Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c20_20284 Physcomitrium patens HOM05D002034 ORTHO05D004251 0.0e+00 1644.0 828 100.0
Pp3c20_20280 Physcomitrium patens HOM05D002034 ORTHO05D004251 0.0e+00 1471.4 741 100.0
Mapoly0006s0080 Marchantia polymorpha HOM05D002034 ORTHO05D004251 5.0e-125 453.0 820 36.5
AagrBONN_evm.TU.Sc2ySwM_228.2653 Anthoceros agrestis HOM05D002034 ORTHO05D004251 1.9e-124 451.1 815 37.5
Pp3c22_21020 Physcomitrium patens HOM05D002034 ORTHO05D004251 9.8e-121 438.7 743 38.8
Nn2g10970 Nelumbo nucifera HOM05D002034 ORTHO05D004251 1.1e-119 435.3 764 37.2
Os03g0295700 Oryza sativa ssp. japonica HOM05D002034 ORTHO05D004251 6.5e-117 426.0 739 37.1
TAR369G0522 Trochodendron aralioides HOM05D002034 ORTHO05D004251 6.5e-117 426.0 794 35.9
ATR0174G009 Amborella trichopoda HOM05D002034 ORTHO05D004251 1.1e-116 425.2 775 37.0
SEGI_06649 Sequoiadendron giganteum HOM05D002034 ORTHO05D004251 3.6e-115 420.2 494 46.2
Lj6g0001278 Lotus japonicus HOM05D002034 ORTHO05D004251 1.2e-113 415.2 752 36.7
SMO141G0130 Selaginella moellendorffii HOM05D002034 ORTHO05D004251 1.5e-113 414.8 740 37.4
Eucgr.B02225 Eucalyptus grandis HOM05D002034 ORTHO05D004251 5.7e-113 412.9 747 36.4
Aqoxy2G00822 Aquilegia oxysepala HOM05D002034 ORTHO05D004251 8.3e-112 409.1 744 37.1
CsaV3_1G036460 Cucumis sativus L. HOM05D002034 ORTHO05D004251 3.5e-110 403.7 788 34.4
Zm00001eb396860 Zea mays HOM05D002034 ORTHO05D004251 1.3e-109 401.7 737 36.0
Carub.0008s1910 Capsella rubella HOM05D002034 ORTHO05D004251 1.7e-109 401.4 792 34.5
THA.LOC104799388 Tarenaya hassleriana HOM05D002034 ORTHO05D004251 1.7e-109 401.4 778 34.6
EL10Ac7g15893 Beta vulgaris HOM05D002034 ORTHO05D004251 2.3e-109 401.0 750 36.8
Medtr3g465600 Medicago truncatula HOM05D002034 ORTHO05D004251 6.6e-109 399.4 738 36.6
TPR.G32915 Trifolium pratense HOM05D002034 ORTHO05D004251 6.6e-109 399.4 756 36.1
Psat5g155480 Pisum sativum HOM05D002034 ORTHO05D004251 1.1e-108 398.7 780 35.3
Lalb_Chr04g0252081 Lupinus albus HOM05D002034 ORTHO05D004251 1.5e-108 398.3 783 35.5
Phvul.006G072400 Phaseolus vulgaris HOM05D002034 ORTHO05D004251 2.5e-108 397.5 766 36.3
QL01p039781 Quercus lobata HOM05D002034 ORTHO05D004251 3.3e-108 397.1 796 34.8
CSS0000627 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D004251 4.2e-108 396.7 743 36.1
CANSAT54G3012 Cannabis sativa HOM05D002034 ORTHO05D004251 4.2e-108 396.7 765 35.8
Prupe.6G051700 Prunus persica HOM05D002034 ORTHO05D004251 4.2e-108 396.7 786 35.5
PGR102G2830 Punica granatum HOM05D002034 ORTHO05D004251 5.5e-108 396.4 775 34.7
Actinidia23213 Actinidia chinensis HOM05D002034 ORTHO05D004251 7.2e-108 396.0 729 36.8
Gohir.A13G234000 Gossypium hirsutum HOM05D002034 ORTHO05D004251 1.2e-107 395.2 739 35.6
Hma1.2p1_0841F.1_g226850 Hydrangea macrophylla HOM05D002034 ORTHO05D004251 1.2e-107 395.2 745 36.0
Potri.009G076000 Populus trichocarpa HOM05D002034 ORTHO05D004251 1.2e-107 395.2 770 35.1
GSVIVG01024678001 Vitis vinifera HOM05D002034 ORTHO05D004251 1.6e-107 394.8 764 35.9
Sc12g0000270 Simmondsia chinensis HOM05D002034 ORTHO05D004251 2.1e-107 394.4 750 36.5
Solyc06g082200.4 Solanum lycopersicum HOM05D002034 ORTHO05D004251 2.1e-107 394.4 739 35.6
Ciclev10027766m.g Citrus clementina HOM05D002034 ORTHO05D004251 4.7e-107 393.3 753 36.1
PSO801G0069 Papaver somniferum HOM05D002034 ORTHO05D004251 6.1e-107 392.9 754 35.9
Gorai.013G270500 Gossypium raimondii HOM05D002034 ORTHO05D004251 8.0e-107 392.5 741 35.8
arahy.Tifrunner.gnm1.ann1.RZ6BDN Arachis hypogaea HOM05D002034 ORTHO05D004251 1.0e-106 392.1 750 36.7
Glyma.11G165900 Glycine max HOM05D002034 ORTHO05D004251 1.0e-106 392.1 749 36.8
Gohir.D13G239600 Gossypium hirsutum HOM05D002034 ORTHO05D004251 1.0e-106 392.1 740 35.8
BraA10t43651Z Brassica rapa HOM05D002034 ORTHO05D004251 1.4e-106 391.7 783 34.4
Cc01_g14670 Coffea canephora HOM05D002034 ORTHO05D004251 1.8e-106 391.3 739 35.5
Duzib150G0116 Durio zibethinus HOM05D002034 ORTHO05D004251 1.8e-106 391.3 775 35.6
Sed0002046 Sechium edule HOM05D002034 ORTHO05D004251 1.8e-106 391.3 780 33.6
FAN16G1479 Fragaria x ananassa HOM05D002034 ORTHO05D004251 2.3e-106 391.0 789 34.6
CDE08G0674 Ceratophyllum demersum HOM05D002034 ORTHO05D004251 3.0e-106 390.6 746 36.7
PSO339G3538 Papaver somniferum HOM05D002034 ORTHO05D004251 5.2e-106 389.8 736 36.7
RcHm_v2.0_Chr5g0070931 Rosa chinensis HOM05D002034 ORTHO05D004251 5.2e-106 389.8 753 35.9
Glyma.18G058700 Glycine max HOM05D002034 ORTHO05D004251 1.5e-105 388.3 748 36.1
AL8G34750 Arabidopsis lyrata HOM05D002034 ORTHO05D004251 2.0e-105 387.9 747 34.8
arahy.Tifrunner.gnm1.ann1.WA30K5 Arachis hypogaea HOM05D002034 ORTHO05D004251 2.0e-105 387.9 752 36.8
Sopen06g033580 Solanum pennellii HOM05D002034 ORTHO05D004251 2.0e-105 387.9 752 35.4
Aa31LG11G290 Aethionema arabicum HOM05D002034 ORTHO05D004251 2.6e-105 387.5 771 34.2
CiPaw.13G072000 Carya illinoinensis HOM05D002034 ORTHO05D004251 4.4e-105 386.7 492 43.3
arahy.Tifrunner.gnm1.ann1.H18R60 Arachis hypogaea HOM05D002034 ORTHO05D004251 7.5e-105 386.0 742 36.0
Rhsim13G0065900 Rhododendron simsii HOM05D002034 ORTHO05D004251 9.8e-105 385.6 745 35.4
MSTRG.8115 Avicennia marina HOM05D002034 ORTHO05D004251 1.3e-104 385.2 748 35.7
FAN11G3897 Fragaria x ananassa HOM05D002034 ORTHO05D004251 1.7e-104 384.8 770 35.2
Lsat_1_v5_gn_9_18521 Lactuca sativa HOM05D002034 ORTHO05D004251 2.2e-104 384.4 713 36.0
Manes.02G215950 Manihot esculenta HOM05D002034 ORTHO05D004251 2.9e-104 384.0 761 35.2
Dinv28678 Davidia involucrata HOM05D002034 ORTHO05D004251 3.7e-104 383.6 792 34.6
FvH4_3g39400 Fragaria vesca HOM05D002034 ORTHO05D004251 3.7e-104 383.6 770 35.1
TWI31G1212 Tripterygium wilfordii HOM05D002034 ORTHO05D004251 4.9e-104 383.3 789 34.3
BolC9t57903H Brassica oleracea HOM05D002034 ORTHO05D004251 8.3e-104 382.5 769 33.9
AT5G58510 Arabidopsis thaliana HOM05D002034 ORTHO05D004251 1.1e-103 382.1 784 33.7
MD11G1065500 Malus domestica HOM05D002034 ORTHO05D004251 1.1e-103 382.1 793 34.0
MELO3C020522.2 Cucumis melo HOM05D002034 ORTHO05D004251 1.8e-103 381.3 863 32.6
Thecc.09G354800 Theobroma cacao HOM05D002034 ORTHO05D004251 1.8e-103 381.3 750 34.9
Atru.chr3.4154 Acer truncatum HOM05D002034 ORTHO05D004251 4.1e-103 380.2 773 35.2
C09p50470 Brassica napus HOM05D002034 ORTHO05D004251 4.1e-103 380.2 755 34.2
Thhalv10012586m.g Eutrema salsugineum HOM05D002034 ORTHO05D004251 7.0e-103 379.4 744 33.9
BolC3t13874H Brassica oleracea HOM05D002034 ORTHO05D004251 1.6e-102 378.3 784 32.5
ClCG03G000460 Citrullus lanatus HOM05D002034 ORTHO05D004251 2.0e-102 377.9 825 32.2
FAN25G3060 Fragaria x ananassa HOM05D002034 ORTHO05D004251 2.7e-102 377.5 749 35.2
CSS0027541 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D004251 3.5e-102 377.1 465 44.3
HanXRQChr08g0229181 Helianthus annuus HOM05D002034 ORTHO05D004251 3.5e-102 377.1 751 34.2
DCAR_018219 Daucus carota HOM05D002034 ORTHO05D004251 4.6e-102 376.7 729 35.8
A03p12200 Brassica napus HOM05D002034 ORTHO05D004251 1.7e-101 374.8 780 32.9
Gorai.003G148700 Gossypium raimondii HOM05D002034 ORTHO05D004251 1.7e-101 374.8 770 34.8
Nitab4.5_0004155g0040 Nicotiana tabacum HOM05D002034 ORTHO05D004251 1.7e-101 374.8 739 35.5
Sp6g20200 Schrenkiella parvula HOM05D002034 ORTHO05D004251 2.9e-101 374.0 760 33.6
Cpa.g.sc2.386 Carica papaya HOM05D002034 ORTHO05D004251 6.6e-101 372.9 485 42.5
COL.COLO4_11121 Corchorus olitorius HOM05D002034 ORTHO05D004251 8.6e-101 372.5 740 34.3
Peaxi162Scf00808g00111 Petunia axillaris HOM05D002034 ORTHO05D004251 1.1e-100 372.1 471 44.4
BraA03t10531Z Brassica rapa HOM05D002034 ORTHO05D004251 1.5e-100 371.7 767 33.0
Nitab4.5_0006148g0070 Nicotiana tabacum HOM05D002034 ORTHO05D004251 2.5e-100 370.9 739 35.2
arahy.Tifrunner.gnm1.ann1.Z7E5WK Arachis hypogaea HOM05D002034 ORTHO05D004251 3.3e-100 370.5 767 34.7
TAR357G0005 Trochodendron aralioides HOM05D002034 ORTHO05D004251 4.3e-100 370.2 706 36.5
Gohir.D03G141700 Gossypium hirsutum HOM05D002034 ORTHO05D004251 5.6e-100 369.8 793 32.9
CAN.G1095.17 Capsicum annuum HOM05D002034 ORTHO05D004251 7.3e-100 369.4 752 35.0
A10p15750 Brassica napus HOM05D002034 ORTHO05D004251 1.2e-99 368.6 779 33.0
Peaxi162Scf00390g00823 Petunia axillaris HOM05D002034 ORTHO05D004251 6.1e-99 366.3 765 34.4
Duzib168G1938 Durio zibethinus HOM05D002034 ORTHO05D004251 8.0e-99 365.9 751 34.6
ECA247G1661 Erigeron canadensis HOM05D002034 ORTHO05D004251 2.3e-98 364.4 754 34.9
Cfa011748 Carpinus fangiana HOM05D002034 ORTHO05D004251 1.4e-95 355.1 479 40.3
Ca_14990_v3 Cicer arietinum L. HOM05D002034 ORTHO05D004251 3.2e-95 354.0 763 34.7
Ca_30101_v3 Cicer arietinum L. HOM05D002034 ORTHO05D004251 3.2e-95 354.0 763 34.7
AUR62009695 Chenopodium quinoa HOM05D002034 ORTHO05D004251 8.6e-93 345.9 804 32.7
BcaB08g36187 Brassica carinata HOM05D002034 ORTHO05D004251 1.1e-92 345.5 741 32.3
HPP92_012023 Vanilla planifolia HOM05D002034 ORTHO05D004251 1.2e-91 342.0 443 43.3
Haze_24388 Corylus avellana HOM05D002034 ORTHO05D004251 1.1e-90 339.0 771 32.6
VMungo0540G1016 Vigna mungo HOM05D002034 ORTHO05D004251 6.8e-90 336.3 665 36.2
Migut.F01663 Erythranthe guttata HOM05D002034 ORTHO05D004251 2.1e-86 324.7 766 32.4
AUR62036251 Chenopodium quinoa HOM05D002034 ORTHO05D004251 6.6e-85 319.7 460 41.5
unitig_736.g22533 Utricularia gibba HOM05D002034 ORTHO05D004251 4.3e-84 317.0 798 31.8
CARHR272340 Cardamine hirsuta HOM05D002034 ORTHO05D004251 8.1e-83 312.8 388 44.1
BcaB01g04520 Brassica carinata HOM05D002034 ORTHO05D004251 1.2e-81 308.9 687 32.6
MSTRG.9115 Avicennia marina HOM05D002034 ORTHO05D004251 4.1e-79 300.4 607 36.4
Sabra09G0057900 Salix brachista HOM05D002034 ORTHO05D004251 4.6e-78 297.0 891 29.6
Gohir.A03G026800 Gossypium hirsutum HOM05D002034 ORTHO05D004251 3.3e-76 290.8 771 30.1
vmacro02935 Vaccinium macrocarpon HOM05D002034 ORTHO05D004251 5.8e-73 280.0 380 41.6
Nitab4.5_0001115g0080 Nicotiana tabacum HOM05D002034 ORTHO05D004251 3.8e-72 277.3 431 38.3
Ah.15g096260 Amaranthus hybridus HOM05D002034 ORTHO05D004251 1.9e-71 275.0 378 42.9
AUR62036252 Chenopodium quinoa HOM05D002034 ORTHO05D004251 2.4e-66 258.1 447 37.4
CBR_g32390 Chara braunii HOM05D002034 ORTHO05D004251 4.9e-64 250.4 568 31.3
Hund18961 Selenicereus undatus HOM05D002034 ORTHO05D004251 6.4e-64 250.0 514 33.5
SGA_v2.0_scaffold62G21324 Striga asiatica HOM05D002034 ORTHO05D004251 6.4e-56 223.4 514 34.0
Lalb_Chr15g0083131 Lupinus albus HOM05D002034 ORTHO05D004251 2.7e-54 218.0 559 29.9
Oeu023980.1 Olea europaea HOM05D002034 ORTHO05D004251 2.4e-50 204.9 345 38.6
Pp3c17_9080 Physcomitrium patens HOM05D002034 ORTHO05D004251 5.0e-40 170.6 415 30.4
Lalb_Chr15g0083121 Lupinus albus HOM05D002034 ORTHO05D004251 1.1e-39 169.5 192 49.5
HPP92_012001 Vanilla planifolia HOM05D002034 ORTHO05D004251 2.2e-35 155.2 214 39.7
PGSC0003DMG400030372 Solanum tuberosum HOM05D002034 ORTHO05D004251 1.4e-29 136.0 409 29.8
Lj1A128G36 Lonicera japonica HOM05D002034 ORTHO05D004251 8.8e-29 133.3 206 40.8
CSS0020954 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D004251 2.0e-28 132.1 148 45.9
Ah.15g096250 Amaranthus hybridus HOM05D002034 ORTHO05D004251 6.3e-27 127.1 339 30.7
C03p14280 Brassica napus HOM05D002034 ORTHO05D004251 1.0e-24 119.8 172 40.1
vmacro02934 Vaccinium macrocarpon HOM05D002034 ORTHO05D004251 3.8e-24 117.9 353 30.9
SHI19193 Sapria himalayana HOM05D002034 ORTHO05D004251 1.8e-18 99.0 384 26.6
SEGI_39431 Sequoiadendron giganteum HOM05D002034 ORTHO05D004251 4.1e-18 97.8 98 46.9
Lsat_1_v5_gn_6_89500 Lactuca sativa HOM05D002034 ORTHO05D004251 5.9e-17 94.0 189 34.9
Nitab4.5_0001469g0010 Nicotiana tabacum HOM05D002034 ORTHO05D004251 8.5e-16 90.1 119 40.3
MCO07G130 Micromonas commoda HOM05D002034 ORTHO05D004251 2.7e-14 85.1 93 46.2
VMungo0647G1991 Vigna mungo HOM05D002034 ORTHO05D004251 1.4e-13 82.8 109 37.6
AagrBONN_evm.TU.Sc2ySwM_368.1890 Anthoceros agrestis HOM05D002034 ORTHO05D004251 6.7e-13 80.5 53 66.0
HPP92_012000 Vanilla planifolia HOM05D002034 ORTHO05D004251 3.5e-09 68.2 78 51.3
VMungo0647G0969 Vigna mungo HOM05D002034 ORTHO05D004251 3.5e-09 68.2 101 37.6
Pp3c20_12230 Physcomitrium patens HOM05D001434 ORTHO05D004586 7.7e-09 67.0 79 38.0
TWI38G0863 Tripterygium wilfordii HOM05D001434 ORTHO05D004586 5.0e-08 64.3 124 28.2
HPP92_012415 Vanilla planifolia HOM05D001434 ORTHO05D004586 6.5e-08 63.9 109 30.3
BcaB01g04519 Brassica carinata HOM05D002034 ORTHO05D004251 1.5e-07 62.8 70 41.4
ECA246G3933 Erigeron canadensis HOM05D001434 ORTHO05D004586 1.5e-07 62.8 86 36.0
Lsat_1_v5_gn_5_2940 Lactuca sativa HOM05D001434 ORTHO05D004586 1.5e-07 62.8 86 34.9
THA.LOC104811616 Tarenaya hassleriana HOM05D001434 ORTHO05D004586 1.5e-07 62.8 215 26.0
SMO358G0516 Selaginella moellendorffii HOM05D001434 ORTHO05D004586 1.9e-07 62.4 105 31.4
CANSAT11G2014 Cannabis sativa HOM05D001434 ORTHO05D004586 2.5e-07 62.0 104 32.7
SEGI_18638 Sequoiadendron giganteum HOM05D002034 ORTHO05D004251 2.5e-07 62.0 89 38.2
THA.LOC104817673 Tarenaya hassleriana HOM05D001434 ORTHO05D004586 2.5e-07 62.0 67 38.8
TWI39G0476 Tripterygium wilfordii HOM05D001434 ORTHO05D004586 2.5e-07 62.0 95 29.5
TAR624G0691 Trochodendron aralioides HOM05D001434 ORTHO05D004586 2.5e-07 62.0 110 30.9
VMungo0540G0244 Vigna mungo HOM05D001434 ORTHO05D004586 2.5e-07 62.0 170 26.5
A03p14290 Brassica napus HOM05D001434 ORTHO05D004586 3.2e-07 61.6 86 33.7
BraA03t10726Z Brassica rapa HOM05D001434 ORTHO05D004586 3.2e-07 61.6 86 33.7
HanXRQChr11g0336391 Helianthus annuus HOM05D001434 ORTHO05D004586 3.2e-07 61.6 96 32.3
C03p16670 Brassica napus HOM05D001434 ORTHO05D004586 4.2e-07 61.2 177 23.7
Glyma.14G022300 Glycine max HOM05D001434 ORTHO05D004586 4.2e-07 61.2 187 25.7
Lalb_Chr04g0248331 Lupinus albus HOM05D001434 ORTHO05D004586 4.2e-07 61.2 80 36.2
AT5G55060 Arabidopsis thaliana HOM05D001434 ORTHO05D004586 5.5e-07 60.8 98 32.7
Gohir.A01G081200 Gossypium hirsutum HOM05D001434 ORTHO05D004586 5.5e-07 60.8 104 31.7
Carub.0008s1533 Capsella rubella HOM05D001434 ORTHO05D004586 7.2e-07 60.5 98 33.7
Duzib213G0248 Durio zibethinus HOM05D001434 ORTHO05D004586 7.2e-07 60.5 88 34.1
FAN11G3048 Fragaria x ananassa HOM05D001434 ORTHO05D004586 7.2e-07 60.5 150 24.7
Gohir.D01G068300 Gossypium hirsutum HOM05D001434 ORTHO05D004586 7.2e-07 60.5 104 31.7
PGR031G3770 Punica granatum HOM05D001434 ORTHO05D004586 7.2e-07 60.5 102 31.4
Thecc.07G033300 Theobroma cacao HOM05D001434 ORTHO05D004586 7.2e-07 60.5 105 30.5
BcaC03g14270 Brassica carinata HOM05D001434 ORTHO05D004586 1.2e-06 59.7 98 32.7
C02p16470 Brassica napus HOM05D001434 ORTHO05D004586 1.2e-06 59.7 98 32.7
BolC2t07748H Brassica oleracea HOM05D001434 ORTHO05D004586 1.2e-06 59.7 98 32.7
CARHR268410 Cardamine hirsuta HOM05D001434 ORTHO05D004586 1.6e-06 59.3 66 39.4
CANSAT11G2500 Cannabis sativa HOM05D001434 ORTHO05D004586 2.1e-06 58.9 196 24.5
ECA236G1274 Erigeron canadensis HOM05D001434 ORTHO05D004586 2.1e-06 58.9 91 31.9
LjContig00272g0017225 Lotus japonicus HOM05D001434 ORTHO05D004586 2.1e-06 58.9 192 25.5
CiPaw.13G071900 Carya illinoinensis HOM05D002034 ORTHO05D004251 2.7e-06 58.5 87 37.9
Dinv22250 Davidia involucrata HOM05D001434 ORTHO05D004586 2.7e-06 58.5 220 25.0
ATR0794G053 Amborella trichopoda HOM05D001434 ORTHO05D004586 3.6e-06 58.2 80 33.8
CSS0015957 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D004251 3.6e-06 58.2 100 36.0
Nn1g03482 Nelumbo nucifera HOM05D001434 ORTHO05D004586 3.6e-06 58.2 334 24.3
Aqoxy1G03123 Aquilegia oxysepala HOM05D001434 ORTHO05D004586 4.7e-06 57.8 348 21.8
Gorai.002G090300 Gossypium raimondii HOM05D001434 ORTHO05D004586 4.7e-06 57.8 104 30.8
Lj1A875G28 Lonicera japonica HOM05D001434 ORTHO05D004586 4.7e-06 57.8 435 22.8
Aa31LG3G10990 Aethionema arabicum HOM05D001434 ORTHO05D004586 6.1e-06 57.4 65 36.9
CDE05G0747 Ceratophyllum demersum HOM05D001434 ORTHO05D004586 6.1e-06 57.4 79 35.4
Eucgr.F00743 Eucalyptus grandis HOM05D001434 ORTHO05D004586 6.1e-06 57.4 154 25.3
Sp6g17000 Schrenkiella parvula HOM05D001434 ORTHO05D004586 6.1e-06 57.4 214 25.7


User provided reference genes

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