Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c20_17330 Physcomitrium patens HOM05D004038 ORTHO05D004619 0.0e+00 1192.6 619 100.0
Pp3c23_11480 Physcomitrium patens HOM05D004038 ORTHO05D004619 2.6e-288 995.0 634 83.0
Pp3c24_10000 Physcomitrium patens HOM05D004038 ORTHO05D004619 1.9e-286 988.8 618 84.3
Pp3c23_5610 Physcomitrium patens HOM05D004038 ORTHO05D004619 1.9e-278 962.2 636 81.1
Mapoly0053s0086 Marchantia polymorpha HOM05D004038 ORTHO05D004619 3.1e-257 891.7 639 75.9
AagrBONN_evm.TU.Sc2ySwM_344.984 Anthoceros agrestis HOM05D004038 ORTHO05D004619 2.4e-233 812.4 516 82.9
SEGI_02142 Sequoiadendron giganteum HOM05D004038 ORTHO05D004619 2.2e-226 789.3 596 70.5
SMO361G0247 Selaginella moellendorffii HOM05D004038 ORTHO05D004619 2.1e-213 746.1 495 78.8
SMO266G0055 Selaginella moellendorffii HOM05D004038 ORTHO05D004619 1.4e-212 743.4 568 69.5
Dinv24739 Davidia involucrata HOM05D004038 ORTHO05D004619 2.2e-202 709.5 550 67.6
TAR365G0572 Trochodendron aralioides HOM05D004038 ORTHO05D004619 4.2e-201 705.3 527 69.3
GSVIVG01038267001 Vitis vinifera HOM05D004038 ORTHO05D004619 4.2e-201 705.3 565 66.5
Manes.01G009451 Manihot esculenta HOM05D004038 ORTHO05D004619 5.5e-201 704.9 527 69.1
QL10p064923 Quercus lobata HOM05D004038 ORTHO05D004619 9.3e-201 704.1 533 68.7
Aqoxy2G04186 Aquilegia oxysepala HOM05D004038 ORTHO05D004619 1.2e-200 703.7 541 67.7
Cpa.g.sc9.239 Carica papaya HOM05D004038 ORTHO05D004619 2.1e-200 703.0 569 66.1
Eucgr.A00409 Eucalyptus grandis HOM05D004038 ORTHO05D004619 7.9e-200 701.0 597 64.8
Prupe.7G271200 Prunus persica HOM05D004038 ORTHO05D004619 1.0e-199 700.7 529 68.6
MBI10_g31866_MAGBIO Magnolia biondii HOM05D004038 ORTHO05D004619 1.3e-199 700.3 570 64.7
Hma1.2p1_0513F.1_g169760 Hydrangea macrophylla HOM05D004038 ORTHO05D004619 3.0e-199 699.1 542 67.9
MBI07_g27881_MAGBIO Magnolia biondii HOM05D004038 ORTHO05D004619 3.0e-199 699.1 578 63.8
RcHm_v2.0_Chr2g0084351 Rosa chinensis HOM05D004038 ORTHO05D004619 3.0e-199 699.1 539 67.3
Atru.chr3.1959 Acer truncatum HOM05D004038 ORTHO05D004619 3.9e-199 698.7 568 65.8
TAR636G2134 Trochodendron aralioides HOM05D004038 ORTHO05D004619 3.9e-199 698.7 527 67.9
CiPaw.02G125700 Carya illinoinensis HOM05D004038 ORTHO05D004619 1.1e-198 697.2 537 67.2
Oeu061885.1 Olea europaea HOM05D004038 ORTHO05D004619 1.1e-198 697.2 545 66.4
Nitab4.5_0000348g0080 Nicotiana tabacum HOM05D004038 ORTHO05D004619 4.3e-198 695.3 527 69.3
COL.COLO4_14407 Corchorus olitorius HOM05D004038 ORTHO05D004619 7.4e-198 694.5 567 65.1
FAN28G1790 Fragaria x ananassa HOM05D004038 ORTHO05D004619 1.6e-197 693.3 527 67.9
Lj6A289T17 Lonicera japonica HOM05D004038 ORTHO05D004619 1.6e-197 693.3 539 66.8
MD15G1142000 Malus domestica HOM05D004038 ORTHO05D004619 1.6e-197 693.3 535 66.7
Cfa008534 Carpinus fangiana HOM05D004038 ORTHO05D004619 3.7e-197 692.2 527 67.9
CiPaw.01G203200 Carya illinoinensis HOM05D004038 ORTHO05D004619 3.7e-197 692.2 539 67.3
Dinv33253 Davidia involucrata HOM05D004038 ORTHO05D004619 3.7e-197 692.2 550 66.2
PSO170G2946 Papaver somniferum HOM05D004038 ORTHO05D004619 3.7e-197 692.2 544 67.1
Actinidia18385 Actinidia chinensis HOM05D004038 ORTHO05D004619 6.2e-197 691.4 527 67.9
FvH4_1g00080 Fragaria vesca HOM05D004038 ORTHO05D004619 6.2e-197 691.4 527 67.7
FAN26G0143 Fragaria x ananassa HOM05D004038 ORTHO05D004619 6.2e-197 691.4 527 67.9
Thecc.05G000500 Theobroma cacao HOM05D004038 ORTHO05D004619 6.2e-197 691.4 570 64.9
Duzib093G1419 Durio zibethinus HOM05D004038 ORTHO05D004619 8.1e-197 691.0 541 66.9
Glyma.17G000500 Glycine max HOM05D004038 ORTHO05D004619 1.4e-196 690.3 527 68.1
Peaxi162Scf01205g00162 Petunia axillaris HOM05D004038 ORTHO05D004619 1.8e-196 689.9 527 68.7
PSO357G0424 Papaver somniferum HOM05D004038 ORTHO05D004619 4.0e-196 688.7 544 66.7
Haze_11105 Corylus avellana HOM05D004038 ORTHO05D004619 6.9e-196 688.0 527 67.4
Gohir.A13G079100 Gossypium hirsutum HOM05D004038 ORTHO05D004619 6.9e-196 688.0 539 66.8
HanXRQChr01g0023591 Helianthus annuus HOM05D004038 ORTHO05D004619 6.9e-196 688.0 527 67.2
Migut.N03013 Erythranthe guttata HOM05D004038 ORTHO05D004619 9.0e-196 687.6 535 67.9
Gohir.D13G095500 Gossypium hirsutum HOM05D004038 ORTHO05D004619 9.0e-196 687.6 539 66.8
Lj4g0009662 Lotus japonicus HOM05D004038 ORTHO05D004619 1.2e-195 687.2 527 67.2
Glyma.07G273900 Glycine max HOM05D004038 ORTHO05D004619 1.5e-195 686.8 527 67.9
Ciclev10019310m.g Citrus clementina HOM05D004038 ORTHO05D004619 2.6e-195 686.0 586 63.1
Gorai.001G247600 Gossypium raimondii HOM05D004038 ORTHO05D004619 2.6e-195 686.0 539 66.6
VMungo1215G2173 Vigna mungo HOM05D004038 ORTHO05D004619 7.6e-195 684.5 527 67.7
ATR0225G045 Amborella trichopoda HOM05D004038 ORTHO05D004619 1.0e-194 684.1 528 67.2
Phvul.003G074400 Phaseolus vulgaris HOM05D004038 ORTHO05D004619 1.0e-194 684.1 618 61.2
vmacro00732 Vaccinium macrocarpon HOM05D004038 ORTHO05D004619 1.0e-194 684.1 559 63.9
Rhsim09G0001600 Rhododendron simsii HOM05D004038 ORTHO05D004619 1.3e-194 683.7 537 66.1
Sabra07G0114900 Salix brachista HOM05D004038 ORTHO05D004619 1.3e-194 683.7 539 66.4
MSTRG.22058 Avicennia marina HOM05D004038 ORTHO05D004619 2.2e-194 682.9 544 65.6
ClCG08G010220 Citrullus lanatus HOM05D004038 ORTHO05D004619 2.2e-194 682.9 527 67.6
Migut.O00491 Erythranthe guttata HOM05D004038 ORTHO05D004619 2.9e-194 682.6 535 67.7
Medtr4g134960 Medicago truncatula HOM05D004038 ORTHO05D004619 3.8e-194 682.2 527 66.2
Potri.007G146500 Populus trichocarpa HOM05D004038 ORTHO05D004619 4.9e-194 681.8 539 66.0
PGSC0003DMG400013719 Solanum tuberosum HOM05D004038 ORTHO05D004619 1.1e-193 680.6 549 66.5
CsaV3_6G032420 Cucumis sativus L. HOM05D004038 ORTHO05D004619 1.4e-193 680.2 527 67.4
Solyc08g015780.3 Solanum lycopersicum HOM05D004038 ORTHO05D004619 1.4e-193 680.2 526 67.9
Sopen08g005950 Solanum pennellii HOM05D004038 ORTHO05D004619 2.5e-193 679.5 526 67.9
MELO3C011438.2 Cucumis melo HOM05D004038 ORTHO05D004619 3.2e-193 679.1 527 67.4
MSTRG.24543 Avicennia marina HOM05D004038 ORTHO05D004619 7.1e-193 677.9 526 66.5
Ca_13541_v3 Cicer arietinum L. HOM05D004038 ORTHO05D004619 1.6e-192 676.8 527 66.2
Duzib106G0840 Durio zibethinus HOM05D004038 ORTHO05D004619 2.1e-192 676.4 572 62.9
CANSAT56G2502 Cannabis sativa HOM05D004038 ORTHO05D004619 3.5e-192 675.6 615 60.0
DCAR_023794 Daucus carota HOM05D004038 ORTHO05D004619 4.6e-192 675.2 579 62.5
Sed0003085 Sechium edule HOM05D004038 ORTHO05D004619 4.6e-192 675.2 527 67.0
CAN.G68.3 Capsicum annuum HOM05D004038 ORTHO05D004619 7.9e-192 674.5 567 64.9
Psat4g001200 Pisum sativum HOM05D004038 ORTHO05D004619 3.0e-191 672.5 556 63.3
SalBow3G0041 Salvia bowleyana HOM05D004038 ORTHO05D004619 3.9e-191 672.2 536 64.7
TWI63G0698 Tripterygium wilfordii HOM05D004038 ORTHO05D004619 5.1e-191 671.8 529 66.7
Aa31LG1G25740 Aethionema arabicum HOM05D004038 ORTHO05D004619 8.7e-191 671.0 533 65.1
Potri.017G001300 Populus trichocarpa HOM05D004038 ORTHO05D004619 8.7e-191 671.0 539 65.5
Hund12302 Selenicereus undatus HOM05D004038 ORTHO05D004619 1.9e-190 669.8 538 65.4
Nitab4.5_0012258g0010 Nicotiana tabacum HOM05D004038 ORTHO05D004619 3.3e-190 669.1 527 67.6
Nitab4.5_0008814g0010 Nicotiana tabacum HOM05D004038 ORTHO05D004619 5.7e-190 668.3 528 66.3
AUR62023688 Chenopodium quinoa HOM05D004038 ORTHO05D004619 6.3e-189 664.8 553 63.7
Lalb_Chr13g0304471 Lupinus albus HOM05D004038 ORTHO05D004619 6.3e-189 664.8 527 65.1
Nitab4.5_0000219g0020 Nicotiana tabacum HOM05D004038 ORTHO05D004619 6.3e-189 664.8 544 64.9
PGSC0003DMG402006465 Solanum tuberosum HOM05D004038 ORTHO05D004619 3.1e-188 662.5 540 65.7
Sc19g0002460 Simmondsia chinensis HOM05D004038 ORTHO05D004619 5.3e-188 661.8 526 66.2
Peaxi162Scf00057g00179 Petunia axillaris HOM05D004038 ORTHO05D004619 2.0e-187 659.8 583 60.7
AT2G44090 Arabidopsis thaliana HOM05D004038 ORTHO05D004619 2.6e-187 659.4 527 64.7
arahy.Tifrunner.gnm1.ann1.7FI9ND Arachis hypogaea HOM05D004038 ORTHO05D004619 4.5e-187 658.7 529 63.5
arahy.Tifrunner.gnm1.ann1.BTB9WU Arachis hypogaea HOM05D004038 ORTHO05D004619 4.5e-187 658.7 529 63.5
ATR0743G108 Amborella trichopoda HOM05D004038 ORTHO05D004619 7.6e-187 657.9 549 63.0
Sp4g26170 Schrenkiella parvula HOM05D004038 ORTHO05D004619 1.7e-186 656.8 535 63.7
Solyc12g017540.2 Solanum lycopersicum HOM05D004038 ORTHO05D004619 1.7e-186 656.8 556 63.8
Thhalv10001361m.g Eutrema salsugineum HOM05D004038 ORTHO05D004619 3.8e-186 655.6 535 64.5
unitig_27.g25138 Utricularia gibba HOM05D004038 ORTHO05D004619 5.0e-186 655.2 535 65.6
Sopen12g008310 Solanum pennellii HOM05D004038 ORTHO05D004619 1.9e-185 653.3 557 63.9
PGR042G1685 Punica granatum HOM05D004038 ORTHO05D004619 3.2e-185 652.5 553 61.3
THA.LOC104802352 Tarenaya hassleriana HOM05D004038 ORTHO05D004619 3.2e-185 652.5 547 63.1
BcaB02g08921 Brassica carinata HOM05D004038 ORTHO05D004619 4.2e-185 652.1 535 63.2
A09p52260 Brassica napus HOM05D004038 ORTHO05D004619 7.2e-185 651.4 495 67.1
BraA09t40655Z Brassica rapa HOM05D004038 ORTHO05D004619 7.2e-185 651.4 495 67.1
Migut.G00797 Erythranthe guttata HOM05D004038 ORTHO05D004619 7.2e-185 651.4 537 63.9
Carub.0005s2665 Capsella rubella HOM05D004038 ORTHO05D004619 1.2e-184 650.6 523 64.8
Sp5g03260 Schrenkiella parvula HOM05D004038 ORTHO05D004619 1.0e-183 647.5 495 66.9
Ah.07g203340 Amaranthus hybridus HOM05D004038 ORTHO05D004619 1.8e-183 646.7 550 62.2
CARHR170240 Cardamine hirsuta HOM05D004038 ORTHO05D004619 3.0e-183 646.0 496 66.7
Cc03_g15890 Coffea canephora HOM05D004038 ORTHO05D004619 3.0e-183 646.0 529 63.5
C04p04970 Brassica napus HOM05D004038 ORTHO05D004619 3.9e-183 645.6 528 63.4
Thhalv10005846m.g Eutrema salsugineum HOM05D004038 ORTHO05D004619 8.7e-183 644.4 495 66.5
BcaC02g12341 Brassica carinata HOM05D004038 ORTHO05D004619 1.9e-182 643.3 526 63.5
A05p04210 Brassica napus HOM05D004038 ORTHO05D004619 1.9e-182 643.3 536 62.9
BolC4t22128H Brassica oleracea HOM05D004038 ORTHO05D004619 1.9e-182 643.3 526 63.5
Aa31LG10G14160 Aethionema arabicum HOM05D004038 ORTHO05D004619 3.3e-182 642.5 524 63.9
BraA05t19406Z Brassica rapa HOM05D004038 ORTHO05D004619 3.3e-182 642.5 536 62.9
AT3G59910 Arabidopsis thaliana HOM05D004038 ORTHO05D004619 4.3e-182 642.1 495 66.5
C08p34910 Brassica napus HOM05D004038 ORTHO05D004619 5.7e-182 641.7 495 66.1
AL5G42070 Arabidopsis lyrata HOM05D004038 ORTHO05D004619 9.7e-182 641.0 495 66.3
BcaC07g40397 Brassica carinata HOM05D004038 ORTHO05D004619 1.3e-181 640.6 495 66.1
Nn7g37426 Nelumbo nucifera HOM05D004038 ORTHO05D004619 2.8e-181 639.4 534 64.0
BcaC07g40545 Brassica carinata HOM05D004038 ORTHO05D004619 1.4e-180 637.1 495 65.5
BolC8t51093H Brassica oleracea HOM05D004038 ORTHO05D004619 1.4e-180 637.1 495 65.5
EL10Ac3g06184 Beta vulgaris HOM05D004038 ORTHO05D004619 6.9e-180 634.8 605 57.9
Os11g0246900 Oryza sativa ssp. japonica HOM05D004038 ORTHO05D004619 8.5e-178 627.9 531 63.1
CDE09G0082 Ceratophyllum demersum HOM05D004038 ORTHO05D004619 1.0e-175 620.9 532 60.5
TPR.G5970 Trifolium pratense HOM05D004038 ORTHO05D004619 1.8e-175 620.2 448 69.4
Zm00001eb168270 Zea mays HOM05D004038 ORTHO05D004619 1.8e-175 620.2 530 61.5
Ah.13g073130 Amaranthus hybridus HOM05D004038 ORTHO05D004619 2.6e-174 616.3 622 56.3
AL4G42970 Arabidopsis lyrata HOM05D004038 ORTHO05D004619 4.4e-174 615.5 553 59.9
AUR62002499 Chenopodium quinoa HOM05D004038 ORTHO05D004619 1.3e-173 614.0 544 60.5
SGA_v2.0_scaffold19G08904 Striga asiatica HOM05D004038 ORTHO05D004619 2.2e-173 613.2 486 66.9
BcaC02g07135 Brassica carinata HOM05D004038 ORTHO05D004619 6.9e-172 608.2 542 59.6
Lsat_1_v5_gn_1_77161 Lactuca sativa HOM05D004038 ORTHO05D004619 2.0e-171 606.7 527 62.6
CDE08G0097 Ceratophyllum demersum HOM05D004038 ORTHO05D004619 5.9e-171 605.1 582 57.7
HPP92_001964 Vanilla planifolia HOM05D004038 ORTHO05D004619 1.7e-170 603.6 539 59.2
Rhsim09G0010000 Rhododendron simsii HOM05D004038 ORTHO05D004619 9.4e-169 597.8 606 55.8
MD02G1000800 Malus domestica HOM05D004038 ORTHO05D004619 1.6e-168 597.0 538 60.0
HPP92_004656 Vanilla planifolia HOM05D004038 ORTHO05D004619 4.5e-163 578.9 550 58.2
Cc03_g15910 Coffea canephora HOM05D004038 ORTHO05D004619 6.3e-157 558.5 433 66.7
ECA248G0282 Erigeron canadensis HOM05D004038 ORTHO05D004619 1.0e-154 551.2 526 58.2
FAN23G2340 Fragaria x ananassa HOM05D004038 ORTHO05D004619 7.2e-153 545.0 421 66.5
SalBow6G2055 Salvia bowleyana HOM05D004038 ORTHO05D004619 2.3e-151 540.0 428 65.4
Oeu050303.2 Olea europaea HOM05D004038 ORTHO05D004619 4.4e-150 535.8 425 65.4
Zm00001eb244150 Zea mays HOM05D004038 ORTHO05D004619 9.2e-140 501.5 527 49.7
Actinidia34559 Actinidia chinensis HOM05D004038 ORTHO05D004619 3.2e-132 476.5 377 66.8
Os02g0562400 Oryza sativa ssp. japonica HOM05D004038 ORTHO05D004619 4.1e-132 476.1 495 50.5
CARHR139240 Cardamine hirsuta HOM05D004038 ORTHO05D004619 4.4e-126 456.1 391 60.4
MD01G1124800 Malus domestica HOM05D004038 ORTHO05D004619 2.1e-115 420.6 526 47.7
CDE02G2909 Ceratophyllum demersum HOM05D004038 ORTHO05D004619 5.8e-102 375.9 469 49.9
Nn1g09401 Nelumbo nucifera HOM05D004038 ORTHO05D004619 5.4e-100 369.4 281 68.3
FAN23G0195 Fragaria x ananassa HOM05D004038 ORTHO05D004619 1.4e-95 354.8 268 69.4
Carub.0004s2664 Capsella rubella HOM05D004038 ORTHO05D004619 2.4e-87 327.4 248 67.7
BcaB02g10668 Brassica carinata HOM05D004038 ORTHO05D004619 1.2e-59 235.3 154 74.7
PGSC0003DMG401006465 Solanum tuberosum HOM05D004038 ORTHO05D004619 2.7e-59 234.2 165 73.9
C04p70890 Brassica napus HOM05D000190 ORTHO05D000113 3.6e-35 154.1 197 44.7
BolC4t28590H Brassica oleracea HOM05D000190 ORTHO05D000113 3.0e-34 151.0 197 43.7
A04p33200 Brassica napus HOM05D000190 ORTHO05D000113 4.0e-34 150.6 163 50.9
BraA04t18779Z Brassica rapa HOM05D000190 ORTHO05D000113 2.6e-33 147.9 163 50.3
FvH4_6g21450 Fragaria vesca HOM05D004038 ORTHO05D004619 2.8e-32 144.4 98 70.4
Oeu038224.1 Olea europaea HOM05D003383 ORTHO05D003890 1.7e-29 135.2 131 54.2
ATR1120G077 Amborella trichopoda HOM05D004884 ORTHO05D005873 2.4e-23 114.8 97 62.9
CBR_g40501 Chara braunii HOM05D004038 ORTHO05D004619 9.2e-23 112.8 150 40.7
Pp3c10_11360 Physcomitrium patens HOM05D004038 ORTHO05D004619 1.5e-20 105.5 225 36.0
ATR0115G008 Amborella trichopoda HOM05D004038 ORTHO05D004619 3.3e-20 104.4 101 57.4
Pp3c1_34260 Physcomitrium patens HOM05D004038 ORTHO05D004619 2.1e-19 101.7 314 27.1
Pp3c14_7650 Physcomitrium patens HOM05D004038 ORTHO05D004619 6.1e-19 100.1 311 29.6
FvH4_5g21451 Fragaria vesca HOM05D004038 ORTHO05D004619 1.3e-16 92.4 133 42.9
Pp3c1_7290 Physcomitrium patens HOM05D004038 ORTHO05D004619 9.2e-15 86.3 214 32.2
Oeu023156.1 Olea europaea HOM05D004038 ORTHO05D004619 7.3e-12 76.6 123 39.8
SGA_v2.0_scaffold158G37520 Striga asiatica HOM05D004038 ORTHO05D004619 4.7e-11 73.9 86 45.3
SGA_v2.0_scaffold18G08543 Striga asiatica HOM05D004038 ORTHO05D004619 8.9e-10 69.7 109 41.3
SGA_v2.0_scaffold10G05092 Striga asiatica HOM05D020555 ORTHO05D004619 5.8e-09 67.0 70 60.0
ATR0665G114 Amborella trichopoda HOM05D004038 ORTHO05D004619 1.3e-08 65.9 66 60.6
ATR0624G069 Amborella trichopoda HOM05D004038 ORTHO05D004619 2.2e-08 65.1 71 50.7
SEGI_20459 Sequoiadendron giganteum HOM05D004038 ORTHO05D004619 6.4e-08 63.5 159 33.3


User provided reference genes

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