Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c20_16850 Physcomitrium patens HOM05D004937 ORTHO05D006414 0.0e+00 1213.7 605 100.0
Mapoly0028s0073 Marchantia polymorpha HOM05D004937 ORTHO05D006414 3.2e-113 413.3 561 43.5
SEGI_33731 Sequoiadendron giganteum HOM05D004937 ORTHO05D006414 3.8e-106 389.8 278 61.2
Aqoxy1G02086 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 2.4e-100 370.5 263 63.1
Manes.16G005800 Manihot esculenta HOM05D004937 ORTHO05D006414 4.1e-100 369.8 284 60.9
PSO541G5924 Papaver somniferum HOM05D004937 ORTHO05D006414 5.9e-99 365.9 314 57.3
Nn1g07169 Nelumbo nucifera HOM05D004937 ORTHO05D006414 1.7e-98 364.4 268 61.9
vmacro15793 Vaccinium macrocarpon HOM05D004937 ORTHO05D006414 1.7e-98 364.4 277 61.0
GSVIVG01012711001 Vitis vinifera HOM05D004937 ORTHO05D000904 1.7e-98 364.4 282 59.6
Cpa.g.sc152.26 Carica papaya HOM05D004937 ORTHO05D006414 3.8e-98 363.2 265 62.6
MELO3C002448.2 Cucumis melo HOM05D004937 ORTHO05D006414 5.0e-98 362.8 303 57.1
Rhsim02G0106300 Rhododendron simsii HOM05D004937 ORTHO05D006414 5.0e-98 362.8 326 54.6
Phvul.003G080000 Phaseolus vulgaris HOM05D004937 ORTHO05D006414 6.5e-98 362.5 277 59.2
PSO675G1521 Papaver somniferum HOM05D004937 ORTHO05D006414 1.1e-97 361.7 314 56.7
TAR624G0274 Trochodendron aralioides HOM05D004937 ORTHO05D006414 1.1e-97 361.7 313 56.5
SMO361G0593 Selaginella moellendorffii HOM05D004937 ORTHO05D006414 2.5e-97 360.5 268 60.4
CiPaw.09G093200 Carya illinoinensis HOM05D004937 ORTHO05D006414 5.5e-97 359.4 269 61.0
Ciclev10014440m.g Citrus clementina HOM05D004937 ORTHO05D006414 9.4e-97 358.6 269 61.0
Haze_06813 Corylus avellana HOM05D004937 ORTHO05D006414 1.6e-96 357.8 271 59.4
QL05p072835 Quercus lobata HOM05D004937 ORTHO05D006414 2.7e-96 357.1 268 60.1
Sabra04G0005400 Salix brachista HOM05D004937 ORTHO05D006414 2.7e-96 357.1 264 62.1
HPP92_001591 Vanilla planifolia HOM05D004937 ORTHO05D006414 2.7e-96 357.1 266 60.9
Gohir.A06G207300 Gossypium hirsutum HOM05D004937 ORTHO05D006414 3.6e-96 356.7 281 57.7
Gohir.D06G214000 Gossypium hirsutum HOM05D004937 ORTHO05D006414 4.7e-96 356.3 269 60.2
Gorai.010G252100 Gossypium raimondii HOM05D004937 ORTHO05D006414 4.7e-96 356.3 269 60.2
HPP92_001597 Vanilla planifolia HOM05D004937 ORTHO05D006414 6.1e-96 355.9 266 60.2
VMungo1215G2760 Vigna mungo HOM05D004937 ORTHO05D006414 6.1e-96 355.9 266 59.0
CsaV3_1G010670 Cucumis sativus L. HOM05D004937 ORTHO05D006414 1.0e-95 355.1 264 62.5
FvH4_3g01860 Fragaria vesca HOM05D004937 ORTHO05D006414 1.4e-95 354.8 266 61.3
Potri.004G010400 Populus trichocarpa HOM05D004937 ORTHO05D006414 1.4e-95 354.8 264 61.4
MSTRG.15996 Avicennia marina HOM05D004937 ORTHO05D006414 1.8e-95 354.4 266 61.3
DCAR_024931 Daucus carota HOM05D004937 ORTHO05D006414 5.1e-95 352.8 272 60.3
Sed0026378 Sechium edule HOM05D004937 ORTHO05D006414 6.7e-95 352.4 328 54.3
CSS0033735 Camellia sinensis var. sinensis HOM05D004937 ORTHO05D006414 8.8e-95 352.1 266 61.7
CARHR012140 Cardamine hirsuta HOM05D004937 ORTHO05D006414 8.8e-95 352.1 328 54.3
COL.COLO4_31792 Corchorus olitorius HOM05D004937 ORTHO05D006414 1.5e-94 351.3 266 61.3
Hund23457 Selenicereus undatus HOM05D004937 ORTHO05D006414 1.5e-94 351.3 545 38.5
TWI63G0901 Tripterygium wilfordii HOM05D004937 ORTHO05D006414 1.5e-94 351.3 268 60.4
PSO675G7903 Papaver somniferum HOM05D004937 ORTHO05D006414 2.0e-94 350.9 484 43.2
Medtr4g132300 Medicago truncatula HOM05D004937 ORTHO05D006414 2.6e-94 350.5 271 58.7
ATR0794G089 Amborella trichopoda HOM05D004937 ORTHO05D006414 3.3e-94 350.1 268 59.3
FAN21G0664 Fragaria x ananassa HOM05D004937 ORTHO05D006414 5.7e-94 349.4 266 60.5
PSO541G2704 Papaver somniferum HOM05D004937 ORTHO05D006414 5.7e-94 349.4 481 42.4
Lalb_Chr12g0196051 Lupinus albus HOM05D004937 ORTHO05D006414 9.7e-94 348.6 303 53.5
RcHm_v2.0_Chr5g0002731 Rosa chinensis HOM05D004937 ORTHO05D006414 9.7e-94 348.6 523 41.9
Thhalv10006713m.g Eutrema salsugineum HOM05D004937 ORTHO05D000904 1.3e-93 348.2 332 53.6
Lj1A1232T94 Lonicera japonica HOM05D004937 ORTHO05D006414 1.3e-93 348.2 266 62.0
arahy.Tifrunner.gnm1.ann1.L1792D Arachis hypogaea HOM05D004937 ORTHO05D006414 1.7e-93 347.8 308 53.9
Cc09_g01540 Coffea canephora HOM05D004937 ORTHO05D000904 1.7e-93 347.8 296 55.1
Thecc.06G222700 Theobroma cacao HOM05D004937 ORTHO05D006414 1.7e-93 347.8 268 59.3
AL1G22990 Arabidopsis lyrata HOM05D004937 ORTHO05D006414 3.7e-93 346.7 332 53.3
Aa31LG1G2970 Aethionema arabicum HOM05D004937 ORTHO05D006414 4.8e-93 346.3 269 58.4
Glyma.17G012400 Glycine max HOM05D004937 ORTHO05D006414 4.8e-93 346.3 264 58.3
Glyma.07G261700 Glycine max HOM05D004937 ORTHO05D006414 6.3e-93 345.9 264 58.0
Sc24g0000210 Simmondsia chinensis HOM05D004937 ORTHO05D006414 1.4e-92 344.7 547 39.3
DCAR_028195 Daucus carota HOM05D004937 ORTHO05D006414 2.4e-92 344.0 280 56.8
Lj4g0022599 Lotus japonicus HOM05D004937 ORTHO05D006414 2.4e-92 344.0 262 59.2
PSO017G1772 Papaver somniferum HOM05D004937 ORTHO05D006414 2.4e-92 344.0 302 56.3
Eucgr.D01342 Eucalyptus grandis HOM05D004937 ORTHO05D006414 3.1e-92 343.6 264 60.2
THA.LOC104809500 Tarenaya hassleriana HOM05D004937 ORTHO05D006414 3.1e-92 343.6 289 55.7
TPR.G22185 Trifolium pratense HOM05D004937 ORTHO05D006414 3.1e-92 343.6 271 58.7
AT1G11800 Arabidopsis thaliana HOM05D004937 ORTHO05D006414 4.1e-92 343.2 328 53.7
Psat4g006200 Pisum sativum HOM05D004937 ORTHO05D006414 4.1e-92 343.2 314 52.2
AagrBONN_evm.TU.Sc2ySwM_368.2060 Anthoceros agrestis HOM05D004937 ORTHO05D006414 5.3e-92 342.8 247 62.8
Migut.M01330 Erythranthe guttata HOM05D004937 ORTHO05D000904 5.3e-92 342.8 264 59.5
MD10G1323300 Malus domestica HOM05D004937 ORTHO05D006414 9.1e-92 342.0 519 40.3
PGR042G1615 Punica granatum HOM05D004937 ORTHO05D006414 9.1e-92 342.0 270 59.6
CANSAT56G3877 Cannabis sativa HOM05D004937 ORTHO05D006414 1.2e-91 341.7 266 57.9
BcaB08g37429 Brassica carinata HOM05D004937 ORTHO05D006414 1.5e-91 341.3 290 55.5
Carub.0001s1147 Capsella rubella HOM05D004937 ORTHO05D006414 2.9e-90 337.0 332 51.8
AUR62021933 Chenopodium quinoa HOM05D004937 ORTHO05D006414 2.9e-90 337.0 536 40.5
Prupe.4G019000 Prunus persica HOM05D004937 ORTHO05D006414 2.9e-90 337.0 266 59.0
AUR62012723 Chenopodium quinoa HOM05D004937 ORTHO05D006414 8.5e-90 335.5 281 55.9
unitig_748.g7590 Utricularia gibba HOM05D004937 ORTHO05D006414 1.1e-89 335.1 478 40.8
Zm00001eb043220 Zea mays HOM05D004937 ORTHO05D006414 1.1e-89 335.1 265 56.6
EL10Ac8g20076 Beta vulgaris HOM05D004937 ORTHO05D006414 1.4e-89 334.7 557 38.2
Peaxi162Scf00394g00019 Petunia axillaris HOM05D004937 ORTHO05D006414 1.9e-89 334.3 266 58.6
arahy.Tifrunner.gnm1.ann1.VWCB5J Arachis hypogaea HOM05D004937 ORTHO05D006414 2.5e-89 334.0 308 53.2
BraA09t41776Z Brassica rapa HOM05D004937 ORTHO05D006414 2.5e-89 334.0 264 58.3
C08p47960 Brassica napus HOM05D004937 ORTHO05D006414 5.5e-89 332.8 264 58.0
BolC8t52333H Brassica oleracea HOM05D004937 ORTHO05D006414 5.5e-89 332.8 264 58.0
Os12g0414900 Oryza sativa ssp. japonica HOM05D004937 ORTHO05D006414 9.4e-89 332.0 504 36.9
Peaxi162Scf00307g01425 Petunia axillaris HOM05D004937 ORTHO05D006414 1.2e-88 331.6 266 58.6
BcaC07g41758 Brassica carinata HOM05D004937 ORTHO05D006414 1.6e-88 331.3 273 56.4
CBR_g38366 Chara braunii HOM05D004937 ORTHO05D006414 2.7e-88 330.5 310 52.6
SalBow8G2768 Salvia bowleyana HOM05D004937 ORTHO05D006414 2.7e-88 330.5 527 39.7
Nitab4.5_0000005g0300 Nicotiana tabacum HOM05D004937 ORTHO05D006414 4.7e-88 329.7 266 57.1
Nitab4.5_0011734g0010 Nicotiana tabacum HOM05D004937 ORTHO05D006414 4.7e-88 329.7 349 48.1
Sp1g10430 Schrenkiella parvula HOM05D004937 ORTHO05D006414 1.4e-87 328.2 330 50.9
Haze_06812 Corylus avellana HOM05D004937 ORTHO05D006414 1.8e-87 327.8 264 57.2
QL05p072858 Quercus lobata HOM05D004937 ORTHO05D006414 1.8e-87 327.8 319 53.0
ECA236G0630 Erigeron canadensis HOM05D004937 ORTHO05D006414 6.7e-87 325.9 319 53.0
A09p64340 Brassica napus HOM05D004937 ORTHO05D007797 8.8e-87 325.5 268 56.0
HanXRQChr15g0470651 Helianthus annuus HOM05D004937 ORTHO05D006414 1.1e-86 325.1 266 57.9
Ca_21076_v3 Cicer arietinum L. HOM05D004937 ORTHO05D006414 3.3e-86 323.6 253 58.9
Solyc02g032870.4 Solanum lycopersicum HOM05D004937 ORTHO05D006414 2.8e-85 320.5 266 55.6
PGSC0003DMG400019871 Solanum tuberosum HOM05D004937 ORTHO05D006414 2.8e-85 320.5 266 55.6
Lsat_1_v5_gn_7_16360 Lactuca sativa HOM05D004937 ORTHO05D006414 9.1e-84 315.5 267 56.6
Sopen02g011270 Solanum pennellii HOM05D004937 ORTHO05D006414 1.2e-83 315.1 475 40.8
Dinv20060 Davidia involucrata HOM05D004937 ORTHO05D006414 1.6e-83 314.7 274 55.5
HanXRQChr05g0129391 Helianthus annuus HOM05D004937 ORTHO05D006414 1.3e-82 311.6 272 57.4
Sed0013617 Sechium edule HOM05D004937 ORTHO05D006414 7.2e-81 305.8 229 62.0
QL05p072840 Quercus lobata HOM05D004937 ORTHO05D006414 1.6e-80 304.7 332 47.9
CDE02G2441 Ceratophyllum demersum HOM05D004937 ORTHO05D006414 4.7e-80 303.1 269 53.5
Hma1.2p1_3370F.1_g335650 Hydrangea macrophylla HOM05D004937 ORTHO05D006414 1.4e-79 301.6 254 56.7
HPP92_014181 Vanilla planifolia HOM05D004937 ORTHO05D006414 1.8e-79 301.2 366 45.1
Dinv13907 Davidia involucrata HOM05D004937 ORTHO05D006414 1.5e-78 298.1 360 44.2
Potri.004G010900 Populus trichocarpa HOM05D004937 ORTHO05D006414 2.6e-78 297.4 267 54.7
Ah.14g087960 Amaranthus hybridus HOM05D004937 ORTHO05D006414 4.8e-77 293.1 535 36.4
ClCG03G004640 Citrullus lanatus HOM05D004937 ORTHO05D006414 1.2e-72 278.5 193 67.4
SHI02217 Sapria himalayana HOM05D004937 ORTHO05D006414 1.5e-70 271.6 346 43.1
Aqoxy3G03726 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 7.7e-67 259.2 269 47.2
Aqoxy4G00762 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 8.6e-66 255.8 269 46.5
Migut.M01331 Erythranthe guttata HOM05D004937 ORTHO05D006414 1.6e-64 251.5 266 48.1
Zm00001eb048580 Zea mays HOM05D004937 ORTHO05D006414 4.9e-61 240.0 179 60.3
CSS0005056 Camellia sinensis var. sinensis HOM05D004937 ORTHO05D006414 3.1e-60 237.3 173 63.6
Aqoxy5G03390 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 2.2e-53 214.5 217 47.5
Mapoly0074s0008 Marchantia polymorpha HOM05D004937 ORTHO05D006414 4.1e-52 210.3 255 45.5
CSS0029720 Camellia sinensis var. sinensis HOM05D004937 ORTHO05D006414 8.6e-50 202.6 276 42.4
CSS0048087 Camellia sinensis var. sinensis HOM05D004937 ORTHO05D006414 1.7e-45 188.3 276 39.1
BcaB08g37427 Brassica carinata HOM05D004937 ORTHO05D006414 6.4e-45 186.4 175 53.1
MCO11G820 Micromonas commoda HOM05D004937 ORTHO05D006414 1.6e-43 181.8 299 37.5
PRCOL_00004553 Prasinoderma coloniale HOM05D004937 ORTHO05D006414 6.0e-43 179.9 372 33.9
Cre06.g305050 Chlamydomonas reinhardtii HOM05D004937 ORTHO05D006414 4.3e-41 173.7 289 37.0
QL05p072848 Quercus lobata HOM05D004937 ORTHO05D006414 1.2e-40 172.2 134 59.0
Dinv13906 Davidia involucrata HOM05D004937 ORTHO05D006414 4.7e-40 170.2 266 36.8
BcaB08g37425 Brassica carinata HOM05D004937 ORTHO05D006414 6.2e-40 169.9 133 60.2
Psat6g178560 Pisum sativum HOM05D004937 ORTHO05D006414 7.3e-33 146.4 137 50.4
AagrBONN_evm.TU.Sc2ySwM_368.2061 Anthoceros agrestis HOM05D004937 ORTHO05D006414 5.2e-31 140.2 121 52.9
Dinv13905 Davidia involucrata HOM05D004937 ORTHO05D006414 1.2e-30 139.0 97 64.9
Aqoxy3G02634 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 1.4e-28 132.1 150 43.3
PRCOL_00006577 Prasinoderma coloniale HOM05D004937 ORTHO05D006414 6.6e-26 123.2 293 30.7
Cre06.g305250 Chlamydomonas reinhardtii HOM05D004937 ORTHO05D006414 8.1e-24 116.3 284 30.6
Lj2C267G4 Lonicera japonica HOM05D004937 ORTHO05D006414 8.1e-24 116.3 100 59.0
PGSC0003DMG400026496 Solanum tuberosum HOM05D004937 ORTHO05D006414 4.6e-19 100.5 74 62.2
ClCG03G004650 Citrullus lanatus HOM05D000020 ORTHO05D000904 1.6e-16 92.0 79 53.2
BcaB08g37428 Brassica carinata HOM05D004937 ORTHO05D006414 1.1e-15 89.4 94 45.7
Dinv13904 Davidia involucrata HOM05D004937 ORTHO05D006414 1.5e-14 85.5 62 56.5
Os07g0510800 Oryza sativa ssp. japonica HOM05D004937 ORTHO05D006414 1.8e-07 62.0 62 51.6
Os10g0401100 Oryza sativa ssp. japonica HOM05D004937 ORTHO05D006414 2.0e-06 58.5 49 49.0
Dinv30719 Davidia involucrata HOM05D004937 ORTHO05D006414 9.9e-06 56.2 66 36.4


User provided reference genes

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