Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c20_22770 Physcomitrium patens HOM05D006382 ORTHO05D008938 0.0e+00 1093.2 535 100.0
Mapoly0179s0013 Marchantia polymorpha HOM05D006382 ORTHO05D008938 4.4e-199 698.4 499 68.3
SGA_v2.0_scaffold4G02278 Striga asiatica HOM05D006382 ORTHO05D008938 6.2e-193 677.9 483 65.0
SMO134G0292 Selaginella moellendorffii HOM05D006382 ORTHO05D008938 1.5e-191 673.3 446 70.0
MSTRG.17299 Avicennia marina HOM05D006382 ORTHO05D008938 1.1e-186 657.1 451 65.9
Dinv43864 Davidia involucrata HOM05D006382 ORTHO05D008938 4.7e-185 651.7 449 65.5
HanXRQChr17g0562131 Helianthus annuus HOM05D006382 ORTHO05D008938 2.3e-184 649.4 460 64.6
Gohir.A11G092400 Gossypium hirsutum HOM05D006382 ORTHO05D008938 6.8e-184 647.9 448 66.1
SalBow3G4256 Salvia bowleyana HOM05D006382 ORTHO05D008938 1.2e-183 647.1 471 63.3
Oeu063675.1 Olea europaea HOM05D006382 ORTHO05D008938 2.0e-183 646.4 462 64.9
Aqoxy7G00230 Aquilegia oxysepala HOM05D006382 ORTHO05D008938 2.6e-183 646.0 451 64.1
HPP92_008800 Vanilla planifolia HOM05D006382 ORTHO05D008938 5.8e-183 644.8 449 64.1
Atru.chr5.564 Acer truncatum HOM05D006382 ORTHO05D008938 1.3e-182 643.7 456 64.5
Cpa.g.sc11.72 Carica papaya HOM05D006382 ORTHO05D008938 1.3e-182 643.7 449 65.3
TWI59G0052 Tripterygium wilfordii HOM05D006382 ORTHO05D008938 1.7e-182 643.3 449 65.7
Potri.002G164700 Populus trichocarpa HOM05D006382 ORTHO05D008938 2.9e-182 642.5 449 64.6
Thecc.01G352300 Theobroma cacao HOM05D006382 ORTHO05D008938 2.9e-182 642.5 448 64.5
ECA234G1133 Erigeron canadensis HOM05D006382 ORTHO05D008938 8.4e-182 641.0 446 66.4
Nitab4.5_0000915g0130 Nicotiana tabacum HOM05D006382 ORTHO05D008938 1.9e-181 639.8 484 62.0
FvH4_7g15410 Fragaria vesca HOM05D006382 ORTHO05D008938 3.2e-181 639.0 449 65.9
MD01G1071500 Malus domestica HOM05D006382 ORTHO05D008938 3.2e-181 639.0 449 64.8
VMungo1383G3370 Vigna mungo HOM05D006382 ORTHO05D008938 3.2e-181 639.0 449 64.1
ATR0721G029 Amborella trichopoda HOM05D006382 ORTHO05D008938 4.1e-181 638.6 450 66.0
FAN01G1899 Fragaria x ananassa HOM05D006382 ORTHO05D008938 4.1e-181 638.6 449 65.9
PSO266G0056 Papaver somniferum HOM05D006382 ORTHO05D008938 4.1e-181 638.6 460 63.9
Gorai.007G103500 Gossypium raimondii HOM05D006382 ORTHO05D008938 5.4e-181 638.3 449 65.0
CiPaw.01G067600 Carya illinoinensis HOM05D006382 ORTHO05D008938 1.2e-180 637.1 449 64.1
Duzib133G1372 Durio zibethinus HOM05D006382 ORTHO05D008938 1.2e-180 637.1 448 63.6
Cfa003871 Carpinus fangiana HOM05D006382 ORTHO05D008938 2.1e-180 636.3 460 63.5
MELO3C006077.2 Cucumis melo HOM05D006382 ORTHO05D008938 2.1e-180 636.3 449 63.7
Glyma.18G238400 Glycine max HOM05D006382 ORTHO05D008938 2.7e-180 636.0 449 63.7
Phvul.008G058200 Phaseolus vulgaris HOM05D006382 ORTHO05D008938 2.7e-180 636.0 495 60.6
PSO384G0256 Papaver somniferum HOM05D006382 ORTHO05D008938 3.5e-180 635.6 478 61.9
RcHm_v2.0_Chr1g0357731 Rosa chinensis HOM05D006382 ORTHO05D008938 3.5e-180 635.6 449 65.5
vmacro13226 Vaccinium macrocarpon HOM05D006382 ORTHO05D008938 3.5e-180 635.6 468 62.4
Sc01g0003200 Simmondsia chinensis HOM05D006382 ORTHO05D008938 4.6e-180 635.2 449 65.0
THA.LOC104827604 Tarenaya hassleriana HOM05D006382 ORTHO05D008938 1.3e-179 633.6 449 63.0
Actinidia20164 Actinidia chinensis HOM05D006382 ORTHO05D008938 1.7e-179 633.3 449 64.4
Glyma.09G254600 Glycine max HOM05D006382 ORTHO05D008938 1.7e-179 633.3 494 59.9
GSVIVG01026968001 Vitis vinifera HOM05D006382 ORTHO05D008938 1.7e-179 633.3 484 61.6
Sed0009049 Sechium edule HOM05D006382 ORTHO05D008938 3.9e-179 632.1 449 63.0
CSS0031254 Camellia sinensis var. sinensis HOM05D006382 ORTHO05D008938 6.6e-179 631.3 459 63.0
Rhsim07G0010300 Rhododendron simsii HOM05D006382 ORTHO05D008938 1.1e-178 630.6 480 61.9
Lalb_Chr19g0126881 Lupinus albus HOM05D006382 ORTHO05D008938 1.9e-178 629.8 449 63.3
Hma1.2p1_0335F.1_g128860 Hydrangea macrophylla HOM05D006382 ORTHO05D008938 2.5e-178 629.4 449 64.1
CsaV3_3G008570 Cucumis sativus L. HOM05D006382 ORTHO05D008938 4.3e-178 628.6 449 62.8
Medtr7g079030 Medicago truncatula HOM05D006382 ORTHO05D008938 5.6e-178 628.2 449 62.6
Prupe.2G177700 Prunus persica HOM05D006382 ORTHO05D008938 7.3e-178 627.9 449 63.5
Atru.BG.55.p Acer truncatum HOM05D006382 ORTHO05D008938 1.2e-177 627.1 452 63.7
MBI06_g33533_MAGBIO Magnolia biondii HOM05D006382 ORTHO05D008938 2.1e-177 626.3 450 64.2
QL04p055600 Quercus lobata HOM05D006382 ORTHO05D008938 2.1e-177 626.3 449 63.9
Carub.0005s2823 Capsella rubella HOM05D006382 ORTHO05D008938 4.7e-177 625.2 449 62.6
DCAR_005361 Daucus carota HOM05D006382 ORTHO05D008938 8.1e-177 624.4 448 62.9
AT3G61540 Arabidopsis thaliana HOM05D006382 ORTHO05D008938 1.1e-176 624.0 447 63.5
Ciclev10019743m.g Citrus clementina HOM05D006382 ORTHO05D008938 1.1e-176 624.0 449 63.7
EL10Ac1g00353 Beta vulgaris HOM05D006382 ORTHO05D008938 1.8e-176 623.2 450 63.6
Lj9C589T7 Lonicera japonica HOM05D006382 ORTHO05D008938 1.8e-176 623.2 502 59.4
Sabra02G0146800 Salix brachista HOM05D006382 ORTHO05D008938 2.4e-176 622.9 449 62.8
Sopen01g038910 Solanum pennellii HOM05D006382 ORTHO05D008938 2.4e-176 622.9 481 61.5
AL5G43900 Arabidopsis lyrata HOM05D006382 ORTHO05D008938 3.1e-176 622.5 449 62.6
CARHR171860 Cardamine hirsuta HOM05D006382 ORTHO05D008938 3.1e-176 622.5 449 63.0
ClCG05G001220 Citrullus lanatus HOM05D006382 ORTHO05D008938 3.1e-176 622.5 449 62.6
Nn1g01689 Nelumbo nucifera HOM05D006382 ORTHO05D008938 3.1e-176 622.5 449 63.0
BraA07t30197Z Brassica rapa HOM05D006382 ORTHO05D008938 4.0e-176 622.1 447 62.6
Eucgr.D02325 Eucalyptus grandis HOM05D006382 ORTHO05D008938 4.0e-176 622.1 449 63.7
BcaC08g45134 Brassica carinata HOM05D006382 ORTHO05D008938 6.9e-176 621.3 447 63.1
A07p25560 Brassica napus HOM05D006382 ORTHO05D008938 6.9e-176 621.3 447 62.6
C06p27550 Brassica napus HOM05D006382 ORTHO05D008938 6.9e-176 621.3 447 63.1
FAN06G2792 Fragaria x ananassa HOM05D006382 ORTHO05D008938 9.0e-176 620.9 478 61.7
Solyc01g095120.3 Solanum lycopersicum HOM05D006382 ORTHO05D008938 9.0e-176 620.9 477 60.8
Thhalv10005890m.g Eutrema salsugineum HOM05D006382 ORTHO05D008938 1.2e-175 620.5 485 60.2
PGSC0003DMG400000065 Solanum tuberosum HOM05D006382 ORTHO05D008938 1.2e-175 620.5 477 60.8
Lj1g0001840 Lotus japonicus HOM05D006382 ORTHO05D008938 2.6e-175 619.4 480 60.0
BolC6t37923H Brassica oleracea HOM05D006382 ORTHO05D008938 3.4e-175 619.0 447 62.9
Sp5g01870 Schrenkiella parvula HOM05D006382 ORTHO05D008938 3.4e-175 619.0 449 63.3
CSS0000318 Camellia sinensis var. sinensis HOM05D006382 ORTHO05D008938 7.6e-175 617.8 452 63.3
CDE10G0280 Ceratophyllum demersum HOM05D006382 ORTHO05D008938 7.6e-175 617.8 452 61.5
FAN03G1976 Fragaria x ananassa HOM05D006382 ORTHO05D008938 7.6e-175 617.8 478 61.5
BcaB02g07372 Brassica carinata HOM05D006382 ORTHO05D008938 9.9e-175 617.5 447 63.1
Psat3g105480 Pisum sativum HOM05D006382 ORTHO05D008938 1.7e-174 616.7 490 58.4
TPR.G35789 Trifolium pratense HOM05D006382 ORTHO05D008938 2.9e-174 615.9 449 62.1
Ca_07943_v3 Cicer arietinum L. HOM05D006382 ORTHO05D008938 6.4e-174 614.8 459 61.2
arahy.Tifrunner.gnm1.ann1.Z348XU Arachis hypogaea HOM05D006382 ORTHO05D008938 1.4e-173 613.6 454 62.1
AUR62004414 Chenopodium quinoa HOM05D006382 ORTHO05D008938 1.4e-173 613.6 450 62.2
arahy.Tifrunner.gnm1.ann1.FF5BCH Arachis hypogaea HOM05D006382 ORTHO05D008938 3.2e-173 612.5 454 62.1
Peaxi162Scf00020g01516 Petunia axillaris HOM05D006382 ORTHO05D008938 7.1e-173 611.3 449 62.6
Nitab4.5_0010695g0050 Nicotiana tabacum HOM05D006382 ORTHO05D008938 1.3e-171 607.1 472 60.6
Cc02_g38570 Coffea canephora HOM05D006382 ORTHO05D008938 1.7e-171 606.7 452 61.9
CANSAT56G1207 Cannabis sativa HOM05D006382 ORTHO05D008938 3.0e-171 605.9 476 59.2
FAN06G0271 Fragaria x ananassa HOM05D006382 ORTHO05D008938 3.0e-171 605.9 449 63.7
Lsat_1_v5_gn_4_35160 Lactuca sativa HOM05D006382 ORTHO05D008938 1.9e-170 603.2 480 59.2
Actinidia10076 Actinidia chinensis HOM05D006382 ORTHO05D008938 9.6e-170 600.9 432 63.9
Haze_15566 Corylus avellana HOM05D006382 ORTHO05D008938 9.0e-168 594.3 476 59.0
Aa31LG10G15440 Aethionema arabicum HOM05D006382 ORTHO05D008938 2.3e-163 579.7 409 64.8
CANSAT56G3955 Cannabis sativa HOM05D006382 ORTHO05D008938 1.3e-158 563.9 454 57.5
Ah.05g180140 Amaranthus hybridus HOM05D006382 ORTHO05D008938 3.3e-154 549.3 472 55.9
unitig_747.g21323 Utricularia gibba HOM05D000887 ORTHO05D000908 4.8e-153 545.4 460 58.0
AUR62022620 Chenopodium quinoa HOM05D006382 ORTHO05D008938 3.0e-147 526.2 482 53.1
COL.COLO4_12779 Corchorus olitorius HOM05D006382 ORTHO05D008938 6.5e-142 508.4 448 55.1
Migut.B01800 Erythranthe guttata HOM05D006382 ORTHO05D008938 1.8e-139 500.4 461 53.1
Gohir.D11G097200 Gossypium hirsutum HOM05D006382 ORTHO05D008938 1.1e-138 497.7 345 65.8
CAN.G78.131 Capsicum annuum HOM05D006382 ORTHO05D008938 3.7e-137 492.7 364 62.1
Manes.05G029200 Manihot esculenta HOM05D006382 ORTHO05D008938 3.7e-137 492.7 364 62.1
Cre03.g193700 Chlamydomonas reinhardtii HOM05D006382 ORTHO05D008938 3.2e-133 479.6 452 54.0
MCO14G065 Micromonas commoda HOM05D006382 ORTHO05D008938 1.5e-122 444.1 473 51.0
TAR629G1903 Trochodendron aralioides HOM05D006382 ORTHO05D008938 2.4e-112 410.2 286 67.1
Oeu063676.1 Olea europaea HOM05D006382 ORTHO05D008938 1.2e-111 407.9 466 47.9
PRCOL_00004635 Prasinoderma coloniale HOM05D006382 ORTHO05D008938 1.5e-106 391.0 504 44.8
Zm00001eb375690 Zea mays HOM05D006382 ORTHO05D008938 2.8e-100 370.2 291 63.2
Potri.014G090601 Populus trichocarpa HOM05D006382 ORTHO05D008938 1.2e-98 364.8 258 66.3
Cfa025852 Carpinus fangiana HOM05D006382 ORTHO05D008938 2.3e-83 313.9 456 39.9
SMO139G0016 Selaginella moellendorffii HOM05D006382 ORTHO05D376983 1.2e-50 205.3 227 49.8
SMO165G0168 Selaginella moellendorffii HOM05D006382 ORTHO05D374182 1.4e-32 145.2 277 35.7
Os06g0163600 Oryza sativa ssp. japonica HOM05D006382 ORTHO05D008938 4.6e-31 140.2 98 62.2
Hma1.2p1_0036F.1_g022810 Hydrangea macrophylla HOM05D006382 ORTHO05D228417 4.1e-27 127.1 95 61.1
Hma1.2p1_0036F.1_g022815 Hydrangea macrophylla HOM05D006382 ORTHO05D228242 4.1e-27 127.1 95 61.1
Hma1.2p1_0515F.1_g170355 Hydrangea macrophylla HOM05D006382 ORTHO05D228454 4.1e-27 127.1 95 61.1
Hma1.2p1_1019F.1_g248455 Hydrangea macrophylla HOM05D006382 ORTHO05D228422 4.1e-27 127.1 95 61.1
BolC4t24936H Brassica oleracea HOM05D006382 ORTHO05D024383 2.2e-20 104.8 88 56.8
C04p33670 Brassica napus HOM05D006382 ORTHO05D024383 3.6e-15 87.4 69 62.3
Ah.05g180150 Amaranthus hybridus HOM05D006382 ORTHO05D060446 6.5e-09 66.6 53 54.7
BcaB04g18088 Brassica carinata HOM05D006382 ORTHO05D024383 6.5e-09 66.6 43 76.7


User provided reference genes

Program Settings