Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c20_17780 Physcomitrium patens HOM05D004290 ORTHO05D005025 2.0e-79 298.9 140 100.0
AagrBONN_evm.TU.Sc2ySwM_344.2294 Anthoceros agrestis HOM05D004290 ORTHO05D005025 1.9e-56 222.6 135 71.9
CiPaw.05G172700 Carya illinoinensis HOM05D004290 ORTHO05D005025 3.8e-49 198.4 136 61.8
CiPaw.05G172800 Carya illinoinensis HOM05D004290 ORTHO05D005025 4.1e-48 194.9 136 61.0
Mapoly0059s0094 Marchantia polymorpha HOM05D004290 ORTHO05D005025 1.7e-46 189.5 135 57.0
Nn4g23673 Nelumbo nucifera HOM05D004290 ORTHO05D005025 1.7e-46 189.5 133 59.4
PSO478G2631 Papaver somniferum HOM05D004290 ORTHO05D005025 2.3e-46 189.1 135 61.5
RcHm_v2.0_Chr4g0436191 Rosa chinensis HOM05D004290 ORTHO05D005025 6.6e-46 187.6 135 57.8
Thecc.02G363400 Theobroma cacao HOM05D004290 ORTHO05D005025 1.5e-45 186.4 134 57.5
Duzib251G0274 Durio zibethinus HOM05D004290 ORTHO05D005025 2.5e-45 185.7 131 58.8
ATR1147G043 Amborella trichopoda HOM05D004290 ORTHO05D005025 3.3e-45 185.3 131 58.0
Manes.06G074500 Manihot esculenta HOM05D004290 ORTHO05D005025 3.3e-45 185.3 134 58.2
Sp5g23870 Schrenkiella parvula HOM05D004290 ORTHO05D005025 3.3e-45 185.3 132 58.3
CBR_g26184 Chara braunii HOM05D004290 ORTHO05D005025 4.3e-45 184.9 136 61.0
Sabra08G0086600 Salix brachista HOM05D004290 ORTHO05D005025 7.3e-45 184.1 133 57.1
C02p25170 Brassica napus HOM05D004290 ORTHO05D005025 9.6e-45 183.7 137 58.4
QL03p037189 Quercus lobata HOM05D004290 ORTHO05D005025 9.6e-45 183.7 135 57.0
CARHR061580 Cardamine hirsuta HOM05D004290 ORTHO05D005025 1.2e-44 183.3 134 56.7
BcaB05g24409 Brassica carinata HOM05D004290 ORTHO05D005025 1.6e-44 183.0 136 57.4
A02p15320 Brassica napus HOM05D004290 ORTHO05D005025 2.8e-44 182.2 137 58.4
Lj3A1022T62 Lonicera japonica HOM05D004290 ORTHO05D005025 3.6e-44 181.8 135 55.6
BraA02t06593Z Brassica rapa HOM05D004290 ORTHO05D005025 4.7e-44 181.4 137 57.7
Cfa008781 Carpinus fangiana HOM05D004290 ORTHO05D005025 4.7e-44 181.4 143 55.9
Ciclev10033020m.g Citrus clementina HOM05D004290 ORTHO05D005025 4.7e-44 181.4 131 58.0
COL.COLO4_07852 Corchorus olitorius HOM05D004290 ORTHO05D005025 4.7e-44 181.4 129 58.9
Haze_11793 Corylus avellana HOM05D004290 ORTHO05D005025 6.2e-44 181.0 143 55.9
Gohir.A13G071200 Gossypium hirsutum HOM05D004290 ORTHO05D005025 6.2e-44 181.0 134 56.0
BolC2t08596H Brassica oleracea HOM05D004290 ORTHO05D005025 8.1e-44 180.6 137 57.7
FvH4_4g28340 Fragaria vesca HOM05D004290 ORTHO05D005025 1.1e-43 180.3 135 54.8
FAN22G0640 Fragaria x ananassa HOM05D004290 ORTHO05D005025 1.1e-43 180.3 135 54.8
FAN12G2228 Fragaria x ananassa HOM05D004290 ORTHO05D005025 2.4e-43 179.1 135 54.1
CANSAT64G1327 Cannabis sativa HOM05D004290 ORTHO05D005025 3.1e-43 178.7 130 57.7
DCAR_026707 Daucus carota HOM05D004290 ORTHO05D005025 3.1e-43 178.7 133 57.9
C04p37630 Brassica napus HOM05D004290 ORTHO05D005025 4.0e-43 178.3 135 57.8
TWI31G0716 Tripterygium wilfordii HOM05D004290 ORTHO05D005025 4.0e-43 178.3 134 58.2
Gohir.D13G069200 Gossypium hirsutum HOM05D004290 ORTHO05D005025 5.2e-43 177.9 134 54.5
Gorai.013G079300 Gossypium raimondii HOM05D004290 ORTHO05D005025 5.2e-43 177.9 134 54.5
DCAR_023699 Daucus carota HOM05D004290 ORTHO05D005025 6.9e-43 177.6 134 53.7
HanXRQChr08g0214461 Helianthus annuus HOM05D004290 ORTHO05D005025 6.9e-43 177.6 131 54.2
Dinv16527 Davidia involucrata HOM05D004290 ORTHO05D005025 8.9e-43 177.2 129 58.9
FAN17G1675 Fragaria x ananassa HOM05D004290 ORTHO05D005025 8.9e-43 177.2 135 54.1
AT1G68760 Arabidopsis thaliana HOM05D004290 ORTHO05D005025 1.2e-42 176.8 134 56.0
DCAR_017507 Daucus carota HOM05D004290 ORTHO05D005025 1.2e-42 176.8 132 55.3
DCAR_026708 Daucus carota HOM05D004290 ORTHO05D005025 1.2e-42 176.8 132 55.3
THA.LOC104821971 Tarenaya hassleriana HOM05D004290 ORTHO05D005025 3.4e-42 175.3 133 57.1
Dinv05808 Davidia involucrata HOM05D000436 ORTHO05D005025 4.4e-42 174.9 128 57.8
Potri.008G114300 Populus trichocarpa HOM05D004290 ORTHO05D005025 4.4e-42 174.9 133 54.9
AL2G27690 Arabidopsis lyrata HOM05D004290 ORTHO05D005025 5.8e-42 174.5 134 55.2
Eucgr.B03066 Eucalyptus grandis HOM05D004290 ORTHO05D005025 5.8e-42 174.5 133 56.4
EL10Ac6g14527 Beta vulgaris HOM05D004290 ORTHO05D005025 7.6e-42 174.1 131 53.4
Thhalv10019297m.g Eutrema salsugineum HOM05D004290 ORTHO05D005025 9.9e-42 173.7 133 56.4
Aa31sc79G10 Aethionema arabicum HOM05D004290 ORTHO05D005025 2.2e-41 172.6 131 55.7
Prupe.1G302800 Prunus persica HOM05D004290 ORTHO05D005025 2.2e-41 172.6 135 55.6
Potri.008G114400 Populus trichocarpa HOM05D004290 ORTHO05D005025 2.9e-41 172.2 133 54.9
Cc11_g10790 Coffea canephora HOM05D004290 ORTHO05D005025 3.8e-41 171.8 133 54.9
Glyma.01G090900 Glycine max HOM05D004290 ORTHO05D005025 3.8e-41 171.8 136 57.4
MELO3C005349.2 Cucumis melo HOM05D004290 ORTHO05D005025 4.9e-41 171.4 138 55.8
CsaV3_5G028890 Cucumis sativus L. HOM05D004290 ORTHO05D005025 4.9e-41 171.4 138 55.8
Nitab4.5_0013408g0010 Nicotiana tabacum HOM05D004290 ORTHO05D005025 4.9e-41 171.4 133 55.6
Aqoxy3G03865 Aquilegia oxysepala HOM05D004290 ORTHO05D005025 6.4e-41 171.0 132 53.8
Hund05546 Selenicereus undatus HOM05D004290 ORTHO05D005025 6.4e-41 171.0 136 52.9
arahy.Tifrunner.gnm1.ann1.IBNT6Z Arachis hypogaea HOM05D004290 ORTHO05D005025 8.4e-41 170.6 135 55.6
arahy.Tifrunner.gnm1.ann1.U655LF Arachis hypogaea HOM05D004290 ORTHO05D005025 8.4e-41 170.6 135 55.6
Migut.L01112 Erythranthe guttata HOM05D004290 ORTHO05D005025 1.1e-40 170.2 133 54.1
Ah.02g127350 Amaranthus hybridus HOM05D004290 ORTHO05D005025 1.9e-40 169.5 129 54.3
Carub.0002s1532 Capsella rubella HOM05D004290 ORTHO05D005025 1.9e-40 169.5 134 54.5
Prupe.1G303000 Prunus persica HOM05D004290 ORTHO05D005025 1.9e-40 169.5 135 54.1
Cc11_g10800 Coffea canephora HOM05D004290 ORTHO05D005025 2.4e-40 169.1 133 52.6
CsaV3_5G033840 Cucumis sativus L. HOM05D004290 ORTHO05D005025 2.4e-40 169.1 136 50.0
BcaC03g14984 Brassica carinata HOM05D004290 ORTHO05D005025 3.2e-40 168.7 136 55.1
MD13G1049100 Malus domestica HOM05D004290 ORTHO05D005025 3.2e-40 168.7 132 56.1
Sed0004732 Sechium edule HOM05D004290 ORTHO05D005025 4.2e-40 168.3 135 56.3
GSVIVG01011978001 Vitis vinifera HOM05D004290 ORTHO05D005025 4.2e-40 168.3 133 57.1
ECA233G1907 Erigeron canadensis HOM05D004290 ORTHO05D005025 5.4e-40 167.9 133 51.1
Nitab4.5_0001178g0080 Nicotiana tabacum HOM05D004290 ORTHO05D005025 5.4e-40 167.9 133 54.9
MELO3C012202.2 Cucumis melo HOM05D004290 ORTHO05D005025 7.1e-40 167.5 135 49.6
FvH4_4g28310 Fragaria vesca HOM05D004290 ORTHO05D005025 9.3e-40 167.2 138 50.0
FAN12G0523 Fragaria x ananassa HOM05D004290 ORTHO05D005025 9.3e-40 167.2 138 50.0
SGA_v2.0_scaffold14G06801 Striga asiatica HOM05D004290 ORTHO05D005025 1.2e-39 166.8 132 54.5
ClCG00G001430 Citrullus lanatus HOM05D004290 ORTHO05D005025 1.6e-39 166.4 135 50.4
ClCG05G023160 Citrullus lanatus HOM05D004290 ORTHO05D005025 1.6e-39 166.4 135 50.4
QL03p036461 Quercus lobata HOM05D004290 ORTHO05D005025 1.6e-39 166.4 129 51.9
Phvul.003G024900 Phaseolus vulgaris HOM05D004290 ORTHO05D005025 2.1e-39 166.0 133 55.6
Sc04g0006830 Simmondsia chinensis HOM05D004290 ORTHO05D005025 2.1e-39 166.0 135 51.9
MBI10_g35795_MAGBIO Magnolia biondii HOM05D004290 ORTHO05D005025 2.7e-39 165.6 135 49.6
FvH4_6g24180 Fragaria vesca HOM05D004290 ORTHO05D005025 3.5e-39 165.2 131 52.7
FAN14G4265 Fragaria x ananassa HOM05D004290 ORTHO05D005025 3.5e-39 165.2 131 52.7
SGA_v2.0_scaffold14G06802 Striga asiatica HOM05D004290 ORTHO05D005025 3.5e-39 165.2 132 54.5
FAN09G0247 Fragaria x ananassa HOM05D004290 ORTHO05D005025 4.6e-39 164.9 131 53.4
Aqoxy3G03864 Aquilegia oxysepala HOM05D004290 ORTHO05D005025 6.0e-39 164.5 133 53.4
HPP92_021836 Vanilla planifolia HOM05D004290 ORTHO05D005025 6.0e-39 164.5 132 52.3
CDE10G0275 Ceratophyllum demersum HOM05D004290 ORTHO05D005025 7.8e-39 164.1 133 57.1
PGR102G2310 Punica granatum HOM05D004290 ORTHO05D005025 7.8e-39 164.1 135 56.3
MSTRG.7697 Avicennia marina HOM05D004290 ORTHO05D005025 1.0e-38 163.7 131 50.4
RcHm_v2.0_Chr2g0142071 Rosa chinensis HOM05D004290 ORTHO05D005025 1.0e-38 163.7 138 50.0
RcHm_v2.0_Chr2g0142081 Rosa chinensis HOM05D004290 ORTHO05D005025 1.0e-38 163.7 138 50.0
RcHm_v2.0_Chr2g0142111 Rosa chinensis HOM05D004290 ORTHO05D005025 1.0e-38 163.7 138 50.0
RcHm_v2.0_Chr4g0436181 Rosa chinensis HOM05D004290 ORTHO05D005025 1.0e-38 163.7 139 51.1
RcHm_v2.0_Chr6g0244161 Rosa chinensis HOM05D004290 ORTHO05D005025 1.0e-38 163.7 136 52.2
ClCG05G023170 Citrullus lanatus HOM05D004290 ORTHO05D005025 1.3e-38 163.3 131 49.6
Lj2g0025619 Lotus japonicus HOM05D004290 ORTHO05D005025 1.3e-38 163.3 136 52.9
Lalb_Chr04g0255051 Lupinus albus HOM05D004290 ORTHO05D005025 2.3e-38 162.5 135 55.6
Sed0009817 Sechium edule HOM05D004290 ORTHO05D005025 2.3e-38 162.5 134 48.5
RcHm_v2.0_Chr2g0142121 Rosa chinensis HOM05D004290 ORTHO05D005025 3.0e-38 162.2 138 49.3
MD13G1048900 Malus domestica HOM05D004290 ORTHO05D005025 3.9e-38 161.8 131 52.7
Solyc05g010015.1 Solanum lycopersicum HOM05D004290 ORTHO05D005025 3.9e-38 161.8 133 51.9
SalBow8G1203 Salvia bowleyana HOM05D004290 ORTHO05D005025 5.1e-38 161.4 131 51.1
SalBow8G5193 Salvia bowleyana HOM05D004290 ORTHO05D005025 5.1e-38 161.4 131 51.1
Sopen05g005830 Solanum pennellii HOM05D004290 ORTHO05D005025 6.6e-38 161.0 133 51.9
MD16G1050100 Malus domestica HOM05D004290 ORTHO05D005025 8.7e-38 160.6 133 51.9
FAN09G2488 Fragaria x ananassa HOM05D004290 ORTHO05D005025 1.1e-37 160.2 132 53.0
ECA234G2024 Erigeron canadensis HOM05D004290 ORTHO05D005025 2.5e-37 159.1 134 51.5
Ca_19617_v3 Cicer arietinum L. HOM05D004290 ORTHO05D005025 4.3e-37 158.3 136 51.5
Ca_30768_v3 Cicer arietinum L. HOM05D004290 ORTHO05D005025 4.3e-37 158.3 136 51.5
HanXRQChr16g0528801 Helianthus annuus HOM05D004290 ORTHO05D005025 4.3e-37 158.3 132 53.0
ClCG01G005800 Citrullus lanatus HOM05D004290 ORTHO05D005025 5.6e-37 157.9 173 45.1
Lsat_1_v5_gn_4_17281 Lactuca sativa HOM05D004290 ORTHO05D005025 1.3e-36 156.8 134 53.0
Psat2g074600 Pisum sativum HOM05D004290 ORTHO05D005025 1.3e-36 156.8 136 49.3
FAN07G1902 Fragaria x ananassa HOM05D004290 ORTHO05D005025 1.6e-36 156.4 135 48.9
FAN12G2396 Fragaria x ananassa HOM05D004290 ORTHO05D005025 1.6e-36 156.4 135 48.9
Lsat_1_v5_gn_8_37520 Lactuca sativa HOM05D004290 ORTHO05D005025 1.6e-36 156.4 124 50.8
Prupe.1G302900 Prunus persica HOM05D004290 ORTHO05D005025 1.6e-36 156.4 135 52.6
FvH4_4g28300 Fragaria vesca HOM05D004290 ORTHO05D005025 3.6e-36 155.2 135 48.9
HanXRQChr16g0528791 Helianthus annuus HOM05D004290 ORTHO05D005025 6.2e-36 154.5 134 52.2
Peaxi162Scf00118g01310 Petunia axillaris HOM05D004290 ORTHO05D005025 1.4e-35 153.3 131 46.6
Solyc03g043860.2 Solanum lycopersicum HOM05D004290 ORTHO05D005025 1.4e-35 153.3 138 47.1
Cre03.g184400 Chlamydomonas reinhardtii HOM05D004290 ORTHO05D005025 1.8e-35 152.9 132 51.5
TPR.G33571 Trifolium pratense HOM05D004290 ORTHO05D005025 1.8e-35 152.9 139 52.5
MD16G1050200 Malus domestica HOM05D004290 ORTHO05D005025 3.1e-35 152.1 131 51.1
AUR62007751 Chenopodium quinoa HOM05D004290 ORTHO05D005025 4.0e-35 151.8 131 49.6
Medtr5g062660 Medicago truncatula HOM05D004290 ORTHO05D005025 6.9e-35 151.0 136 50.0
SalBow8G3034 Salvia bowleyana HOM05D004290 ORTHO05D005025 2.6e-34 149.1 133 48.9
unitig_744.g24286 Utricularia gibba HOM05D004290 ORTHO05D005025 5.8e-34 147.9 128 50.8
AUR62002942 Chenopodium quinoa HOM05D004290 ORTHO05D005025 7.6e-34 147.5 131 48.9
PGSC0003DMG400030259 Solanum tuberosum HOM05D004290 ORTHO05D005025 7.6e-34 147.5 138 44.9
Prupe.1G303100 Prunus persica HOM05D004290 ORTHO05D005025 1.7e-33 146.4 138 46.4
SalBow8G2020 Salvia bowleyana HOM05D004290 ORTHO05D005025 1.7e-33 146.4 132 48.5
CSS0026618 Camellia sinensis var. sinensis HOM05D004290 ORTHO05D005025 3.8e-33 145.2 136 47.1
ATR1147G035 Amborella trichopoda HOM05D004290 ORTHO05D005025 1.4e-32 143.3 145 49.0
Prupe.1G300800 Prunus persica HOM05D004290 ORTHO05D005025 9.3e-32 140.6 132 46.2
RcHm_v2.0_Chr4g0436151 Rosa chinensis HOM05D004290 ORTHO05D005025 9.3e-32 140.6 132 47.7
FAN22G2200 Fragaria x ananassa HOM05D004290 ORTHO05D005025 4.6e-31 138.3 204 34.3
PRCOL_00005217 Prasinoderma coloniale HOM05D004290 ORTHO05D005025 7.9e-31 137.5 138 48.6
Oeu044394.1 Olea europaea HOM05D004290 ORTHO05D005025 1.0e-30 137.1 130 48.5
MCO10G139 Micromonas commoda HOM05D004290 ORTHO05D005025 1.8e-30 136.3 132 50.0
Actinidia14836 Actinidia chinensis HOM05D000436 ORTHO05D000678 2.3e-30 136.0 111 55.9
CAN.G184.70 Capsicum annuum HOM05D004290 ORTHO05D005025 8.7e-30 134.0 113 53.1
Peaxi162Scf00367g00519 Petunia axillaris HOM05D004290 ORTHO05D005025 1.9e-29 132.9 133 47.4
Sopen03g007670 Solanum pennellii HOM05D004290 ORTHO05D005025 2.8e-28 129.0 138 42.8
FAN12G1909 Fragaria x ananassa HOM05D004290 ORTHO05D005025 1.4e-27 126.7 135 45.2
QL03p036408 Quercus lobata HOM05D004290 ORTHO05D005025 9.9e-26 120.6 93 49.5
MSTRG.13496 Avicennia marina HOM05D004290 ORTHO05D005025 4.9e-25 118.2 132 40.2
FvH4_4g28280 Fragaria vesca HOM05D004290 ORTHO05D005025 9.3e-24 114.0 135 40.7
FAN09G1140 Fragaria x ananassa HOM05D005343 ORTHO05D007153 6.0e-23 111.3 92 48.9
Peaxi162Scf00367g00520 Petunia axillaris HOM05D004290 ORTHO05D005025 1.1e-19 100.5 131 40.5
Nitab4.5_0005210g0010 Nicotiana tabacum HOM05D004290 ORTHO05D005025 6.0e-15 84.7 118 35.6
Solyc03g150121.1 Solanum lycopersicum HOM05D004290 ORTHO05D005025 1.3e-14 83.6 104 40.4
Rhsim09G0114000 Rhododendron simsii HOM05D000436 ORTHO05D000678 2.3e-14 82.8 75 49.3
MD13G1048800 Malus domestica HOM05D004290 ORTHO05D005025 6.7e-14 81.3 60 58.3
FAN02G2314 Fragaria x ananassa HOM05D004290 ORTHO05D005025 1.1e-13 80.5 63 58.7
Aqoxy3G02627 Aquilegia oxysepala HOM05D004290 ORTHO05D005025 1.9e-13 79.7 68 42.6
RcHm_v2.0_Chr2g0142061 Rosa chinensis HOM05D004290 ORTHO05D005025 7.4e-13 77.8 69 52.2
Oeu018290.1 Olea europaea HOM05D004290 ORTHO05D005025 9.0e-11 70.9 47 48.9
RcHm_v2.0_Chr2g0142051 Rosa chinensis HOM05D004290 ORTHO05D005025 5.9e-10 68.2 47 51.1
vmacro10513 Vaccinium macrocarpon HOM05D004290 ORTHO05D005025 3.8e-09 65.5 63 46.0
TAR629G2250 Trochodendron aralioides HOM05D004290 ORTHO05D005025 1.1e-08 63.9 40 50.0
Cre07.g336000 Chlamydomonas reinhardtii HOM05D065225 ORTHO05D044221 4.2e-08 62.0 143 34.3
Prupe.1G303300 Prunus persica HOM05D004290 ORTHO05D005025 9.3e-08 60.8 100 32.0
Sopen03g019130 Solanum pennellii HOM05D006181 ORTHO05D008560 2.3e-06 56.2 65 40.0
FvH4_6g51211 Fragaria vesca HOM05D004290 ORTHO05D005025 5.1e-06 55.1 38 60.5


User provided reference genes

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