Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c20_22830 Physcomitrium patens HOM05D003199 ORTHO05D003528 1.9e-85 319.3 178 100.0
Pp3c10_22890 Physcomitrium patens HOM05D003199 ORTHO05D003528 7.1e-69 264.2 180 81.7
Pp3c23_14280 Physcomitrium patens HOM05D003199 ORTHO05D003528 2.8e-49 199.1 184 65.8
Pp3c24_1550 Physcomitrium patens HOM05D003199 ORTHO05D003528 9.0e-48 194.1 180 67.8
AagrBONN_evm.TU.Sc2ySwM_344.1902 Anthoceros agrestis HOM05D003199 ORTHO05D003528 5.5e-29 131.7 129 61.2
AagrBONN_evm.TU.Sc2ySwM_228.1446 Anthoceros agrestis HOM05D003199 ORTHO05D003528 5.1e-27 125.2 181 48.1
Mapoly0090s0063 Marchantia polymorpha HOM05D003199 ORTHO05D003528 2.8e-25 119.4 188 51.1
CBR_g8368 Chara braunii HOM05D003199 ORTHO05D003528 1.0e-19 100.9 147 45.6
Glyma.05G044800 Glycine max HOM05D003199 ORTHO05D003528 4.8e-17 92.0 79 53.2
Mapoly0066s0099 Marchantia polymorpha HOM05D003199 ORTHO05D003528 2.4e-16 89.7 80 52.5
VMungo1215G0313 Vigna mungo HOM05D003199 ORTHO05D003528 1.2e-15 87.4 77 49.4
CsaV3_3G027140 Cucumis sativus L. HOM05D003199 ORTHO05D003528 1.7e-14 83.6 123 39.8
MELO3C014875.2 Cucumis melo HOM05D003199 ORTHO05D003528 2.2e-14 83.2 100 44.0
ClCG05G013420 Citrullus lanatus HOM05D003199 ORTHO05D003528 2.9e-14 82.8 123 38.2
DCAR_026209 Daucus carota HOM05D003199 ORTHO05D003528 3.8e-14 82.4 134 36.6
Sabra16G0212600 Salix brachista HOM05D003199 ORTHO05D003528 5.0e-14 82.0 97 44.3
Aqoxy5G03579 Aquilegia oxysepala HOM05D003199 ORTHO05D003528 8.5e-14 81.3 132 36.4
AUR62003498 Chenopodium quinoa HOM05D003199 ORTHO05D003528 8.5e-14 81.3 116 42.2
Lalb_Chr02g0157721 Lupinus albus HOM05D003199 ORTHO05D003528 1.1e-13 80.9 81 48.1
MD17G1012600 Malus domestica HOM05D003199 ORTHO05D003528 1.4e-13 80.5 130 40.8
CAN.G1491.4 Capsicum annuum HOM05D003199 ORTHO05D003528 2.5e-13 79.7 132 39.4
CAN.G473.92 Capsicum annuum HOM05D003199 ORTHO05D003528 4.2e-13 79.0 82 43.9
Oeu011754.1 Olea europaea HOM05D003199 ORTHO05D003528 5.5e-13 78.6 85 45.9
Sed0014935 Sechium edule HOM05D003199 ORTHO05D003528 5.5e-13 78.6 86 44.2
Prupe.3G305100 Prunus persica HOM05D003199 ORTHO05D003528 9.4e-13 77.8 102 41.2
arahy.Tifrunner.gnm1.ann1.S1U1UA Arachis hypogaea HOM05D003199 ORTHO05D003528 1.2e-12 77.4 74 48.6
Nitab4.5_0000040g0380 Nicotiana tabacum HOM05D003199 ORTHO05D003528 1.2e-12 77.4 96 42.7
Ca_14371_v3 Cicer arietinum L. HOM05D003199 ORTHO05D003528 1.6e-12 77.0 119 41.2
Eucgr.I01653 Eucalyptus grandis HOM05D003199 ORTHO05D003528 1.6e-12 77.0 86 41.9
Nitab4.5_0002911g0010 Nicotiana tabacum HOM05D003199 ORTHO05D003528 2.1e-12 76.6 136 37.5
Lj2g0014633 Lotus japonicus HOM05D003199 ORTHO05D003528 3.6e-12 75.9 115 37.4
MSTRG.4586 Avicennia marina HOM05D003199 ORTHO05D003528 8.0e-12 74.7 147 34.0
Ca_05564_v3 Cicer arietinum L. HOM05D003199 ORTHO05D003528 8.0e-12 74.7 107 41.1
Duzib147G1480 Durio zibethinus HOM05D003199 ORTHO05D003528 8.0e-12 74.7 91 40.7
Lju41C52T19 Lonicera japonica HOM05D003199 ORTHO05D003528 8.0e-12 74.7 86 47.7
Lj4g0002784 Lotus japonicus HOM05D003199 ORTHO05D003528 8.0e-12 74.7 78 44.9
MCO05G682 Micromonas commoda HOM05D003199 ORTHO05D003528 8.0e-12 74.7 70 54.3
CiPaw.12G035800 Carya illinoinensis HOM05D003199 ORTHO05D003528 1.4e-11 73.9 64 50.0
Glyma.17G181000 Glycine max HOM05D003199 ORTHO05D003528 1.4e-11 73.9 89 40.4
Solyc02g068090.3 Solanum lycopersicum HOM05D003199 ORTHO05D003528 2.3e-11 73.2 109 39.4
PGSC0003DMG400006976 Solanum tuberosum HOM05D003199 ORTHO05D003528 2.3e-11 73.2 109 39.4
Potri.001G331600 Populus trichocarpa HOM05D003199 ORTHO05D003528 3.0e-11 72.8 97 41.2
Migut.F00072 Erythranthe guttata HOM05D003199 ORTHO05D003528 3.9e-11 72.4 95 42.1
HanXRQChr05g0154721 Helianthus annuus HOM05D003199 ORTHO05D003528 5.2e-11 72.0 84 40.5
Glyma.19G090000 Glycine max HOM05D003199 ORTHO05D003528 6.7e-11 71.6 69 44.9
Psat4g062640 Pisum sativum HOM05D003199 ORTHO05D003528 6.7e-11 71.6 116 37.9
Potri.012G092700 Populus trichocarpa HOM05D003199 ORTHO05D003528 6.7e-11 71.6 138 34.1
PGR142G2189 Punica granatum HOM05D003199 ORTHO05D003528 1.1e-10 70.9 67 49.3
THA.LOC104823979 Tarenaya hassleriana HOM05D003199 ORTHO05D003528 1.1e-10 70.9 75 42.7
Glyma.05G077200 Glycine max HOM05D003199 ORTHO05D003528 1.5e-10 70.5 77 41.6
Sopen02g017200 Solanum pennellii HOM05D003199 ORTHO05D003528 2.0e-10 70.1 108 35.2
Gohir.A09G035300 Gossypium hirsutum HOM05D003199 ORTHO05D003528 2.6e-10 69.7 58 51.7
Gohir.D09G036100 Gossypium hirsutum HOM05D003199 ORTHO05D003528 2.6e-10 69.7 58 51.7
Gorai.006G041200 Gossypium raimondii HOM05D003199 ORTHO05D003528 2.6e-10 69.7 58 51.7
Medtr4g104210 Medicago truncatula HOM05D003199 ORTHO05D003528 3.3e-10 69.3 106 40.6
Nn1g07337 Nelumbo nucifera HOM05D003199 ORTHO05D003528 3.3e-10 69.3 112 39.3
DCAR_002949 Daucus carota HOM05D003199 ORTHO05D003528 4.4e-10 68.9 92 39.1
VMungo1383G1719 Vigna mungo HOM05D003199 ORTHO05D003528 4.4e-10 68.9 100 38.0
Dinv38468 Davidia involucrata HOM05D003199 ORTHO05D003528 5.7e-10 68.6 62 46.8
Sc07g0004150 Simmondsia chinensis HOM05D003199 ORTHO05D003528 5.7e-10 68.6 106 41.5
TAR622G0507 Trochodendron aralioides HOM05D003199 ORTHO05D003528 5.7e-10 68.6 70 48.6
Atru.chr6.2549 Acer truncatum HOM05D003199 ORTHO05D003528 7.4e-10 68.2 75 44.0
Atru.chr6.2557 Acer truncatum HOM05D003199 ORTHO05D003528 7.4e-10 68.2 75 44.0
Ciclev10016867m.g Citrus clementina HOM05D003199 ORTHO05D003528 7.4e-10 68.2 111 40.5
COL.COLO4_17189 Corchorus olitorius HOM05D003199 ORTHO05D003528 7.4e-10 68.2 58 50.0
RcHm_v2.0_Chr2g0175441 Rosa chinensis HOM05D003199 ORTHO05D003528 7.4e-10 68.2 72 44.4
arahy.Tifrunner.gnm1.ann1.NFT2PX Arachis hypogaea HOM05D003199 ORTHO05D003528 9.7e-10 67.8 68 47.1
Eucgr.J02332 Eucalyptus grandis HOM05D003199 ORTHO05D003528 9.7e-10 67.8 72 45.8
arahy.Tifrunner.gnm1.ann1.Z1YI97 Arachis hypogaea HOM05D003199 ORTHO05D003528 1.3e-09 67.4 65 49.2
Lsat_1_v5_gn_2_94161 Lactuca sativa HOM05D003199 ORTHO05D003528 1.7e-09 67.0 112 39.3
CiPaw.03G054500 Carya illinoinensis HOM05D003199 ORTHO05D003528 2.2e-09 66.6 74 45.9
CiPaw.04G036100 Carya illinoinensis HOM05D003199 ORTHO05D003528 2.2e-09 66.6 68 47.1
AUR62017813 Chenopodium quinoa HOM05D003199 ORTHO05D003528 2.2e-09 66.6 91 42.9
HanXRQChr14g0450701 Helianthus annuus HOM05D003199 ORTHO05D003528 2.2e-09 66.6 58 50.0
Hma1.2p1_1278F.1_g272370 Hydrangea macrophylla HOM05D003199 ORTHO05D003528 2.8e-09 66.2 108 34.3
Oeu011964.1 Olea europaea HOM05D003199 ORTHO05D003528 2.8e-09 66.2 123 35.0
THA.LOC104825617 Tarenaya hassleriana HOM05D003199 ORTHO05D003528 2.8e-09 66.2 74 43.2
Haze_14863 Corylus avellana HOM05D003199 ORTHO05D003528 3.7e-09 65.9 62 48.4
Thhalv10004988m.g Eutrema salsugineum HOM05D003199 ORTHO05D003528 3.7e-09 65.9 82 41.5
FvH4_6g53290 Fragaria vesca HOM05D003199 ORTHO05D003528 3.7e-09 65.9 78 41.0
FAN02G1758 Fragaria x ananassa HOM05D003199 ORTHO05D003528 3.7e-09 65.9 71 43.7
FAN14G1306 Fragaria x ananassa HOM05D003199 ORTHO05D003528 3.7e-09 65.9 71 43.7
Actinidia05917 Actinidia chinensis HOM05D003199 ORTHO05D003528 4.8e-09 65.5 57 50.9
Actinidia36194 Actinidia chinensis HOM05D003199 ORTHO05D003528 4.8e-09 65.5 57 50.9
QL10p005054 Quercus lobata HOM05D003199 ORTHO05D003528 4.8e-09 65.5 80 45.0
HanXRQChr07g0198271 Helianthus annuus HOM05D003199 ORTHO05D003528 6.3e-09 65.1 113 37.2
PSO782G3015 Papaver somniferum HOM05D003199 ORTHO05D003528 6.3e-09 65.1 101 39.6
Phvul.001G094500 Phaseolus vulgaris HOM05D003199 ORTHO05D003528 6.3e-09 65.1 79 39.2
Prupe.5G156900 Prunus persica HOM05D003199 ORTHO05D003528 6.3e-09 65.1 84 35.7
Sp2g16270 Schrenkiella parvula HOM05D003199 ORTHO05D003528 6.3e-09 65.1 82 41.5
TAR374G1096 Trochodendron aralioides HOM05D003199 ORTHO05D003528 6.3e-09 65.1 114 38.6
Ciclev10022507m.g Citrus clementina HOM05D003199 ORTHO05D003528 8.2e-09 64.7 123 37.4
FAN05G2482 Fragaria x ananassa HOM05D003199 ORTHO05D003528 8.2e-09 64.7 61 49.2
PSO063G5134 Papaver somniferum HOM05D003199 ORTHO05D003528 8.2e-09 64.7 101 39.6
Duzib205G0007 Durio zibethinus HOM05D003199 ORTHO05D003528 1.1e-08 64.3 65 44.6
ECA246G3163 Erigeron canadensis HOM05D003199 ORTHO05D003528 1.1e-08 64.3 118 33.9
Eucgr.B00147 Eucalyptus grandis HOM05D003199 ORTHO05D003528 1.1e-08 64.3 69 43.5
MSTRG.3260 Avicennia marina HOM05D003199 ORTHO05D003528 1.4e-08 63.9 58 48.3
Cpa.g.sc1017.1 Carica papaya HOM05D003199 ORTHO05D003528 1.4e-08 63.9 60 45.0
Cc07_g00740 Coffea canephora HOM05D003199 ORTHO05D003528 1.4e-08 63.9 108 37.0
Eucgr.L01336 Eucalyptus grandis HOM05D003199 ORTHO05D003528 1.4e-08 63.9 56 48.2
Phvul.004G054500 Phaseolus vulgaris HOM05D003199 ORTHO05D003528 1.4e-08 63.9 70 44.3
PGR083G2021 Punica granatum HOM05D003199 ORTHO05D003528 1.4e-08 63.9 88 38.6
QL02p071628 Quercus lobata HOM05D003199 ORTHO05D003528 1.4e-08 63.9 71 42.3
PGSC0003DMG400015257 Solanum tuberosum HOM05D003199 ORTHO05D003528 1.4e-08 63.9 121 37.2
AL5G16270 Arabidopsis lyrata HOM05D003199 ORTHO05D003528 1.8e-08 63.5 62 46.8
AT3G27160 Arabidopsis thaliana HOM05D003199 ORTHO05D003528 1.8e-08 63.5 62 46.8
Carub.0005s0539 Capsella rubella HOM05D003199 ORTHO05D003528 1.8e-08 63.5 82 40.2
CARHR148360 Cardamine hirsuta HOM05D003199 ORTHO05D003528 1.8e-08 63.5 62 46.8
unitig_52.g17653 Utricularia gibba HOM05D003199 ORTHO05D003528 1.8e-08 63.5 86 41.9
Glyma.19G071300 Glycine max HOM05D003199 ORTHO05D003528 2.4e-08 63.2 62 45.2
Atru.chr9.1013 Acer truncatum HOM05D003199 ORTHO05D003528 3.1e-08 62.8 92 34.8
CSS0036982 Camellia sinensis var. sinensis HOM05D003199 ORTHO05D003528 3.1e-08 62.8 59 45.8
AUR62025727 Chenopodium quinoa HOM05D003199 ORTHO05D003528 3.1e-08 62.8 65 52.3
Migut.D01231 Erythranthe guttata HOM05D003199 ORTHO05D003528 3.1e-08 62.8 90 41.1
Gorai.012G087400 Gossypium raimondii HOM05D003199 ORTHO05D003528 3.1e-08 62.8 54 50.0
EL10Ac6g15370 Beta vulgaris HOM05D003199 ORTHO05D003528 4.1e-08 62.4 100 35.0
AUR62001279 Chenopodium quinoa HOM05D003199 ORTHO05D003528 4.1e-08 62.4 102 41.2
Lalb_Chr24g0403341 Lupinus albus HOM05D003199 ORTHO05D003528 4.1e-08 62.4 102 35.3
Medtr7g029325 Medicago truncatula HOM05D003199 ORTHO05D003528 4.1e-08 62.4 79 38.0
Nitab4.5_0010637g0020 Nicotiana tabacum HOM05D003199 ORTHO05D003528 4.1e-08 62.4 90 37.8
Solyc03g110930.3 Solanum lycopersicum HOM05D003199 ORTHO05D003528 4.1e-08 62.4 155 33.5
VMungo0464G0590 Vigna mungo HOM05D003199 ORTHO05D003528 4.1e-08 62.4 78 38.5
RcHm_v2.0_Chr2g0088911 Rosa chinensis HOM05D003199 ORTHO05D003528 5.3e-08 62.0 62 46.8
RcHm_v2.0_Chr2g0088961 Rosa chinensis HOM05D003199 ORTHO05D003528 5.3e-08 62.0 62 46.8
RcHm_v2.0_Chr2g0089001 Rosa chinensis HOM05D003199 ORTHO05D003528 5.3e-08 62.0 62 46.8
arahy.Tifrunner.gnm1.ann1.VRH5T3 Arachis hypogaea HOM05D003199 ORTHO05D003528 7.0e-08 61.6 53 49.1
Dinv33347 Davidia involucrata HOM05D003199 ORTHO05D003528 7.0e-08 61.6 57 45.6
Oeu011963.1 Olea europaea HOM05D003199 ORTHO05D003528 7.0e-08 61.6 102 37.3
SalBow4G2736 Salvia bowleyana HOM05D003199 ORTHO05D003528 7.0e-08 61.6 95 37.9
Aa31LG2G5470 Aethionema arabicum HOM05D003199 ORTHO05D003528 9.1e-08 61.2 131 32.1
BraA02t08519Z Brassica rapa HOM05D003199 ORTHO05D003528 9.1e-08 61.2 71 43.7
Aa31LG1G18700 Aethionema arabicum HOM05D003199 ORTHO05D003528 1.2e-07 60.8 118 33.1
Ah.03g147440 Amaranthus hybridus HOM05D003199 ORTHO05D003528 1.2e-07 60.8 90 40.0
BcaC03g17429 Brassica carinata HOM05D003199 ORTHO05D003528 1.2e-07 60.8 93 39.8
BolC2t11446H Brassica oleracea HOM05D003199 ORTHO05D003528 1.2e-07 60.8 93 39.8
Manes.17G103700 Manihot esculenta HOM05D003199 ORTHO05D003528 1.2e-07 60.8 57 45.6
Nitab4.5_0005418g0050 Nicotiana tabacum HOM05D003199 ORTHO05D003528 1.2e-07 60.8 100 37.0
BcaB04g19427 Brassica carinata HOM05D003199 ORTHO05D003528 1.6e-07 60.5 98 37.8
Cfa007237 Carpinus fangiana HOM05D003199 ORTHO05D003528 1.6e-07 60.5 86 39.5
unitig_52.g17266 Utricularia gibba HOM05D000147 ORTHO05D001254 1.6e-07 60.5 67 41.8
Ah.02g120420 Amaranthus hybridus HOM05D003199 ORTHO05D003528 2.0e-07 60.1 120 32.5
BcaC04g23918 Brassica carinata HOM05D003199 ORTHO05D003528 2.0e-07 60.1 63 46.0
C09p03490 Brassica napus HOM05D003199 ORTHO05D003528 2.0e-07 60.1 63 46.0
BolC9t53270H Brassica oleracea HOM05D003199 ORTHO05D003528 2.0e-07 60.1 63 46.0
BraA09t35967Z Brassica rapa HOM05D003199 ORTHO05D003528 2.0e-07 60.1 78 42.3
A02p35140 Brassica napus HOM05D003199 ORTHO05D003528 2.6e-07 59.7 110 36.4
Lsat_1_v5_gn_5_13260 Lactuca sativa HOM05D003199 ORTHO05D003528 2.6e-07 59.7 69 42.0
Thecc.04G034700 Theobroma cacao HOM05D003199 ORTHO05D003528 2.6e-07 59.7 53 47.2
Hma1.2p1_0046F.1_g027530 Hydrangea macrophylla HOM05D003199 ORTHO05D003528 3.5e-07 59.3 125 34.4
Manes.15G159800 Manihot esculenta HOM05D003199 ORTHO05D003528 3.5e-07 59.3 119 32.8
TWI36G0480 Tripterygium wilfordii HOM05D003199 ORTHO05D003528 3.5e-07 59.3 56 46.4
TAR626G1428 Trochodendron aralioides HOM05D003199 ORTHO05D003528 3.5e-07 59.3 101 37.6
C02p53770 Brassica napus HOM05D003199 ORTHO05D003528 4.5e-07 58.9 98 36.7
CANSAT64G0211 Cannabis sativa HOM05D003199 ORTHO05D003528 5.9e-07 58.5 57 45.6
Peaxi162Scf00089g00228 Petunia axillaris HOM05D003199 ORTHO05D003528 5.9e-07 58.5 127 30.7
Gohir.D04G077600 Gossypium hirsutum HOM05D003199 ORTHO05D003528 7.7e-07 58.2 113 34.5
EL10Ac7g18075 Beta vulgaris HOM05D003199 ORTHO05D003528 1.0e-06 57.8 58 46.6
BcaB07g30185 Brassica carinata HOM05D003199 ORTHO05D003528 1.0e-06 57.8 119 33.6
A09p03290 Brassica napus HOM05D003199 ORTHO05D003528 1.0e-06 57.8 107 36.4
ClCG03G003500 Citrullus lanatus HOM05D003199 ORTHO05D003528 1.0e-06 57.8 67 44.8
Sopen03g030120 Solanum pennellii HOM05D003199 ORTHO05D003528 1.0e-06 57.8 149 31.5
Gohir.A05G339100 Gossypium hirsutum HOM05D003199 ORTHO05D003528 1.3e-06 57.4 113 34.5
Gohir.A07G053400 Gossypium hirsutum HOM05D003199 ORTHO05D003528 1.3e-06 57.4 121 34.7
Nn4g22460 Nelumbo nucifera HOM05D003199 ORTHO05D003528 1.3e-06 57.4 95 40.0
CsaV3_1G009300 Cucumis sativus L. HOM05D003199 ORTHO05D003528 1.7e-06 57.0 75 45.3
FAN08G2398 Fragaria x ananassa HOM05D003199 ORTHO05D003528 1.7e-06 57.0 86 34.9
PRCOL_00002490 Prasinoderma coloniale HOM05D003199 ORTHO05D003528 1.7e-06 57.0 71 39.4
Actinidia36788 Actinidia chinensis HOM05D003199 ORTHO05D003528 2.2e-06 56.6 51 51.0
SMO164G0053 Selaginella moellendorffii HOM05D003199 ORTHO05D003528 2.2e-06 56.6 90 36.7
CDE12G0833 Ceratophyllum demersum HOM05D003199 ORTHO05D003528 3.8e-06 55.8 95 36.8
AL8G40380 Arabidopsis lyrata HOM05D003199 ORTHO05D003528 5.0e-06 55.5 118 31.4
SalBow1G6303 Salvia bowleyana HOM05D003199 ORTHO05D003528 5.0e-06 55.5 67 40.3


User provided reference genes

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