Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c20_18210 Physcomitrium patens HOM05D001343 ORTHO05D007223 0.0e+00 1566.2 909 100.0
Pp3c23_9770 Physcomitrium patens HOM05D001343 ORTHO05D007223 2.3e-264 916.0 931 63.4
Mapoly0179s0009 Marchantia polymorpha HOM05D001343 ORTHO05D007223 9.1e-120 435.6 693 43.0
AagrBONN_evm.TU.Sc2ySwM_344.163 Anthoceros agrestis HOM05D001343 ORTHO05D007223 6.8e-91 339.7 678 38.1
Dinv08526 Davidia involucrata HOM05D001343 ORTHO05D007223 5.0e-86 323.6 778 34.2
MD15G1233300 Malus domestica HOM05D001343 ORTHO05D007223 2.5e-85 321.2 730 35.1
GSVIVG01003839001 Vitis vinifera HOM05D001343 ORTHO05D007223 1.6e-84 318.5 728 35.6
Actinidia17384 Actinidia chinensis HOM05D001343 ORTHO05D007223 4.7e-84 317.0 774 33.9
SGA_v2.0_scaffold12G05990 Striga asiatica HOM05D001343 ORTHO05D007223 2.3e-83 314.7 826 33.1
Atru.chr3.956 Acer truncatum HOM05D001343 ORTHO05D007223 5.2e-83 313.5 778 34.1
ATR0661G538 Amborella trichopoda HOM05D001343 ORTHO05D007223 2.4e-80 304.7 702 34.0
Aqoxy5G01035 Aquilegia oxysepala HOM05D001343 ORTHO05D007223 3.2e-80 304.3 727 34.7
ClCG10G000340 Citrullus lanatus HOM05D001343 ORTHO05D007223 4.1e-80 303.9 523 41.9
Duzib187G0329 Durio zibethinus HOM05D001343 ORTHO05D007223 7.0e-80 303.1 792 33.6
CANSAT25G0854 Cannabis sativa HOM05D001343 ORTHO05D007223 1.0e-78 299.3 724 34.0
CANSAT25G1453 Cannabis sativa HOM05D001343 ORTHO05D007223 2.3e-78 298.1 725 33.9
Potri.005G099800 Populus trichocarpa HOM05D001343 ORTHO05D007223 3.9e-78 297.4 562 38.8
Dinv40173 Davidia involucrata HOM05D001343 ORTHO05D007223 5.0e-78 297.0 615 37.4
TAR381G1734 Trochodendron aralioides HOM05D001343 ORTHO05D007223 1.5e-77 295.4 549 40.3
Hund03615 Selenicereus undatus HOM05D001343 ORTHO05D007223 9.5e-77 292.7 695 33.8
Duzib147G0638 Durio zibethinus HOM05D001343 ORTHO05D007223 4.7e-76 290.4 777 32.8
Hma1.2p1_0300F.1_g118160 Hydrangea macrophylla HOM05D001343 ORTHO05D007223 4.7e-76 290.4 778 31.9
Sabra05G0082500 Salix brachista HOM05D001343 ORTHO05D007223 8.0e-76 289.7 563 39.1
Sed0023593 Sechium edule HOM05D001343 ORTHO05D007223 1.4e-75 288.9 814 32.7
HanXRQChr14g0442391 Helianthus annuus HOM05D001343 ORTHO05D007223 1.8e-75 288.5 515 40.6
QL06p052741 Quercus lobata HOM05D001343 ORTHO05D007223 2.3e-75 288.1 804 32.2
CsaV3_3G000380 Cucumis sativus L. HOM05D001343 ORTHO05D007223 4.0e-75 287.3 834 32.5
THA.LOC104826465 Tarenaya hassleriana HOM05D001343 ORTHO05D007223 3.7e-73 280.8 515 39.6
BcaB04g20130 Brassica carinata HOM05D001343 ORTHO05D002008 4.9e-73 280.4 581 35.6
Prupe.7G179600 Prunus persica HOM05D001343 ORTHO05D007223 4.1e-72 277.3 707 33.5
Carub.0008s2848 Capsella rubella HOM05D001343 ORTHO05D007223 1.2e-71 275.8 818 30.4
Thhalv10003686m.g Eutrema salsugineum HOM05D001343 ORTHO05D007223 2.7e-71 274.6 519 37.8
Phvul.002G114800 Phaseolus vulgaris HOM05D001343 ORTHO05D007223 6.0e-71 273.5 780 31.8
MD02G1119300 Malus domestica HOM05D001343 ORTHO05D007223 2.3e-70 271.6 707 32.4
PSO170G3735 Papaver somniferum HOM05D001343 ORTHO05D007223 3.9e-70 270.8 542 36.3
PSO210G1702 Papaver somniferum HOM05D001343 ORTHO05D007223 3.9e-70 270.8 778 31.4
TWI09G1271 Tripterygium wilfordii HOM05D001343 ORTHO05D007223 5.0e-70 270.4 785 33.0
Nitab4.5_0000702g0060 Nicotiana tabacum HOM05D001343 ORTHO05D007223 2.5e-69 268.1 833 30.9
Lalb_Chr05g0211921 Lupinus albus HOM05D001343 ORTHO05D007223 5.6e-69 266.9 777 31.8
ECA238G2213 Erigeron canadensis HOM05D001343 ORTHO05D007223 1.6e-68 265.4 546 36.8
Gohir.A10G099100 Gossypium hirsutum HOM05D001343 ORTHO05D007223 2.1e-68 265.0 515 37.9
Peaxi162Scf01446g00025 Petunia axillaris HOM05D001343 ORTHO05D007223 2.8e-68 264.6 794 30.7
MELO3C013733.2 Cucumis melo HOM05D001343 ORTHO05D007223 8.0e-68 263.1 511 39.3
EL10Ac6g15468 Beta vulgaris HOM05D001343 ORTHO05D007223 1.8e-67 261.9 763 31.6
AT5G66030 Arabidopsis thaliana HOM05D001343 ORTHO05D007223 2.0e-66 258.5 797 30.9
Ciclev10024922m.g Citrus clementina HOM05D001343 ORTHO05D007223 2.6e-66 258.1 839 30.8
COL.COLO4_22537 Corchorus olitorius HOM05D001343 ORTHO05D007223 2.6e-66 258.1 512 38.5
SEGI_12448 Sequoiadendron giganteum HOM05D001343 ORTHO05D007223 4.4e-66 257.3 723 31.3
Os07g0472500 Oryza sativa ssp. japonica HOM05D001343 ORTHO05D007223 1.3e-65 255.8 485 38.1
PGR083G0487 Punica granatum HOM05D001343 ORTHO05D007223 1.3e-65 255.8 710 31.4
Zm00001eb104860 Zea mays HOM05D001343 ORTHO05D007223 4.9e-65 253.8 696 32.5
FAN23G1852 Fragaria x ananassa HOM05D001343 ORTHO05D007223 8.3e-65 253.1 801 30.5
CAN.G890.76 Capsicum annuum HOM05D001343 ORTHO05D007223 2.4e-64 251.5 827 30.8
AL8G45590 Arabidopsis lyrata HOM05D001343 ORTHO05D007223 1.2e-63 249.2 533 36.4
BcaC04g23105 Brassica carinata HOM05D001343 ORTHO05D002008 1.2e-63 249.2 501 36.7
C09p12110 Brassica napus HOM05D001343 ORTHO05D002008 1.2e-63 249.2 501 36.7
vmacro20524 Vaccinium macrocarpon HOM05D001343 ORTHO05D007223 1.2e-63 249.2 726 32.2
CiPaw.07G004100 Carya illinoinensis HOM05D001343 ORTHO05D007223 2.7e-63 248.1 774 31.1
FvH4_1g10521 Fragaria vesca HOM05D001343 ORTHO05D007223 1.7e-62 245.4 707 31.5
Nn5g30956 Nelumbo nucifera HOM05D001343 ORTHO05D007223 3.0e-62 244.6 739 31.9
A09p10220 Brassica napus HOM05D001343 ORTHO05D002008 5.1e-62 243.8 583 33.1
BolC9t54101H Brassica oleracea HOM05D001343 ORTHO05D002008 6.6e-62 243.4 590 33.2
Gohir.D10G089000 Gossypium hirsutum HOM05D001343 ORTHO05D007223 8.6e-62 243.0 571 35.2
Gorai.011G097900 Gossypium raimondii HOM05D001343 ORTHO05D007223 8.6e-62 243.0 571 35.2
TPR.G25095 Trifolium pratense HOM05D001343 ORTHO05D007223 3.3e-61 241.1 516 36.4
BraA09t36667Z Brassica rapa HOM05D001343 ORTHO05D002008 4.3e-61 240.7 607 32.0
Haze_03675 Corylus avellana HOM05D001343 ORTHO05D007223 5.6e-61 240.4 792 30.4
FAN19G1061 Fragaria x ananassa HOM05D001343 ORTHO05D007223 7.3e-61 240.0 707 31.3
Migut.L00734 Erythranthe guttata HOM05D001343 ORTHO05D007223 1.2e-60 239.2 456 40.4
Sp2g30660 Schrenkiella parvula HOM05D001343 ORTHO05D007223 2.1e-60 238.4 521 35.9
Cpa.g.sc55.186 Carica papaya HOM05D001343 ORTHO05D007223 3.6e-60 237.7 780 30.5
Manes.02G112700 Manihot esculenta HOM05D001343 ORTHO05D007223 4.7e-60 237.3 489 35.8
Thecc.01G007100 Theobroma cacao HOM05D001343 ORTHO05D007223 6.2e-60 236.9 778 30.3
unitig_88.g27773 Utricularia gibba HOM05D001343 ORTHO05D007223 1.4e-59 235.7 625 33.9
Atru.chr3.968 Acer truncatum HOM05D001343 ORTHO05D007223 1.8e-59 235.3 771 30.2
FAN28G2189 Fragaria x ananassa HOM05D001343 ORTHO05D007223 8.9e-59 233.0 801 29.8
AUR62003379 Chenopodium quinoa HOM05D001343 ORTHO05D007223 1.2e-58 232.6 734 29.7
Ah.03g148390 Amaranthus hybridus HOM05D001343 ORTHO05D007223 1.4e-56 225.7 775 30.3
Nitab4.5_0002967g0060 Nicotiana tabacum HOM05D001343 ORTHO05D007223 1.4e-56 225.7 515 34.6
Actinidia22910 Actinidia chinensis HOM05D001343 ORTHO05D007223 7.1e-56 223.4 781 31.0
MSTRG.15594 Avicennia marina HOM05D001343 ORTHO05D007223 7.1e-56 223.4 784 29.0
CSS0043948 Camellia sinensis var. sinensis HOM05D001343 ORTHO05D007223 3.5e-55 221.1 519 35.5
Solyc02g082840.3 Solanum lycopersicum HOM05D001343 ORTHO05D007223 1.0e-54 219.5 808 27.8
QL06p053829 Quercus lobata HOM05D001343 ORTHO05D007223 1.3e-54 219.2 773 29.6
Lj2g0004784 Lotus japonicus HOM05D001343 ORTHO05D007223 3.9e-54 217.6 556 32.4
SalBow5G5069 Salvia bowleyana HOM05D001343 ORTHO05D007223 5.1e-54 217.2 704 29.4
Sopen02g027640 Solanum pennellii HOM05D001343 ORTHO05D007223 2.5e-53 214.9 806 28.0
HPP92_003502 Vanilla planifolia HOM05D001343 ORTHO05D007223 4.3e-53 214.2 734 29.2
Manes.01G153700 Manihot esculenta HOM05D001343 ORTHO05D007223 1.2e-52 212.6 645 30.4
AUR62029449 Chenopodium quinoa HOM05D001343 ORTHO05D007223 2.8e-52 211.5 737 28.9
arahy.Tifrunner.gnm1.ann1.AU9Y8G Arachis hypogaea HOM05D001343 ORTHO05D007223 1.8e-51 208.8 558 32.1
arahy.Tifrunner.gnm1.ann1.SLQH96 Arachis hypogaea HOM05D001343 ORTHO05D007223 1.8e-51 208.8 558 32.1
CARHR281730 Cardamine hirsuta HOM05D001343 ORTHO05D007223 2.0e-50 205.3 423 37.1
Cc07_g11650 Coffea canephora HOM05D001343 ORTHO05D007223 3.2e-48 198.0 515 34.0
Lsat_1_v5_gn_2_74420 Lactuca sativa HOM05D001343 ORTHO05D007223 3.2e-48 198.0 706 29.6
Sc16g0001690 Simmondsia chinensis HOM05D001343 ORTHO05D007223 5.4e-48 197.2 597 31.3
Glyma.01G159900 Glycine max HOM05D001343 ORTHO05D007223 8.1e-44 183.3 778 27.1
Eucgr.J02528 Eucalyptus grandis HOM05D001343 ORTHO05D007223 7.6e-42 176.8 779 27.7
Medtr5g023770 Medicago truncatula HOM05D001343 ORTHO05D007223 9.9e-42 176.4 774 27.6
Ca_24963_v3 Cicer arietinum L. HOM05D001343 ORTHO05D007223 1.9e-37 162.2 801 27.1
VMungo1215G1031 Vigna mungo HOM05D001343 ORTHO05D007223 2.5e-37 161.8 780 27.1
Glyma.11G084200 Glycine max HOM05D001343 ORTHO05D007223 4.3e-37 161.0 778 27.0
CDE06G1375 Ceratophyllum demersum HOM05D001343 ORTHO05D007223 3.6e-36 157.9 277 40.1
CBR_g34809 Chara braunii HOM05D000019 ORTHO05D000002 6.2e-36 157.1 361 34.9
DCAR_011583 Daucus carota HOM05D001343 ORTHO05D007223 6.2e-36 157.1 458 34.3
RcHm_v2.0_Chr2g0097451 Rosa chinensis HOM05D001343 ORTHO05D007223 1.4e-35 156.0 195 52.8
Lj4A232G45 Lonicera japonica HOM05D001343 ORTHO05D007223 1.5e-34 152.5 694 26.7
CDE07G1064 Ceratophyllum demersum HOM05D001343 ORTHO05D007223 3.8e-33 147.9 253 41.5
Migut.L00811 Erythranthe guttata HOM05D001343 ORTHO05D007223 9.3e-32 143.3 138 63.8
Psat2g150480 Pisum sativum HOM05D001343 ORTHO05D007223 9.6e-29 133.3 183 47.0
QL06p053793 Quercus lobata HOM05D001343 ORTHO05D007223 4.0e-27 127.9 143 59.4
Rhsim10G0198000 Rhododendron simsii HOM05D001343 ORTHO05D007223 5.3e-27 127.5 158 52.5
CDE07G1287 Ceratophyllum demersum HOM05D001343 ORTHO05D007223 1.1e-21 109.8 369 31.2
Actinidia26548 Actinidia chinensis HOM05D001343 ORTHO05D007223 4.8e-20 104.4 221 33.9
RcHm_v2.0_Chr2g0097461 Rosa chinensis HOM05D001343 ORTHO05D007223 7.9e-15 87.0 295 29.2
arahy.Tifrunner.gnm1.ann1.6P6C0I Arachis hypogaea HOM05D001343 ORTHO05D007223 2.3e-14 85.5 95 57.9
RcHm_v2.0_Chr2g0097571 Rosa chinensis HOM05D001343 ORTHO05D007223 1.9e-13 82.4 123 46.3
RcHm_v2.0_Chr2g0097581 Rosa chinensis HOM05D001343 ORTHO05D007223 3.7e-12 78.2 295 29.2
arahy.Tifrunner.gnm1.ann1.T78FCF Arachis hypogaea HOM05D001343 ORTHO05D007223 2.4e-11 75.5 75 60.0
QL06p052753 Quercus lobata HOM05D003687 ORTHO05D007223 2.4e-11 75.5 54 74.1
Cre09.g398808 Chlamydomonas reinhardtii HOM05D001343 ORTHO05D007223 1.0e-09 70.1 88 44.3
arahy.Tifrunner.gnm1.ann1.9PSP05 Arachis hypogaea HOM05D001343 ORTHO05D007223 3.8e-09 68.2 174 34.5
CDE06G1033 Ceratophyllum demersum HOM05D001343 ORTHO05D007223 5.0e-09 67.8 88 44.3
HPP92_003508 Vanilla planifolia HOM05D001343 ORTHO05D007223 1.1e-08 66.6 56 66.1
arahy.Tifrunner.gnm1.ann1.ISY8LN Arachis hypogaea HOM05D001343 ORTHO05D007223 3.6e-07 61.6 156 31.4
CBR_g34810 Chara braunii HOM05D043006 ORTHO05D000353 6.1e-07 60.8 138 32.6
Migut.L00927 Erythranthe guttata HOM05D001343 ORTHO05D007223 1.4e-06 59.7 87 33.3


User provided reference genes

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