Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c20_21160 Physcomitrium patens HOM05D005685 ORTHO05D007046 0.0e+00 1643.6 800 100.0
AagrBONN_evm.TU.Sc2ySwM_228.1006 Anthoceros agrestis HOM05D005685 ORTHO05D007046 1.5e-230 803.5 790 54.7
Mapoly0011s0171 Marchantia polymorpha HOM05D005685 ORTHO05D007046 2.0e-219 766.5 794 52.4
SMO351G0414 Selaginella moellendorffii HOM05D005685 ORTHO05D007046 1.8e-188 663.7 765 47.2
SEGI_25985 Sequoiadendron giganteum HOM05D005685 ORTHO05D007046 3.6e-181 639.4 650 51.8
ATR0665G442 Amborella trichopoda HOM05D005685 ORTHO05D007046 1.2e-168 597.8 768 44.8
TAR605G0002 Trochodendron aralioides HOM05D005685 ORTHO05D007046 1.8e-164 583.9 772 43.4
Dinv13349 Davidia involucrata HOM05D005685 ORTHO05D007046 1.9e-150 537.3 772 41.2
Nn1g00647 Nelumbo nucifera HOM05D005685 ORTHO05D007046 3.7e-149 533.1 768 41.0
PSO782G3742 Papaver somniferum HOM05D005685 ORTHO05D007046 5.5e-145 519.2 774 39.4
Hma1.2p1_0713F.1_g207810 Hydrangea macrophylla HOM05D005685 ORTHO05D007046 2.1e-144 517.3 773 40.1
Actinidia12613 Actinidia chinensis HOM05D005685 ORTHO05D007046 6.1e-144 515.8 774 38.8
CSS0007667 Camellia sinensis var. sinensis HOM05D005685 ORTHO05D007046 6.1e-144 515.8 764 39.9
PSO063G4015 Papaver somniferum HOM05D005685 ORTHO05D007046 6.1e-144 515.8 775 39.9
CsaV3_4G032730 Cucumis sativus L. HOM05D005685 ORTHO05D007046 1.1e-142 511.5 783 39.5
Prupe.4G154100 Prunus persica HOM05D005685 ORTHO05D007046 1.5e-142 511.1 772 39.4
DCAR_017584 Daucus carota HOM05D005685 ORTHO05D007046 1.4e-140 504.6 770 37.1
Lj1g0015970 Lotus japonicus HOM05D005685 ORTHO05D007046 1.8e-140 504.2 774 38.2
Phvul.011G173500 Phaseolus vulgaris HOM05D005685 ORTHO05D007046 4.1e-140 503.1 776 37.0
ClCG11G017070 Citrullus lanatus HOM05D005685 ORTHO05D007046 9.1e-140 501.9 779 38.6
Sc03g0010780 Simmondsia chinensis HOM05D005685 ORTHO05D007046 1.0e-138 498.4 761 37.8
VMungo1127G1789 Vigna mungo HOM05D005685 ORTHO05D007046 1.3e-138 498.0 777 37.1
CiPaw.11G154400 Carya illinoinensis HOM05D005685 ORTHO05D007046 2.2e-138 497.3 769 38.2
Haze_08449 Corylus avellana HOM05D005685 ORTHO05D007046 8.5e-138 495.4 766 38.1
Sed0016294 Sechium edule HOM05D005685 ORTHO05D007046 2.5e-137 493.8 770 37.9
Medtr8g461480 Medicago truncatula HOM05D005685 ORTHO05D007046 1.6e-136 491.1 778 38.2
Lalb_Chr19g0133681 Lupinus albus HOM05D005685 ORTHO05D007046 4.7e-136 489.6 778 37.5
Aqoxy4G01266 Aquilegia oxysepala HOM05D005685 ORTHO05D007046 7.9e-136 488.8 772 37.8
RhsimUnG0165000 Rhododendron simsii HOM05D005685 ORTHO05D007046 7.9e-136 488.8 725 38.8
Cpa.g.sc77.65 Carica papaya HOM05D005685 ORTHO05D007046 1.8e-135 487.6 749 38.9
GSVIVG01014072001 Vitis vinifera HOM05D005685 ORTHO05D007046 3.0e-135 486.9 771 37.6
Psat4g139160 Pisum sativum HOM05D005685 ORTHO05D007046 6.7e-135 485.7 767 37.7
MD11G1273300 Malus domestica HOM05D005685 ORTHO05D007046 1.5e-134 484.6 773 37.5
Potri.001G380900 Populus trichocarpa HOM05D005685 ORTHO05D007046 1.5e-134 484.6 772 37.0
Manes.03G084500 Manihot esculenta HOM05D005685 ORTHO05D007046 4.8e-133 479.6 745 37.4
Atru.chr2.1911 Acer truncatum HOM05D005685 ORTHO05D007046 1.1e-132 478.4 771 37.5
Ciclev10019120m.g Citrus clementina HOM05D005685 ORTHO05D007046 1.1e-132 478.4 770 36.6
TPR.G16474 Trifolium pratense HOM05D005685 ORTHO05D007046 1.8e-132 477.6 731 39.3
FvH4_3g17370 Fragaria vesca HOM05D005685 ORTHO05D007046 7.0e-132 475.7 770 36.8
MSTRG.14992 Avicennia marina HOM05D005685 ORTHO05D007046 1.2e-131 474.9 786 37.3
Sabra16G0251100 Salix brachista HOM05D005685 ORTHO05D007046 4.5e-131 473.0 787 37.1
PGR031G3876 Punica granatum HOM05D005685 ORTHO05D007046 6.5e-130 469.2 761 37.6
RhsimUnG0060100 Rhododendron simsii HOM05D005685 ORTHO05D007046 8.5e-130 468.8 725 37.9
Potri.011G102100 Populus trichocarpa HOM05D005685 ORTHO05D007046 1.1e-129 468.4 770 37.3
CANSAT56G0504 Cannabis sativa HOM05D005685 ORTHO05D007046 2.5e-129 467.2 772 36.4
Cc05_g10550 Coffea canephora HOM05D005685 ORTHO05D007046 3.2e-129 466.8 771 36.4
HanXRQChr10g0305611 Helianthus annuus HOM05D005685 ORTHO05D007046 9.4e-129 465.3 776 37.0
CAN.G375.61 Capsicum annuum HOM05D005685 ORTHO05D007046 1.2e-128 464.9 771 37.5
Lsat_1_v5_gn_5_126281 Lactuca sativa HOM05D005685 ORTHO05D007046 1.2e-128 464.9 770 36.9
Solyc07g062050.3 Solanum lycopersicum HOM05D005685 ORTHO05D007046 2.1e-128 464.2 773 36.9
Sopen07g030310 Solanum pennellii HOM05D005685 ORTHO05D007046 2.7e-128 463.8 771 36.6
Peaxi162Scf00111g01236 Petunia axillaris HOM05D005685 ORTHO05D007046 3.0e-127 460.3 734 38.3
Sabra11G0083400 Salix brachista HOM05D005685 ORTHO05D007046 3.0e-127 460.3 766 36.6
MELO3C016678.2 Cucumis melo HOM05D005685 ORTHO05D007046 5.2e-127 459.5 816 36.2
RhsimUnG0224400 Rhododendron simsii HOM05D005685 ORTHO05D007046 2.0e-126 457.6 793 35.7
Gohir.D11G302400 Gossypium hirsutum HOM05D005685 ORTHO05D007046 7.4e-126 455.7 773 36.4
THA.LOC104808083 Tarenaya hassleriana HOM05D005685 ORTHO05D007046 1.7e-125 454.5 774 36.7
Gorai.007G332400 Gossypium raimondii HOM05D005685 ORTHO05D007046 6.3e-125 452.6 773 36.4
SalBow8G2073 Salvia bowleyana HOM05D005685 ORTHO05D007046 6.3e-125 452.6 790 36.6
Gohir.A11G290000 Gossypium hirsutum HOM05D005685 ORTHO05D007046 1.1e-124 451.8 773 36.4
FAN25G1369 Fragaria x ananassa HOM05D005685 ORTHO05D007046 3.1e-124 450.3 756 36.0
CARHR017570 Cardamine hirsuta HOM05D005685 ORTHO05D007046 3.5e-123 446.8 774 37.9
Sp1g15160 Schrenkiella parvula HOM05D005685 ORTHO05D007046 5.9e-123 446.0 776 36.3
SGA_v2.0_scaffold73G24373 Striga asiatica HOM05D005685 ORTHO05D007046 5.9e-123 446.0 751 37.2
Thhalv10006979m.g Eutrema salsugineum HOM05D005685 ORTHO05D007046 2.2e-122 444.1 780 36.4
vmacro11986 Vaccinium macrocarpon HOM05D005685 ORTHO05D007046 1.5e-121 441.4 761 36.3
Thecc.07G137700 Theobroma cacao HOM05D005685 ORTHO05D007046 3.2e-121 440.3 695 37.1
Migut.M00685 Erythranthe guttata HOM05D005685 ORTHO05D007046 1.6e-120 438.0 774 35.5
Zm00001eb004590 Zea mays HOM05D005685 ORTHO05D007046 1.0e-119 435.3 772 36.0
C05p15360 Brassica napus HOM05D005685 ORTHO05D007046 5.2e-119 433.0 776 35.8
A06p12940 Brassica napus HOM05D005685 ORTHO05D007046 6.8e-119 432.6 779 35.7
AL7G51000 Arabidopsis lyrata HOM05D005685 ORTHO05D007046 8.8e-119 432.2 776 36.7
BraA06t24453Z Brassica rapa HOM05D005685 ORTHO05D007046 2.6e-118 430.6 779 35.9
Carub.0001s1676 Capsella rubella HOM05D005685 ORTHO05D007046 4.4e-118 429.9 774 35.7
FAN16G1001 Fragaria x ananassa HOM05D005685 ORTHO05D007046 5.7e-118 429.5 756 34.7
FAN21G3337 Fragaria x ananassa HOM05D005685 ORTHO05D007046 7.5e-118 429.1 782 34.5
EL10Ac4g08448 Beta vulgaris HOM05D005685 ORTHO05D007046 2.2e-117 427.6 769 34.7
Ah.03g134490 Amaranthus hybridus HOM05D005685 ORTHO05D007046 4.8e-117 426.4 757 34.6
Lj1C822G13 Lonicera japonica HOM05D005685 ORTHO05D007046 3.1e-116 423.7 741 37.4
Sp5g33630 Schrenkiella parvula HOM05D005685 ORTHO05D007046 3.1e-116 423.7 774 35.5
BolC5t30242H Brassica oleracea HOM05D005685 ORTHO05D007046 4.5e-115 419.9 803 34.7
Ca_12745_v3 Cicer arietinum L. HOM05D005685 ORTHO05D007046 1.7e-114 417.9 591 40.6
ECA234G1223 Erigeron canadensis HOM05D005685 ORTHO05D007046 1.9e-113 414.5 723 35.7
Cfa019501 Carpinus fangiana HOM05D005685 ORTHO05D007046 7.2e-113 412.5 611 39.6
AUR62019678 Chenopodium quinoa HOM05D005685 ORTHO05D007046 2.1e-112 411.0 770 33.9
Thhalv10018251m.g Eutrema salsugineum HOM05D005685 ORTHO05D007046 2.1e-112 411.0 765 35.0
PGSC0003DMG400007083 Solanum tuberosum HOM05D005685 ORTHO05D007046 2.1e-112 411.0 818 32.8
CARHR072030 Cardamine hirsuta HOM05D005685 ORTHO05D007046 1.4e-111 408.3 773 35.2
AUR62013935 Chenopodium quinoa HOM05D005685 ORTHO05D007046 2.0e-110 404.4 723 33.6
AT1G78540 Arabidopsis thaliana HOM05D005685 ORTHO05D007046 2.6e-110 404.1 774 34.6
COL.COLO4_17454 Corchorus olitorius HOM05D005685 ORTHO05D007046 1.3e-109 401.7 776 34.8
Aa31LG7G1870 Aethionema arabicum HOM05D005685 ORTHO05D007046 3.1e-108 397.1 783 34.1
Carub.0002s2539 Capsella rubella HOM05D005685 ORTHO05D007046 4.5e-107 393.3 775 34.6
AL2G38940 Arabidopsis lyrata HOM05D005685 ORTHO05D007046 2.5e-105 387.5 720 35.1
AT1G17040 Arabidopsis thaliana HOM05D005685 ORTHO05D007046 2.8e-104 384.0 738 34.0
Duzib213G0171 Durio zibethinus HOM05D005685 ORTHO05D007046 8.0e-104 382.5 781 31.9
Aa31LG4G2430 Aethionema arabicum HOM05D005685 ORTHO05D007046 1.2e-102 378.6 739 32.9
BcaC05g25679 Brassica carinata HOM05D005685 ORTHO05D007046 1.0e-98 365.5 617 36.8
Nitab4.5_0001140g0120 Nicotiana tabacum HOM05D005685 ORTHO05D007046 2.3e-98 364.4 823 31.8
unitig_747.g21593 Utricularia gibba HOM05D005685 ORTHO05D007046 2.3e-98 364.4 778 32.8
AL1G29220 Arabidopsis lyrata HOM05D005685 ORTHO05D007046 2.9e-98 364.0 672 35.4
HPP92_014870 Vanilla planifolia HOM05D005685 ORTHO05D007046 3.3e-89 334.0 695 33.2
BcaB02g06680 Brassica carinata HOM05D005685 ORTHO05D007046 4.7e-88 330.1 591 35.2
CSS0011531 Camellia sinensis var. sinensis HOM05D005685 ORTHO05D007046 4.6e-83 313.5 357 49.0
CDE04G2909 Ceratophyllum demersum HOM05D005685 ORTHO05D007046 1.0e-82 312.4 324 51.2
Glyma.15G211900 Glycine max HOM05D005685 ORTHO05D007046 3.3e-81 307.4 570 34.9
arahy.Tifrunner.gnm1.ann1.TIF1LK Arachis hypogaea HOM05D005685 ORTHO05D007046 2.0e-78 298.1 569 34.3
arahy.Tifrunner.gnm1.ann1.4M0U4E Arachis hypogaea HOM05D005685 ORTHO05D007046 9.9e-78 295.8 582 33.8
FAN11G3672 Fragaria x ananassa HOM05D005685 ORTHO05D007046 1.5e-70 271.9 338 44.4
RhsimUnG0062900 Rhododendron simsii HOM05D005685 ORTHO05D007046 1.1e-65 255.8 530 33.0
DCAR_013783 Daucus carota HOM05D005685 ORTHO05D007046 4.4e-62 243.8 251 46.6
RcHm_v2.0_Chr5g0028891 Rosa chinensis HOM05D005685 ORTHO05D007046 5.8e-62 243.4 260 45.4
BraA06t26874Z Brassica rapa HOM05D005685 ORTHO05D007046 8.7e-58 229.6 264 43.2
TWI38G0887 Tripterygium wilfordii HOM05D005685 ORTHO05D007046 4.3e-57 227.3 258 41.9
Nitab4.5_0003618g0060 Nicotiana tabacum HOM05D005685 ORTHO05D007046 3.1e-55 221.1 871 24.5
Eucgr.F03221 Eucalyptus grandis HOM05D005685 ORTHO05D007046 1.5e-54 218.8 423 31.9
Os10g0567300 Oryza sativa ssp. japonica HOM05D005685 ORTHO05D007046 1.5e-54 218.8 266 41.4
Eucgr.F03222 Eucalyptus grandis HOM05D005685 ORTHO05D007046 1.4e-52 212.2 308 41.2
Glyma.15G212100 Glycine max HOM05D005685 ORTHO05D007046 1.3e-50 205.7 202 46.5
SEGI_34067 Sequoiadendron giganteum HOM05D005685 ORTHO05D007046 6.9e-47 193.4 156 64.7
MBI19_g17443_MAGBIO Magnolia biondii HOM05D005685 ORTHO05D007046 5.1e-42 177.2 107 77.6
CDE04G0489 Ceratophyllum demersum HOM05D005685 ORTHO05D007046 2.2e-37 161.8 150 48.7
CSS0047371 Camellia sinensis var. sinensis HOM05D005685 ORTHO05D007046 3.4e-30 137.9 115 51.3
SMO145G0004 Selaginella moellendorffii HOM05D005685 ORTHO05D007046 1.4e-28 132.5 173 49.7
Pp3c7_2410 Physcomitrium patens HOM05D005685 ORTHO05D007046 4.6e-27 127.5 138 51.4
Mapoly0028s0082 Marchantia polymorpha HOM05D005685 ORTHO05D007046 1.0e-26 126.3 197 40.6
CBR_g19551 Chara braunii HOM05D005685 ORTHO05D007046 5.7e-25 120.6 133 51.9
Zm00001eb210210 Zea mays HOM05D005685 ORTHO05D007046 1.7e-21 109.0 162 40.1
SEGI_05558 Sequoiadendron giganteum HOM05D005685 ORTHO05D007046 5.0e-21 107.5 130 38.5
CBR_g28498 Chara braunii HOM05D005685 ORTHO05D007046 5.5e-20 104.0 82 65.9
MBI19_g17438_MAGBIO Magnolia biondii HOM05D005685 ORTHO05D007046 1.2e-11 76.3 58 63.8


User provided reference genes

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