Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c20_19960 Physcomitrium patens HOM05D007587 ORTHO05D009657 1.1e-35 152.5 68 100.0
Pp3c24_89 Physcomitrium patens HOM05D007587 ORTHO05D009657 6.5e-23 110.2 65 73.8
Pp3c19_1061 Physcomitrium patens HOM05D007587 ORTHO05D009657 7.0e-17 90.1 45 82.2
Pp3c19_1062 Physcomitrium patens HOM05D007587 ORTHO05D009657 2.0e-16 88.6 44 81.8
AagrBONN_evm.TU.Sc2ySwM_117.169 Anthoceros agrestis HOM05D007587 ORTHO05D009657 8.0e-13 76.6 48 64.6
Cfa017911 Carpinus fangiana HOM05D007587 ORTHO05D009657 1.8e-12 75.5 61 47.5
CiPaw.15G043600 Carya illinoinensis HOM05D007587 ORTHO05D009657 3.0e-12 74.7 63 47.6
Gohir.A01G124700 Gossypium hirsutum HOM05D007587 ORTHO05D009657 3.0e-12 74.7 48 58.3
Gohir.D01G112300 Gossypium hirsutum HOM05D007587 ORTHO05D009657 3.0e-12 74.7 48 58.3
Gorai.002G137200 Gossypium raimondii HOM05D007587 ORTHO05D009657 3.0e-12 74.7 48 58.3
CAN.G416.39 Capsicum annuum HOM05D007587 ORTHO05D009657 4.0e-12 74.3 46 63.0
Nitab4.5_0015343g0010 Nicotiana tabacum HOM05D007587 ORTHO05D009657 5.2e-12 73.9 46 65.2
Atru.chr13.897 Acer truncatum HOM05D007587 ORTHO05D009657 6.8e-12 73.6 47 59.6
Manes.18G051550 Manihot esculenta HOM05D007587 ORTHO05D009657 6.8e-12 73.6 66 48.5
vmacro04608 Vaccinium macrocarpon HOM05D007587 ORTHO05D009657 6.8e-12 73.6 67 49.3
Potri.005G150300 Populus trichocarpa HOM05D007587 ORTHO05D009657 8.8e-12 73.2 46 60.9
COL.COLO4_22178 Corchorus olitorius HOM05D007587 ORTHO05D009657 1.2e-11 72.8 70 45.7
Nn5g27362 Nelumbo nucifera HOM05D007587 ORTHO05D009657 1.5e-11 72.4 46 58.7
PGSC0003DMG400004952 Solanum tuberosum HOM05D007587 ORTHO05D009657 1.5e-11 72.4 46 60.9
GSVIVG01034787001 Vitis vinifera HOM05D007587 ORTHO05D009657 2.0e-11 72.0 53 52.8
CDE06G1347 Ceratophyllum demersum HOM05D007587 ORTHO05D009657 2.6e-11 71.6 46 58.7
Mapoly0026s0006 Marchantia polymorpha HOM05D007587 ORTHO05D009657 2.6e-11 71.6 48 58.3
vmacro04607 Vaccinium macrocarpon HOM05D007587 ORTHO05D009657 3.4e-11 71.2 67 47.8
CSS0045179 Camellia sinensis var. sinensis HOM05D007587 ORTHO05D009657 4.4e-11 70.9 46 58.7
CiPaw.15G043500 Carya illinoinensis HOM05D007587 ORTHO05D009657 4.4e-11 70.9 66 47.0
Migut.H00502 Erythranthe guttata HOM05D007587 ORTHO05D009657 4.4e-11 70.9 67 50.7
QL02p001961 Quercus lobata HOM05D007587 ORTHO05D009657 4.4e-11 70.9 66 43.9
vmacro04609 Vaccinium macrocarpon HOM05D007587 ORTHO05D009657 4.4e-11 70.9 67 47.8
QL06p044263 Quercus lobata HOM05D007587 ORTHO05D009657 7.5e-11 70.1 63 46.0
TAR381G1104 Trochodendron aralioides HOM05D007587 ORTHO05D009657 7.5e-11 70.1 57 47.4
Zm00001eb052110 Zea mays HOM05D007587 ORTHO05D009657 7.5e-11 70.1 64 46.9
Nn5g27360 Nelumbo nucifera HOM05D007587 ORTHO05D009657 9.8e-11 69.7 46 58.7
Thecc.08G082100 Theobroma cacao HOM05D007587 ORTHO05D009657 9.8e-11 69.7 45 55.6
CDE04G0885 Ceratophyllum demersum HOM05D007587 ORTHO05D009657 1.3e-10 69.3 50 52.0
Manes.13G132300 Manihot esculenta HOM05D007587 ORTHO05D009657 1.3e-10 69.3 58 48.3
Rhsim07G0216100 Rhododendron simsii HOM05D007587 ORTHO05D009657 1.3e-10 69.3 46 60.9
Rhsim07G0216200 Rhododendron simsii HOM05D007587 ORTHO05D009657 1.3e-10 69.3 46 60.9
Os12g0596101 Oryza sativa ssp. japonica HOM05D007587 ORTHO05D009657 1.7e-10 68.9 61 50.8
Zm00001eb135300 Zea mays HOM05D007587 ORTHO05D009657 1.7e-10 68.9 45 68.9
COL.COLO4_35374 Corchorus olitorius HOM05D007587 ORTHO05D009657 2.2e-10 68.6 45 55.6
Nn5g27361 Nelumbo nucifera HOM05D007587 ORTHO05D009657 2.2e-10 68.6 62 50.0
SalBow7G1850 Salvia bowleyana HOM05D007587 ORTHO05D009657 2.2e-10 68.6 45 62.2
TAR381G0827 Trochodendron aralioides HOM05D007587 ORTHO05D009657 2.2e-10 68.6 46 58.7
Hma1.2p1_2651F.1_g326150 Hydrangea macrophylla HOM05D007587 ORTHO05D009657 2.8e-10 68.2 46 56.5
Nn4g24320 Nelumbo nucifera HOM05D007587 ORTHO05D009657 2.8e-10 68.2 46 54.3
Os03g0673700 Oryza sativa ssp. japonica HOM05D007587 ORTHO05D009657 2.8e-10 68.2 64 46.9
Phvul.003G249500 Phaseolus vulgaris HOM05D007587 ORTHO05D009657 2.8e-10 68.2 48 54.2
CSS0038445 Camellia sinensis var. sinensis HOM05D007587 ORTHO05D009657 3.7e-10 67.8 66 42.4
Atru.chr3.473 Acer truncatum HOM05D007587 ORTHO05D009657 8.3e-10 66.6 45 60.0
Migut.O00867 Erythranthe guttata HOM05D007587 ORTHO05D009657 8.3e-10 66.6 45 57.8
Lj7C15T6 Lonicera japonica HOM05D007587 ORTHO05D009657 1.1e-09 66.2 49 59.2
Cc07_g05380 Coffea canephora HOM05D007587 ORTHO05D009657 1.4e-09 65.9 61 45.9
Dinv39924 Davidia involucrata HOM05D007587 ORTHO05D009657 1.4e-09 65.9 63 42.9
Migut.C00432 Erythranthe guttata HOM05D007587 ORTHO05D009657 1.4e-09 65.9 45 57.8
Glyma.16G143900 Glycine max HOM05D007587 ORTHO05D009657 1.4e-09 65.9 48 50.0
SalBow1G8004 Salvia bowleyana HOM05D007587 ORTHO05D009657 1.4e-09 65.9 48 58.3
Actinidia29637 Actinidia chinensis HOM05D007587 ORTHO05D009657 1.8e-09 65.5 47 51.1
Cpa.g.sc15.59 Carica papaya HOM05D007587 ORTHO05D009657 2.4e-09 65.1 49 55.1
Ciclev10027038m.g Citrus clementina HOM05D007587 ORTHO05D009657 2.4e-09 65.1 52 48.1
Thecc.01G045600 Theobroma cacao HOM05D007587 ORTHO05D009657 2.4e-09 65.1 49 51.0
Medtr5g018610 Medicago truncatula HOM05D007587 ORTHO05D009657 3.1e-09 64.7 69 40.6
Solyc02g090080.1 Solanum lycopersicum HOM05D007587 ORTHO05D009657 4.1e-09 64.3 49 53.1
Cc10_g07830 Coffea canephora HOM05D007587 ORTHO05D009657 5.4e-09 63.9 46 56.5
FAN28G1310 Fragaria x ananassa HOM05D007587 ORTHO05D009657 5.4e-09 63.9 48 54.2
Glyma.02G061500 Glycine max HOM05D007587 ORTHO05D009657 5.4e-09 63.9 48 50.0
MBI16_g05020_MAGBIO Magnolia biondii HOM05D007587 ORTHO05D009657 5.4e-09 63.9 67 44.8
MBI16_g05021_MAGBIO Magnolia biondii HOM05D007587 ORTHO05D009657 7.0e-09 63.5 47 48.9
Potri.005G130750 Populus trichocarpa HOM05D007587 ORTHO05D009657 7.0e-09 63.5 49 57.1
Prupe.7G145500 Prunus persica HOM05D007587 ORTHO05D009657 7.0e-09 63.5 48 52.1
TPR.G29850 Trifolium pratense HOM05D007587 ORTHO05D009657 7.0e-09 63.5 53 50.9
Gohir.A11G188150 Gossypium hirsutum HOM05D007587 ORTHO05D009657 9.1e-09 63.2 49 55.1
Gohir.D11G194650 Gossypium hirsutum HOM05D007587 ORTHO05D009657 9.1e-09 63.2 49 55.1
Gorai.007G208100 Gossypium raimondii HOM05D007587 ORTHO05D009657 9.1e-09 63.2 49 55.1
Os03g0673400 Oryza sativa ssp. japonica HOM05D007587 ORTHO05D009657 9.1e-09 63.2 45 53.3
Manes.12G097400 Manihot esculenta HOM05D007587 ORTHO05D009657 1.2e-08 62.8 49 53.1
Psat0s261g0120 Pisum sativum HOM05D007587 ORTHO05D009657 1.2e-08 62.8 67 40.3
Nitab4.5_0005594g0030 Nicotiana tabacum HOM05D007587 ORTHO05D009657 1.6e-08 62.4 48 50.0
Psat2g163680 Pisum sativum HOM05D007587 ORTHO05D009657 1.6e-08 62.4 68 41.2
CBR_g28808 Chara braunii HOM05D007587 ORTHO05D009657 2.0e-08 62.0 44 50.0
ECA238G1538 Erigeron canadensis HOM05D003002 ORTHO05D002276 2.0e-08 62.0 49 51.0
Potri.007G034000 Populus trichocarpa HOM05D007587 ORTHO05D009657 2.0e-08 62.0 64 46.9
FAN23G2556 Fragaria x ananassa HOM05D007587 ORTHO05D009657 2.7e-08 61.6 45 55.6
Lj2g0021293 Lotus japonicus HOM05D007587 ORTHO05D009657 3.5e-08 61.2 67 41.8
Phvul.002G023800 Phaseolus vulgaris HOM05D007587 ORTHO05D009657 3.5e-08 61.2 60 43.3
arahy.Tifrunner.gnm1.ann1.986LRW Arachis hypogaea HOM05D007587 ORTHO05D009657 5.9e-08 60.5 58 41.4
arahy.Tifrunner.gnm1.ann1.JQT6QK Arachis hypogaea HOM05D007587 ORTHO05D009657 5.9e-08 60.5 58 41.4
FAN26G0670 Fragaria x ananassa HOM05D007587 ORTHO05D009657 7.7e-08 60.1 45 53.3
ClCG02G013040 Citrullus lanatus HOM05D007587 ORTHO05D009657 1.0e-07 59.7 60 40.0
Glyma.19G074100 Glycine max HOM05D007587 ORTHO05D009657 1.0e-07 59.7 48 45.8
CsaV3_2G017120 Cucumis sativus L. HOM05D007587 ORTHO05D009657 1.5e-06 55.8 48 47.9
Nn5g28989 Nelumbo nucifera HOM05D007587 ORTHO05D009657 1.5e-06 55.8 31 71.0
Sed0017528 Sechium edule HOM05D007587 ORTHO05D009657 1.5e-06 55.8 48 43.8
Glyma.11G061100 Glycine max HOM05D007587 ORTHO05D009657 1.9e-06 55.5 45 51.1


User provided reference genes

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