Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c20_1670 Physcomitrium patens HOM05D005420 ORTHO05D006524 2.2e-91 339.0 172 100.0
Pp3c24_16460 Physcomitrium patens HOM05D005420 ORTHO05D006524 2.1e-57 226.1 195 63.1
Pp3c8_21410 Physcomitrium patens HOM05D005420 ORTHO05D006524 6.9e-53 211.1 191 58.6
Mapoly0136s0029 Marchantia polymorpha HOM05D005420 ORTHO05D006524 2.6e-44 182.6 190 51.1
SMO367G0538 Selaginella moellendorffii HOM05D005420 ORTHO05D006524 3.7e-38 162.2 160 56.9
CSS0017727 Camellia sinensis var. sinensis HOM05D005420 ORTHO05D006524 3.8e-35 152.1 189 47.6
CSS0022736 Camellia sinensis var. sinensis HOM05D005420 ORTHO05D006524 3.8e-35 152.1 189 47.6
SEGI_26827 Sequoiadendron giganteum HOM05D005420 ORTHO05D006524 8.4e-35 151.0 164 51.8
Lsat_1_v5_gn_1_76981 Lactuca sativa HOM05D005420 ORTHO05D006524 1.1e-34 150.6 161 52.2
HanXRQChr11g0343501 Helianthus annuus HOM05D005420 ORTHO05D006524 1.4e-34 150.2 175 49.7
ATR0743G098 Amborella trichopoda HOM05D005420 ORTHO05D006524 1.9e-34 149.8 159 52.8
MSTRG.24552 Avicennia marina HOM05D005420 ORTHO05D006524 2.5e-34 149.4 189 47.6
HanXRQChr01g0023651 Helianthus annuus HOM05D005420 ORTHO05D006524 3.2e-34 149.1 161 52.2
Sed0010932 Sechium edule HOM05D005420 ORTHO05D006524 3.2e-34 149.1 192 46.9
MBI07_g10354_MAGBIO Magnolia biondii HOM05D005420 ORTHO05D006524 4.2e-34 148.7 158 53.8
QL10p064332 Quercus lobata HOM05D005420 ORTHO05D006524 5.5e-34 148.3 160 50.0
Zm00001eb159810 Zea mays HOM05D005420 ORTHO05D006524 5.5e-34 148.3 193 47.7
arahy.Tifrunner.gnm1.ann1.D6NWCJ Arachis hypogaea HOM05D005420 ORTHO05D006524 9.3e-34 147.5 160 51.2
arahy.Tifrunner.gnm1.ann1.EMGW5K Arachis hypogaea HOM05D005420 ORTHO05D006524 9.3e-34 147.5 160 51.2
FAN23G1410 Fragaria x ananassa HOM05D005420 ORTHO05D006524 9.3e-34 147.5 159 49.1
TPR.G6015 Trifolium pratense HOM05D005420 ORTHO05D006524 9.3e-34 147.5 159 52.8
TAR636G0539 Trochodendron aralioides HOM05D005420 ORTHO05D006524 9.3e-34 147.5 158 52.5
VMungo1215G3385 Vigna mungo HOM05D005420 ORTHO05D006524 9.3e-34 147.5 158 51.9
Nitab4.5_0008205g0010 Nicotiana tabacum HOM05D005420 ORTHO05D006524 1.2e-33 147.1 188 46.3
Atru.chr12.1712 Acer truncatum HOM05D005420 ORTHO05D006524 2.1e-33 146.4 160 50.6
Os01g0338600 Oryza sativa ssp. japonica HOM05D005420 ORTHO05D006524 2.1e-33 146.4 160 53.1
Potri.013G084300 Populus trichocarpa HOM05D005420 ORTHO05D006524 2.1e-33 146.4 160 50.0
CiPaw.02G124600 Carya illinoinensis HOM05D005420 ORTHO05D006524 2.7e-33 146.0 160 50.6
Ciclev10012405m.g Citrus clementina HOM05D005420 ORTHO05D006524 2.7e-33 146.0 160 50.6
Manes.12G003300 Manihot esculenta HOM05D005420 ORTHO05D006524 2.7e-33 146.0 160 50.0
CiPaw.01G201600 Carya illinoinensis HOM05D005420 ORTHO05D006524 3.5e-33 145.6 160 50.0
CsaV3_7G022350 Cucumis sativus L. HOM05D005420 ORTHO05D006524 3.5e-33 145.6 187 44.4
Glyma.07G273700 Glycine max HOM05D005420 ORTHO05D006524 3.5e-33 145.6 158 51.3
Glyma.17G000800 Glycine max HOM05D005420 ORTHO05D006524 3.5e-33 145.6 158 51.3
Sabra13G0078900 Salix brachista HOM05D005420 ORTHO05D006524 3.5e-33 145.6 160 50.6
unitig_27.g25143 Utricularia gibba HOM05D005420 ORTHO05D006524 3.5e-33 145.6 182 47.3
Cfa008513 Carpinus fangiana HOM05D005420 ORTHO05D006524 4.6e-33 145.2 160 50.0
ClCG09G014850 Citrullus lanatus HOM05D005420 ORTHO05D006524 4.6e-33 145.2 160 50.0
Ah.07g203200 Amaranthus hybridus HOM05D005420 ORTHO05D006524 6.0e-33 144.8 160 50.0
CDE09G0694 Ceratophyllum demersum HOM05D005420 ORTHO05D006524 6.0e-33 144.8 158 52.5
PGR119G0486 Punica granatum HOM05D005420 ORTHO05D006524 6.0e-33 144.8 160 50.6
TAR365G1242 Trochodendron aralioides HOM05D005420 ORTHO05D006524 6.0e-33 144.8 180 48.3
CANSAT56G1087 Cannabis sativa HOM05D005420 ORTHO05D006524 7.9e-33 144.4 158 51.3
Dinv33245 Davidia involucrata HOM05D005420 ORTHO05D006524 7.9e-33 144.4 177 48.6
TWI36G0345 Tripterygium wilfordii HOM05D005420 ORTHO05D006524 7.9e-33 144.4 164 50.0
TWI36G1305 Tripterygium wilfordii HOM05D005420 ORTHO05D006524 7.9e-33 144.4 164 50.0
Aqoxy1G01859 Aquilegia oxysepala HOM05D005420 ORTHO05D006524 1.0e-32 144.1 160 50.6
Cc03_g15990 Coffea canephora HOM05D005420 ORTHO05D006524 1.0e-32 144.1 158 50.0
Lj6C285T2 Lonicera japonica HOM05D005420 ORTHO05D006524 1.0e-32 144.1 158 51.3
Solyc08g015620.3 Solanum lycopersicum HOM05D005420 ORTHO05D006524 1.0e-32 144.1 190 44.7
Sopen08g005610 Solanum pennellii HOM05D005420 ORTHO05D006524 1.0e-32 144.1 190 44.7
FvH4_1g00160 Fragaria vesca HOM05D005420 ORTHO05D006524 1.3e-32 143.7 160 49.4
FAN28G0609 Fragaria x ananassa HOM05D005420 ORTHO05D006524 1.3e-32 143.7 160 49.4
Prupe.7G269700 Prunus persica HOM05D005420 ORTHO05D006524 1.3e-32 143.7 182 45.6
vmacro00721 Vaccinium macrocarpon HOM05D005420 ORTHO05D006524 1.3e-32 143.7 191 46.1
Eucgr.H01455 Eucalyptus grandis HOM05D005420 ORTHO05D006524 1.8e-32 143.3 160 50.0
RcHm_v2.0_Chr2g0084451 Rosa chinensis HOM05D005420 ORTHO05D006524 1.8e-32 143.3 160 49.4
DCAR_005460 Daucus carota HOM05D005420 ORTHO05D006524 2.3e-32 142.9 160 50.0
Rhsim09G0003700 Rhododendron simsii HOM05D005420 ORTHO05D006524 2.3e-32 142.9 188 47.9
C04p04880 Brassica napus HOM05D005420 ORTHO05D006524 3.0e-32 142.5 189 45.0
Lj4g0016379 Lotus japonicus HOM05D005420 ORTHO05D006524 3.0e-32 142.5 160 50.6
Nitab4.5_0000013g0040 Nicotiana tabacum HOM05D005420 ORTHO05D006524 3.0e-32 142.5 188 45.2
SGA_v2.0_scaffold12G06218 Striga asiatica HOM05D005420 ORTHO05D006524 3.0e-32 142.5 164 48.8
unitig_699.g19464 Utricularia gibba HOM05D005420 ORTHO05D006524 3.0e-32 142.5 157 50.3
BraA05t19397Z Brassica rapa HOM05D005420 ORTHO05D006524 5.1e-32 141.7 189 44.4
Nn7g37463 Nelumbo nucifera HOM05D005420 ORTHO05D006524 5.1e-32 141.7 175 46.9
PSO675G2924 Papaver somniferum HOM05D005420 ORTHO05D006524 5.1e-32 141.7 161 50.9
PSO732G0217 Papaver somniferum HOM05D005420 ORTHO05D006524 5.1e-32 141.7 161 50.9
Peaxi162Scf01205g00032 Petunia axillaris HOM05D005420 ORTHO05D006524 5.1e-32 141.7 190 45.3
THA.LOC104802345 Tarenaya hassleriana HOM05D005420 ORTHO05D006524 5.1e-32 141.7 160 50.0
HPP92_024700 Vanilla planifolia HOM05D005420 ORTHO05D006524 5.1e-32 141.7 160 51.2
EL10Ac3g06165 Beta vulgaris HOM05D005420 ORTHO05D006524 6.7e-32 141.4 160 48.8
BcaB02g08884 Brassica carinata HOM05D005420 ORTHO05D006524 6.7e-32 141.4 160 49.4
ECA248G1232 Erigeron canadensis HOM05D005420 ORTHO05D006524 6.7e-32 141.4 161 49.7
MD15G1143300 Malus domestica HOM05D005420 ORTHO05D006524 6.7e-32 141.4 160 49.4
Phvul.003G074600 Phaseolus vulgaris HOM05D005420 ORTHO05D006524 6.7e-32 141.4 158 50.6
GSVIVG01038249001 Vitis vinifera HOM05D005420 ORTHO05D006524 6.7e-32 141.4 158 50.0
Actinidia34566 Actinidia chinensis HOM05D005420 ORTHO05D006524 8.7e-32 141.0 185 45.4
BcaC02g12350 Brassica carinata HOM05D005420 ORTHO05D006524 8.7e-32 141.0 160 49.4
BolC4t22118H Brassica oleracea HOM05D005420 ORTHO05D006524 8.7e-32 141.0 160 49.4
FAN26G3138 Fragaria x ananassa HOM05D005420 ORTHO05D006524 8.7e-32 141.0 160 48.1
Migut.G00921 Erythranthe guttata HOM05D005420 ORTHO05D006524 1.1e-31 140.6 198 44.4
AUR62002482 Chenopodium quinoa HOM05D005420 ORTHO05D006524 1.5e-31 140.2 160 48.1
AUR62023710 Chenopodium quinoa HOM05D005420 ORTHO05D006524 1.5e-31 140.2 160 48.1
MD00G1087500 Malus domestica HOM05D005420 ORTHO05D006524 1.5e-31 140.2 160 49.4
A05p04100 Brassica napus HOM05D005420 ORTHO05D006524 1.9e-31 139.8 160 48.8
THA.LOC104804283 Tarenaya hassleriana HOM05D005420 ORTHO05D006524 2.5e-31 139.4 160 48.8
Duzib177G0155 Durio zibethinus HOM05D005420 ORTHO05D006524 3.3e-31 139.0 160 48.8
SalBow3G4646 Salvia bowleyana HOM05D005420 ORTHO05D006524 3.3e-31 139.0 158 48.7
GSVIVG01026140001 Vitis vinifera HOM05D005420 ORTHO05D006524 5.7e-31 138.3 180 45.6
AL4G42820 Arabidopsis lyrata HOM05D005420 ORTHO05D006524 7.4e-31 137.9 160 48.8
AT2G43945 Arabidopsis thaliana HOM05D005420 ORTHO05D006524 7.4e-31 137.9 160 48.8
Carub.0004s2651 Capsella rubella HOM05D005420 ORTHO05D006524 7.4e-31 137.9 160 48.8
Duzib128G1088 Durio zibethinus HOM05D005420 ORTHO05D006524 7.4e-31 137.9 160 48.1
Thhalv10001571m.g Eutrema salsugineum HOM05D005420 ORTHO05D006524 7.4e-31 137.9 160 48.8
Sp4g26040 Schrenkiella parvula HOM05D005420 ORTHO05D006524 7.4e-31 137.9 160 48.8
Thecc.05G186000 Theobroma cacao HOM05D005420 ORTHO05D006524 7.4e-31 137.9 160 48.8
Aa31LG1G25640 Aethionema arabicum HOM05D005420 ORTHO05D006524 9.7e-31 137.5 160 48.8
A03p24600 Brassica napus HOM05D005420 ORTHO05D006524 9.7e-31 137.5 160 48.1
C03p29330 Brassica napus HOM05D005420 ORTHO05D006524 9.7e-31 137.5 160 48.1
BolC3t15280H Brassica oleracea HOM05D005420 ORTHO05D006524 9.7e-31 137.5 160 48.1
BraA03t11665Z Brassica rapa HOM05D005420 ORTHO05D006524 9.7e-31 137.5 160 48.1
Carub.0005s2660 Capsella rubella HOM05D005420 ORTHO05D006524 1.3e-30 137.1 160 47.5
CARHR139120 Cardamine hirsuta HOM05D005420 ORTHO05D006524 1.3e-30 137.1 160 48.8
AT3G59870 Arabidopsis thaliana HOM05D005420 ORTHO05D006524 1.6e-30 136.7 160 47.5
Cpa.g.sc151.6 Carica papaya HOM05D005420 ORTHO05D006524 1.6e-30 136.7 160 48.8
BcaB06g29350 Brassica carinata HOM05D005420 ORTHO05D006524 3.7e-30 135.6 160 48.1
Gohir.A02G106300 Gossypium hirsutum HOM05D005420 ORTHO05D006524 3.7e-30 135.6 160 47.5
Gohir.D03G071700 Gossypium hirsutum HOM05D005420 ORTHO05D006524 3.7e-30 135.6 160 47.5
Gorai.003G088300 Gossypium raimondii HOM05D005420 ORTHO05D006524 3.7e-30 135.6 160 47.5
Actinidia18399 Actinidia chinensis HOM05D005420 ORTHO05D006524 4.8e-30 135.2 158 48.7
Psat4g001320 Pisum sativum HOM05D005420 ORTHO05D006524 8.2e-30 134.4 161 47.8
Aa31LG10G14100 Aethionema arabicum HOM05D005420 ORTHO05D006524 6.9e-29 131.3 160 45.6
CBR_g10867 Chara braunii HOM05D005420 ORTHO05D006524 1.7e-27 126.7 90 68.9
Haze_11131 Corylus avellana HOM05D005420 ORTHO05D006524 2.1e-25 119.8 128 53.1
Dinv24753 Davidia involucrata HOM05D005420 ORTHO05D006524 2.1e-25 119.8 162 45.1
Manes.13G003200 Manihot esculenta HOM05D005420 ORTHO05D006524 1.3e-24 117.1 130 51.5
Nn3g18334 Nelumbo nucifera HOM05D005420 ORTHO05D006524 3.9e-24 115.5 162 43.2
AagrBONN_evm.TU.Sc2ySwM_228.1821 Anthoceros agrestis HOM05D005420 ORTHO05D006524 6.7e-24 114.8 95 56.8
Migut.N03031 Erythranthe guttata HOM05D005420 ORTHO05D006524 6.7e-24 114.8 141 46.8
Medtr4g134910 Medicago truncatula HOM05D005420 ORTHO05D006524 1.5e-23 113.6 141 46.1
Sc25g0003040 Simmondsia chinensis HOM05D005420 ORTHO05D006524 3.3e-23 112.5 142 45.1
Hund22588 Selenicereus undatus HOM05D005420 ORTHO05D006524 2.8e-22 109.4 142 45.1
Eucgr.L00810 Eucalyptus grandis HOM05D005420 ORTHO05D006524 5.3e-21 105.1 74 64.9
MCO05G102 Micromonas commoda HOM05D005420 ORTHO05D006524 2.0e-20 103.2 137 44.5
Oeu022910.1 Olea europaea HOM05D005420 ORTHO05D006524 2.0e-20 103.2 74 64.9
Cre16.g676450 Chlamydomonas reinhardtii HOM05D005420 ORTHO05D006524 1.3e-19 100.5 165 37.6
Eucgr.H01440 Eucalyptus grandis HOM05D005420 ORTHO05D006524 8.5e-19 97.8 74 63.5
PRCOL_00006877 Prasinoderma coloniale HOM05D005420 ORTHO05D006524 6.7e-16 88.2 133 38.3
Ca_13540_v3 Cicer arietinum L. HOM05D005420 ORTHO05D006524 1.7e-14 83.6 113 43.4
Zm00001eb356860 Zea mays HOM05D005420 ORTHO05D006524 4.8e-14 82.0 123 41.5
MSTRG.9265 Avicennia marina HOM05D005420 ORTHO05D006524 4.1e-13 79.0 71 57.7
Lalb_Chr18g0044961 Lupinus albus HOM05D005420 ORTHO05D006524 4.1e-13 79.0 107 45.8
Atru.chr12.1711 Acer truncatum HOM05D005420 ORTHO05D006524 1.7e-11 73.6 43 81.4


User provided reference genes

Program Settings