Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c20_22530 Physcomitrium patens HOM05D006977 ORTHO05D008738 3.7e-103 378.3 197 100.0
Mapoly0147s0029 Marchantia polymorpha HOM05D006977 ORTHO05D008738 1.3e-26 124.0 192 41.7
PSO170G4516 Papaver somniferum HOM05D006977 ORTHO05D008738 2.1e-13 80.1 180 37.2
Sc02g0004000 Simmondsia chinensis HOM05D006977 ORTHO05D008738 3.6e-13 79.3 183 33.3
Os07g0636400 Oryza sativa ssp. japonica HOM05D006977 ORTHO05D008738 1.0e-12 77.8 156 35.3
Duzib133G0680 Durio zibethinus HOM05D006977 ORTHO05D008738 6.7e-12 75.1 136 39.7
Duzib268G1378 Durio zibethinus HOM05D006977 ORTHO05D008738 1.5e-11 73.9 166 34.3
HPP92_012764 Vanilla planifolia HOM05D006977 ORTHO05D008738 1.5e-11 73.9 135 39.3
MBI19_g30288_MAGBIO Magnolia biondii HOM05D006977 ORTHO05D008738 2.6e-11 73.2 183 30.6
PSO357G0421 Papaver somniferum HOM05D006977 ORTHO05D008738 2.6e-11 73.2 135 40.7
AUR62007556 Chenopodium quinoa HOM05D006977 ORTHO05D008738 4.4e-11 72.4 150 36.0
PGR042G1466 Punica granatum HOM05D006977 ORTHO05D008738 5.7e-11 72.0 183 36.6
Zm00001eb328690 Zea mays HOM05D006977 ORTHO05D008738 5.7e-11 72.0 184 32.6
AUR62020194 Chenopodium quinoa HOM05D006977 ORTHO05D008738 7.4e-11 71.6 148 35.1
FAN19G2776 Fragaria x ananassa HOM05D006977 ORTHO05D008738 9.7e-11 71.2 182 33.5
Manes.05G008900 Manihot esculenta HOM05D006977 ORTHO05D008738 9.7e-11 71.2 154 34.4
ATR0796G043 Amborella trichopoda HOM05D006977 ORTHO05D008738 1.3e-10 70.9 137 34.3
CsaV3_5G018620 Cucumis sativus L. HOM05D006977 ORTHO05D008738 1.3e-10 70.9 137 34.3
Psat7g015240 Pisum sativum HOM05D006977 ORTHO05D008738 1.3e-10 70.9 161 35.4
Sabra14G0082500 Salix brachista HOM05D006977 ORTHO05D008738 1.3e-10 70.9 164 34.8
ClCG01G007180 Citrullus lanatus HOM05D006977 ORTHO05D008738 1.7e-10 70.5 137 34.3
Lsat_1_v5_gn_7_107761 Lactuca sativa HOM05D006977 ORTHO05D008738 1.7e-10 70.5 135 35.6
Cc04_g01560 Coffea canephora HOM05D006977 ORTHO05D008738 2.8e-10 69.7 158 36.1
Thhalv10029024m.g Eutrema salsugineum HOM05D006977 ORTHO05D008738 2.8e-10 69.7 135 36.3
Gohir.D11G109500 Gossypium hirsutum HOM05D006977 ORTHO05D008738 2.8e-10 69.7 136 36.0
Gorai.007G117100 Gossypium raimondii HOM05D006977 ORTHO05D008738 2.8e-10 69.7 136 36.0
Medtr8g103265 Medicago truncatula HOM05D006977 ORTHO05D008738 2.8e-10 69.7 181 33.7
VMungo0720G2811 Vigna mungo HOM05D006977 ORTHO05D008738 2.8e-10 69.7 141 35.5
EL10Ac6g15579 Beta vulgaris HOM05D006977 ORTHO05D008738 3.7e-10 69.3 170 34.1
Duzib268G1823 Durio zibethinus HOM05D006977 ORTHO05D008738 3.7e-10 69.3 164 33.5
FAN26G0658 Fragaria x ananassa HOM05D006977 ORTHO05D008738 3.7e-10 69.3 183 33.3
GSVIVG01028248001 Vitis vinifera HOM05D006977 ORTHO05D008738 3.7e-10 69.3 150 36.7
MSTRG.6995 Avicennia marina HOM05D006977 ORTHO05D008738 4.8e-10 68.9 135 37.0
Hund02455 Selenicereus undatus HOM05D006977 ORTHO05D008738 4.8e-10 68.9 153 35.9
MELO3C005192.2 Cucumis melo HOM05D006977 ORTHO05D008738 6.3e-10 68.6 137 32.8
FAN23G2129 Fragaria x ananassa HOM05D006977 ORTHO05D008738 6.3e-10 68.6 181 31.5
QL05p057365 Quercus lobata HOM05D006977 ORTHO05D008738 6.3e-10 68.6 152 33.6
Duzib268G1723 Durio zibethinus HOM05D006977 ORTHO05D008738 8.2e-10 68.2 164 34.1
Gohir.A11G104700 Gossypium hirsutum HOM05D006977 ORTHO05D008738 8.2e-10 68.2 136 36.0
Phvul.L002843 Phaseolus vulgaris HOM05D006977 ORTHO05D008738 8.2e-10 68.2 156 35.9
TPR.G23504 Trifolium pratense HOM05D006977 ORTHO05D008738 8.2e-10 68.2 130 39.2
FvH4_1g26230 Fragaria vesca HOM05D006977 ORTHO05D008738 1.4e-09 67.4 134 36.6
HanXRQChr15g0493961 Helianthus annuus HOM05D006977 ORTHO05D008738 1.4e-09 67.4 135 34.8
Ca_17328_v3 Cicer arietinum L. HOM05D006977 ORTHO05D008738 1.8e-09 67.0 136 38.2
Lalb_Chr11g0071671 Lupinus albus HOM05D006977 ORTHO05D008738 1.8e-09 67.0 171 34.5
Rhsim01G0293500 Rhododendron simsii HOM05D006977 ORTHO05D008738 1.8e-09 67.0 137 35.0
RcHm_v2.0_Chr3g0485771 Rosa chinensis HOM05D006977 ORTHO05D008738 1.8e-09 67.0 142 34.5
Eucgr.A01003 Eucalyptus grandis HOM05D006977 ORTHO05D008738 2.4e-09 66.6 166 29.5
Potri.014G112200 Populus trichocarpa HOM05D006977 ORTHO05D008738 2.4e-09 66.6 146 36.3
Thecc.01G325400 Theobroma cacao HOM05D006977 ORTHO05D008738 2.4e-09 66.6 136 34.6
arahy.Tifrunner.gnm1.ann1.PT1J72 Arachis hypogaea HOM05D006977 ORTHO05D008738 3.1e-09 66.2 126 40.5
Aqoxy5G02822 Aquilegia oxysepala HOM05D006977 ORTHO05D008738 4.1e-09 65.9 151 35.8
Cfa004914 Carpinus fangiana HOM05D006977 ORTHO05D008738 4.1e-09 65.9 157 35.7
Carub.0006s3543 Capsella rubella HOM05D006977 ORTHO05D008738 5.3e-09 65.5 128 36.7
Haze_05149 Corylus avellana HOM05D006977 ORTHO05D008738 5.3e-09 65.5 156 35.3
Hma1.2p1_0484F.1_g162990 Hydrangea macrophylla HOM05D006977 ORTHO05D008738 5.3e-09 65.5 135 31.9
Sed0019401 Sechium edule HOM05D006977 ORTHO05D008738 5.3e-09 65.5 181 29.8
THA.LOC104799825 Tarenaya hassleriana HOM05D006977 ORTHO05D008738 5.3e-09 65.5 144 34.7
Atru.chr5.861 Acer truncatum HOM05D006977 ORTHO05D008738 7.0e-09 65.1 139 33.1
CSS0050251 Camellia sinensis var. sinensis HOM05D006977 ORTHO05D008738 7.0e-09 65.1 135 34.1
AL6G51510 Arabidopsis lyrata HOM05D006977 ORTHO05D008738 9.1e-09 64.7 135 34.1
DCAR_012297 Daucus carota HOM05D006977 ORTHO05D008738 9.1e-09 64.7 135 34.1
Nn4g24845 Nelumbo nucifera HOM05D006977 ORTHO05D008738 9.1e-09 64.7 155 32.9
unitig_8.g4039 Utricularia gibba HOM05D006977 ORTHO05D008738 9.1e-09 64.7 137 33.6
Glyma.04G053700 Glycine max HOM05D006977 ORTHO05D008738 1.2e-08 64.3 136 36.0
Glyma.10G137900 Glycine max HOM05D006977 ORTHO05D008738 1.2e-08 64.3 136 36.0
Lj5g0006261 Lotus japonicus HOM05D006977 ORTHO05D008738 1.2e-08 64.3 136 35.3
Dinv12080 Davidia involucrata HOM05D006977 ORTHO05D008738 1.6e-08 63.9 139 33.1
COL.COLO4_23128 Corchorus olitorius HOM05D006977 ORTHO05D008738 2.0e-08 63.5 135 34.8
Lj1A7G42 Lonicera japonica HOM05D006977 ORTHO05D008738 2.0e-08 63.5 123 37.4
arahy.Tifrunner.gnm1.ann1.KP3I1I Arachis hypogaea HOM05D006977 ORTHO05D008738 2.6e-08 63.2 121 39.7
CiPaw.08G082500 Carya illinoinensis HOM05D006977 ORTHO05D008738 2.6e-08 63.2 136 36.8
ECA236G2063 Erigeron canadensis HOM05D006977 ORTHO05D008738 3.5e-08 62.8 135 34.1
AT4G01790 Arabidopsis thaliana HOM05D006977 ORTHO05D008738 4.5e-08 62.4 135 34.8
Prupe.3G002600 Prunus persica HOM05D006977 ORTHO05D008738 4.5e-08 62.4 142 31.7
Oeu031543.1 Olea europaea HOM05D006977 ORTHO05D008738 5.9e-08 62.0 159 32.1
Actinidia25872 Actinidia chinensis HOM05D006977 ORTHO05D008738 7.7e-08 61.6 136 33.8
Ciclev10022352m.g Citrus clementina HOM05D006977 ORTHO05D008738 7.7e-08 61.6 145 33.1
TWI81G0461 Tripterygium wilfordii HOM05D006977 ORTHO05D008738 7.7e-08 61.6 135 36.3
CARHR249760 Cardamine hirsuta HOM05D006977 ORTHO05D008738 1.0e-07 61.2 135 35.6
PGSC0003DMG400001120 Solanum tuberosum HOM05D006977 ORTHO05D008738 1.0e-07 61.2 128 33.6
CAN.G100.60 Capsicum annuum HOM05D006977 ORTHO05D008738 1.3e-07 60.8 127 33.9
Nitab4.5_0003092g0050 Nicotiana tabacum HOM05D006977 ORTHO05D008738 1.3e-07 60.8 143 32.2
Sopen01g030650 Solanum pennellii HOM05D006977 ORTHO05D008738 1.3e-07 60.8 128 32.8
TAR362G0624 Trochodendron aralioides HOM05D006977 ORTHO05D008738 1.3e-07 60.8 181 32.0
Cpa.g.sc112.76 Carica papaya HOM05D006977 ORTHO05D008738 1.7e-07 60.5 135 31.9
Cpa.g.sc57.16 Carica papaya HOM05D006977 ORTHO05D008738 2.2e-07 60.1 136 32.4
FAN28G2841 Fragaria x ananassa HOM05D006977 ORTHO05D008738 2.2e-07 60.1 183 29.5
MD09G1290400 Malus domestica HOM05D006977 ORTHO05D008738 2.9e-07 59.7 181 29.3
A03p31490 Brassica napus HOM05D006977 ORTHO05D008738 3.8e-07 59.3 135 31.9
BraA03t12329Z Brassica rapa HOM05D006977 ORTHO05D008738 3.8e-07 59.3 135 31.9
Peaxi162Scf00309g00082 Petunia axillaris HOM05D006977 ORTHO05D008738 3.8e-07 59.3 134 34.3
SalBow5G4120 Salvia bowleyana HOM05D006977 ORTHO05D008738 5.0e-07 58.9 121 36.4
BcaB01g02378 Brassica carinata HOM05D006977 ORTHO05D008738 6.5e-07 58.5 135 30.4
Migut.M01655 Erythranthe guttata HOM05D006977 ORTHO05D008738 6.5e-07 58.5 151 33.8
Aa31LG5G1570 Aethionema arabicum HOM05D006977 ORTHO05D008738 8.5e-07 58.2 167 29.3
CDE02G1393 Ceratophyllum demersum HOM05D006977 ORTHO05D008738 8.5e-07 58.2 80 38.8
BcaC01g06803 Brassica carinata HOM05D006977 ORTHO05D008738 1.1e-06 57.8 135 31.1
BolC3t16121H Brassica oleracea HOM05D006977 ORTHO05D008738 1.1e-06 57.8 135 31.1
Solyc01g080830.3 Solanum lycopersicum HOM05D006977 ORTHO05D008738 1.5e-06 57.4 128 32.0
C03p38480 Brassica napus HOM05D006977 ORTHO05D008738 1.9e-06 57.0 135 30.4
vmacro15094 Vaccinium macrocarpon HOM05D006977 ORTHO05D008738 4.2e-06 55.8 136 33.1


User provided reference genes

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