica papaya HOM05D006039 ORTHO05D006797 3.5e-12 78.6 92 46.7
PSO339G2813 Papaver somniferum HOM05D006039 ORTHO05D006797 3.5e-12 78.6 130 34.6
DCAR_002046 Daucus carota HOM05D006039 ORTHO05D006797 4.6e-12 78.2 92 46.7
Lj3g0020392 Lotus japonicus HOM05D006039 ORTHO05D006797 4.6e-12 78.2 108 48.1
Cfa009721 Carpinus fangiana HOM05D006039 ORTHO05D006797 6.0e-12 77.8 92 47.8
Eucgr.B03667 Eucalyptus grandis HOM05D006039 ORTHO05D006797 7.8e-12 77.4 103 44.7
Sc16g0011650 Simmondsia chinensis HOM05D006039 ORTHO05D006797 7.8e-12 77.4 119 40.3
Haze_23073 Corylus avellana HOM05D006039 ORTHO05D006797 1.3e-11 76.6 92 46.7
Gohir.D13G219700 Gossypium hirsutum HOM05D006039 ORTHO05D006797 1.7e-11 76.3 100 43.0
TWI32G0154 Tripterygium wilfordii HOM05D006039 ORTHO05D006797 1.7e-11 76.3 92 46.7
CSS0020882 Camellia sinensis var. sinensis HOM05D006039 ORTHO05D006797 2.3e-11 75.9 92 44.6
CSS0048119 Camellia sinensis var. sinensis HOM05D006039 ORTHO05D006797 2.3e-11 75.9 92 44.6
PSO384G3161 Papaver somniferum HOM05D006039 ORTHO05D006797 2.3e-11 75.9 130 36.2
Medtr2g098330 Medicago truncatula HOM05D006039 ORTHO05D006797 3.0e-11 75.5 91 48.4
Peaxi162Scf00839g00234 Petunia axillaris HOM05D006039 ORTHO05D006797 3.0e-11 75.5 92 46.7
Nitab4.5_0002278g0050 Nicotiana tabacum HOM05D006039 ORTHO05D006797 3.9e-11 75.1 92 44.6
Gohir.A13G216000 Gossypium hirsutum HOM05D006039 ORTHO05D006797 5.0e-11 74.7 96 42.7
Lj1C361T2 Lonicera japonica HOM05D006039 ORTHO05D006797 5.0e-11 74.7 92 46.7
Nitab4.5_0000175g0040 Nicotiana tabacum HOM05D006039 ORTHO05D006797 5.0e-11 74.7 92 44.6
SGA_v2.0_scaffold247G44833 Striga asiatica HOM05D006039 ORTHO05D006797 5.0e-11 74.7 94 46.8
TAR623G0385 Trochodendron aralioides HOM05D006039 ORTHO05D006797 5.0e-11 74.7 120 35.8
CiPaw.14G122300 Carya illinoinensis HOM05D006039 ORTHO05D006797 6.6e-11 74.3 92 46.7
THA.LOC104804971 Tarenaya hassleriana HOM05D006039 ORTHO05D006797 8.6e-11 73.9 92 46.7
MD11G1028000 Malus domestica HOM05D006039 ORTHO05D006797 1.1e-10 73.6 111 37.8
Psat5g288280 Pisum sativum HOM05D006039 ORTHO05D006797 1.1e-10 73.6 92 44.6
Ciclev10014934m.g Citrus clementina HOM05D006039 ORTHO05D006797 1.5e-10 73.2 92 44.6
COL.COLO4_24829 Corchorus olitorius HOM05D006039 ORTHO05D006797 1.5e-10 73.2 129 38.0
Sed0010144 Sechium edule HOM05D006039 ORTHO05D006797 1.5e-10 73.2 92 44.6
Thecc.09G226300 Theobroma cacao HOM05D006039 ORTHO05D006797 1.9e-10 72.8 128 35.2
Prupe.6G022100 Prunus persica HOM05D006039 ORTHO05D006797 2.5e-10 72.4 92 44.6
TPR.G377 Trifolium pratense HOM05D006039 ORTHO05D006797 2.5e-10 72.4 87 46.0
MSTRG.12478 Avicennia marina HOM05D006039 ORTHO05D006797 3.3e-10 72.0 114 41.2
Atru.chr3.2554 Acer truncatum HOM05D006039 ORTHO05D006797 4.3e-10 71.6 92 45.7
Ah.06g193560 Amaranthus hybridus HOM05D006039 ORTHO05D006797 4.3e-10 71.6 105 42.9
AL6G23500 Arabidopsis lyrata HOM05D006039 ORTHO05D006797 4.3e-10 71.6 88 47.7
Duzib150G0354 Durio zibethinus HOM05D006039 ORTHO05D006797 4.3e-10 71.6 92 43.5
Hund07543 Selenicereus undatus HOM05D006039 ORTHO05D006797 4.3e-10 71.6 101 42.6
Aqoxy3G00443 Aquilegia oxysepala HOM05D006039 ORTHO05D006797 5.6e-10 71.2 113 37.2
ECA233G1597 Erigeron canadensis HOM05D006039 ORTHO05D006797 5.6e-10 71.2 92 46.7
Phvul.L011043 Phaseolus vulgaris HOM05D006039 ORTHO05D006797 5.6e-10 71.2 217 28.6
Rhsim01G0190000 Rhododendron simsii HOM05D006039 ORTHO05D006797 5.6e-10 71.2 92 43.5
Aa31LG3G14700 Aethionema arabicum HOM05D006389 ORTHO05D007863 1.2e-09 70.1 92 44.6
HanXRQChr13g0403991 Helianthus annuus HOM05D006039 ORTHO05D006797 1.2e-09 70.1 92 44.6
Migut.N02301 Erythranthe guttata HOM05D006039 ORTHO05D006797 1.6e-09 69.7 94 43.6
MSTRG.17577 Avicennia marina HOM05D006039 ORTHO05D006797 2.1e-09 69.3 95 44.2
Carub.0006s1111 Capsella rubella HOM05D006039 ORTHO05D006797 2.8e-09 68.9 91 45.1
MELO3C014616.2 Cucumis melo HOM05D006039 ORTHO05D006797 3.6e-09 68.6 109 39.4
MBI01_g36435_MAGBIO Magnolia biondii HOM05D006039 ORTHO05D006797 3.6e-09 68.6 128 34.4
VMungo1080G1590 Vigna mungo HOM05D006039 ORTHO05D006797 3.6e-09 68.6 88 45.5
arahy.Tifrunner.gnm1.ann1.CQR7QS Arachis hypogaea HOM05D006039 ORTHO05D006797 6.2e-09 67.8 92 44.6
arahy.Tifrunner.gnm1.ann1.IJ2E5N Arachis hypogaea HOM05D006039 ORTHO05D006797 6.2e-09 67.8 92 44.6
ClCG02G023440 Citrullus lanatus HOM05D006039 ORTHO05D006797 6.2e-09 67.8 92 41.3
PGR102G2927 Punica granatum HOM05D006039 ORTHO05D006797 6.2e-09 67.8 121 36.4
GSVIVG01025314001 Vitis vinifera HOM05D006039 ORTHO05D006797 6.2e-09 67.8 116 38.8
Cc01_g04400 Coffea canephora HOM05D006039 ORTHO05D006797 8.1e-09 67.4 115 35.7
CsaV3_4G024070 Cucumis sativus L. HOM05D006039 ORTHO05D006797 8.1e-09 67.4 92 40.2
Nn7g36093 Nelumbo nucifera HOM05D006039 ORTHO05D006797 8.1e-09 67.4 85 40.0
Lsat_1_v5_gn_1_67181 Lactuca sativa HOM05D006039 ORTHO05D006797 1.1e-08 67.0 71 52.1
RcHm_v2.0_Chr5g0077351 Rosa chinensis HOM05D006039 ORTHO05D006797 1.1e-08 67.0 104 37.5
Duzib168G2100 Durio zibethinus HOM05D006039 ORTHO05D006797 1.4e-08 66.6 125 33.6
ATR0815G050 Amborella trichopoda HOM05D006039 ORTHO05D006797 1.8e-08 66.2 236 26.7
AUR62000084 Chenopodium quinoa HOM05D006039 ORTHO05D000067 3.1e-08 65.5 121 37.2
THA.LOC104799094 Tarenaya hassleriana HOM05D006039 ORTHO05D006797 4.0e-08 65.1 92 44.6
Manes.06G167800 Manihot esculenta HOM05D006039 ORTHO05D006797 6.8e-08 64.3 93 39.8
Os09g0488600 Oryza sativa ssp. japonica HOM05D006039 ORTHO05D006797 6.8e-08 64.3 91 36.3
Lalb_Chr22g0352291 Lupinus albus HOM05D006039 ORTHO05D006797 1.2e-07 63.5 103 44.7
Oeu014066.1 Olea europaea HOM05D006039 ORTHO05D006797 1.2e-07 63.5 94 40.4
Potri.003G207400 Populus trichocarpa HOM05D006039 ORTHO05D006797 1.2e-07 63.5 149 31.5
Dinv36292 Davidia involucrata HOM05D006039 ORTHO05D006797 1.5e-07 63.2 92 38.0
FAN11G0272 Fragaria x ananassa HOM05D006039 ORTHO05D006797 1.5e-07 63.2 99 38.4
FAN25G3739 Fragaria x ananassa HOM05D006039 ORTHO05D006797 1.5e-07 63.2 99 38.4
QL01p005703 Quercus lobata HOM05D006039 ORTHO05D006797 1.5e-07 63.2 88 43.2
vmacro12713 Vaccinium macrocarpon HOM05D006039 ORTHO05D006797 2.0e-07 62.8 75 42.7
Sabra01G0012000 Salix brachista HOM05D006039 ORTHO05D006797 2.6e-07 62.4 97 40.2
SalBow4G0075 Salvia bowleyana HOM05D006039 ORTHO05D006797 2.6e-07 62.4 94 38.3
SalBow4G2759 Salvia bowleyana HOM05D006039 ORTHO05D006797 2.6e-07 62.4 94 38.3
MELO3C003056.2 Cucumis melo HOM05D006039 ORTHO05D006797 3.4e-07 62.0 92 38.0
Potri.001G017100 Populus trichocarpa HOM05D006039 ORTHO05D006797 3.4e-07 62.0 97 40.2
BcaNung03603 Brassica carinata HOM05D006039 ORTHO05D006797 4.4e-07 61.6 77 46.8
Lalb_Chr24g0396971 Lupinus albus HOM05D006039 ORTHO05D006797 4.4e-07 61.6 97 39.2
BraA03t09909Z Brassica rapa HOM05D006039 ORTHO05D006797 5.8e-07 61.2 93 43.0
FAN21G1726 Fragaria x ananassa HOM05D006039 ORTHO05D006797 7.5e-07 60.8 99 37.4
CANSAT54G2219 Cannabis sativa HOM05D006039 ORTHO05D006797 3.7e-06 58.5 92 40.2
Glyma.13G341800 Glycine max HOM05D006039 ORTHO05D006797 3.7e-06 58.5 104 38.5
Zm00001eb101890 Zea mays HOM05D006039 ORTHO05D006797 3.7e-06 58.5 118 36.4
Migut.D00567 Erythranthe guttata HOM05D006039 ORTHO05D006797 4.9e-06 58.2 112 34.8
EL10Ac4g10308 Beta vulgaris HOM05D006039 ORTHO05D006797 6.4e-06 57.8 92 42.4


User provided reference genes

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