Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c20_16530 Physcomitrium patens HOM05D003583 ORTHO05D004169 3.6e-169 598.2 312 100.0
Pp3c23_9360 Physcomitrium patens HOM05D003583 ORTHO05D004169 1.2e-124 450.3 316 74.1
Pp3c23_3920 Physcomitrium patens HOM05D003583 ORTHO05D004169 2.2e-118 429.5 323 70.0
Pp3c24_8070 Physcomitrium patens HOM05D003583 ORTHO05D004169 2.0e-114 416.4 318 69.5
Mapoly0037s0072 Marchantia polymorpha HOM05D003583 ORTHO05D004169 1.3e-70 270.8 323 48.9
ATR0561G144 Amborella trichopoda HOM05D003583 ORTHO05D004169 1.0e-67 261.2 327 47.7
Peaxi162Scf00068g02311 Petunia axillaris HOM05D003583 ORTHO05D004169 4.0e-67 259.2 330 44.8
Lj1g0010920 Lotus japonicus HOM05D003583 ORTHO05D004169 1.2e-66 257.7 335 45.7
CiPaw.02G023700 Carya illinoinensis HOM05D003583 ORTHO05D004169 7.5e-66 255.0 321 47.7
Solyc09g059500.3 Solanum lycopersicum HOM05D003583 ORTHO05D004169 2.2e-65 253.4 335 45.1
Sopen09g022660 Solanum pennellii HOM05D003583 ORTHO05D004169 1.1e-64 251.1 334 45.5
CSS0028584 Camellia sinensis var. sinensis HOM05D003583 ORTHO05D004169 1.9e-64 250.4 338 48.8
Actinidia39429 Actinidia chinensis HOM05D003583 ORTHO05D004169 4.1e-64 249.2 338 48.8
Gohir.D07G205500 Gossypium hirsutum HOM05D003583 ORTHO05D004169 7.0e-64 248.4 337 44.5
Gorai.001G231500 Gossypium raimondii HOM05D003583 ORTHO05D004169 7.0e-64 248.4 337 44.5
Nitab4.5_0001161g0140 Nicotiana tabacum HOM05D003583 ORTHO05D004169 7.0e-64 248.4 342 44.2
Phvul.008G131301 Phaseolus vulgaris HOM05D003583 ORTHO05D004169 7.0e-64 248.4 325 45.5
CAN.G1418.4 Capsicum annuum HOM05D003583 ORTHO05D004169 9.2e-64 248.1 336 46.1
Duzib138G0093 Durio zibethinus HOM05D003583 ORTHO05D004169 1.2e-63 247.7 336 44.3
Gohir.A07G199000 Gossypium hirsutum HOM05D003583 ORTHO05D004169 1.2e-63 247.7 345 44.3
Os08g0528900 Oryza sativa ssp. japonica HOM05D003583 ORTHO05D004169 1.6e-63 247.3 337 44.2
Cfa004159 Carpinus fangiana HOM05D003583 ORTHO05D004169 2.0e-63 246.9 323 46.7
Ciclev10021065m.g Citrus clementina HOM05D003583 ORTHO05D004169 2.7e-63 246.5 324 44.8
TWI75G1818 Tripterygium wilfordii HOM05D003583 ORTHO05D004169 2.7e-63 246.5 325 46.2
VMungo1383G2149 Vigna mungo HOM05D003583 ORTHO05D004169 3.5e-63 246.1 331 45.3
DCAR_018637 Daucus carota HOM05D003583 ORTHO05D004169 4.6e-63 245.7 317 46.4
TAR633G0566 Trochodendron aralioides HOM05D003583 ORTHO05D004169 4.6e-63 245.7 339 43.7
HanXRQChr01g0015291 Helianthus annuus HOM05D003583 ORTHO05D004169 6.0e-63 245.4 308 46.1
Rhsim13G0047800 Rhododendron simsii HOM05D003583 ORTHO05D004169 6.0e-63 245.4 338 45.6
Sed0011833 Sechium edule HOM05D003583 ORTHO05D004169 6.0e-63 245.4 305 45.6
Thecc.01G220200 Theobroma cacao HOM05D003583 ORTHO05D004169 7.8e-63 245.0 341 44.3
COL.COLO4_15618 Corchorus olitorius HOM05D003583 ORTHO05D004169 1.0e-62 244.6 337 44.5
SEGI_31201 Sequoiadendron giganteum HOM05D003583 ORTHO05D004169 1.0e-62 244.6 347 41.5
Glyma.08G348400 Glycine max HOM05D003583 ORTHO05D004169 1.3e-62 244.2 326 48.8
Sed0008761 Sechium edule HOM05D003583 ORTHO05D004169 2.3e-62 243.4 342 43.6
GSVIVG01003252001 Vitis vinifera HOM05D003583 ORTHO05D004169 3.0e-62 243.0 324 46.9
Glyma.18G160200 Glycine max HOM05D003583 ORTHO05D004169 3.9e-62 242.7 326 48.2
BraA09t36092Z Brassica rapa HOM05D003583 ORTHO05D004169 5.0e-62 242.3 316 47.2
Cc01_g16710 Coffea canephora HOM05D003583 ORTHO05D004169 5.0e-62 242.3 339 44.0
Migut.N00631 Erythranthe guttata HOM05D003583 ORTHO05D004169 5.0e-62 242.3 349 41.8
Lj1A89T66 Lonicera japonica HOM05D003583 ORTHO05D004169 5.0e-62 242.3 319 45.5
BcaC04g23769 Brassica carinata HOM05D003583 ORTHO05D004169 6.6e-62 241.9 316 47.2
C09p04880 Brassica napus HOM05D003583 ORTHO05D004169 6.6e-62 241.9 316 47.2
BolC9t53416H Brassica oleracea HOM05D003583 ORTHO05D004169 6.6e-62 241.9 316 47.2
MELO3C022717.2 Cucumis melo HOM05D003583 ORTHO05D004169 6.6e-62 241.9 334 43.7
ClCG07G002090 Citrullus lanatus HOM05D003583 ORTHO05D004169 8.6e-62 241.5 334 43.7
TWI36G1542 Tripterygium wilfordii HOM05D003583 ORTHO05D004169 8.6e-62 241.5 327 44.6
CsaV3_3G030030 Cucumis sativus L. HOM05D003583 ORTHO05D004169 1.1e-61 241.1 333 44.1
Oeu030584.1 Olea europaea HOM05D003583 ORTHO05D004169 1.1e-61 241.1 333 45.6
Nitab4.5_0013864g0010 Nicotiana tabacum HOM05D003583 ORTHO05D004169 1.5e-61 240.7 304 46.1
SalBow6G4396 Salvia bowleyana HOM05D003583 ORTHO05D004169 1.9e-61 240.4 317 43.5
TPR.G6446 Trifolium pratense HOM05D003583 ORTHO05D004169 1.9e-61 240.4 359 45.4
Dinv19172 Davidia involucrata HOM05D003583 ORTHO05D004169 2.5e-61 240.0 343 43.1
Eucgr.K02138 Eucalyptus grandis HOM05D003583 ORTHO05D004169 3.3e-61 239.6 328 43.6
Manes.13G049400 Manihot esculenta HOM05D003583 ORTHO05D004169 3.3e-61 239.6 326 44.8
SalBow6G5082 Salvia bowleyana HOM05D003583 ORTHO05D004169 3.3e-61 239.6 322 43.2
Sc05g0001940 Simmondsia chinensis HOM05D003583 ORTHO05D004169 3.3e-61 239.6 324 46.9
Zm00001eb036350 Zea mays HOM05D003583 ORTHO05D004169 3.3e-61 239.6 325 44.3
A09p04570 Brassica napus HOM05D003583 ORTHO05D004169 4.3e-61 239.2 323 47.1
Potri.002G245900 Populus trichocarpa HOM05D003583 ORTHO05D004169 4.3e-61 239.2 329 43.8
SalBow3G2553 Salvia bowleyana HOM05D003583 ORTHO05D004169 4.3e-61 239.2 340 42.4
THA.LOC104822491 Tarenaya hassleriana HOM05D003583 ORTHO05D004169 4.3e-61 239.2 317 46.1
TAR362G1106 Trochodendron aralioides HOM05D003583 ORTHO05D004169 4.3e-61 239.2 329 45.3
Lalb_Chr19g0125831 Lupinus albus HOM05D003583 ORTHO05D004169 7.3e-61 238.4 351 43.9
Manes.12G047400 Manihot esculenta HOM05D003583 ORTHO05D004169 7.3e-61 238.4 338 44.4
BcaB04g19581 Brassica carinata HOM05D003583 ORTHO05D004169 9.5e-61 238.0 312 47.1
CANSAT01G0519 Cannabis sativa HOM05D003583 ORTHO05D004169 9.5e-61 238.0 336 47.9
HanXRQChr04g0108021 Helianthus annuus HOM05D003583 ORTHO05D004169 9.5e-61 238.0 329 45.0
Lsat_1_v5_gn_5_180820 Lactuca sativa HOM05D003583 ORTHO05D004169 9.5e-61 238.0 329 44.7
Prupe.8G198900 Prunus persica HOM05D003583 ORTHO05D004169 1.6e-60 237.3 341 44.6
arahy.Tifrunner.gnm1.ann1.6L1LF5 Arachis hypogaea HOM05D003583 ORTHO05D004169 2.1e-60 236.9 345 44.1
Solyc06g083350.3 Solanum lycopersicum HOM05D003583 ORTHO05D004169 2.1e-60 236.9 340 45.3
Hund05577 Selenicereus undatus HOM05D003583 ORTHO05D004169 3.6e-60 236.1 331 45.0
Sopen06g034720 Solanum pennellii HOM05D003583 ORTHO05D004169 3.6e-60 236.1 340 43.5
Dinv12649 Davidia involucrata HOM05D003583 ORTHO05D004169 4.7e-60 235.7 345 45.8
AUR62001132 Chenopodium quinoa HOM05D003583 ORTHO05D004169 6.2e-60 235.3 348 43.1
AUR62016547 Chenopodium quinoa HOM05D003583 ORTHO05D004169 6.2e-60 235.3 312 44.2
Duzib211G0612 Durio zibethinus HOM05D003583 ORTHO05D004169 8.1e-60 235.0 334 43.1
Lalb_Chr03g0041471 Lupinus albus HOM05D003583 ORTHO05D004169 8.1e-60 235.0 347 44.7
SEGI_22924 Sequoiadendron giganteum HOM05D003583 ORTHO05D004169 8.1e-60 235.0 315 43.2
MD10G1159800 Malus domestica HOM05D003583 ORTHO05D004169 1.1e-59 234.6 338 45.6
Sabra02G0187200 Salix brachista HOM05D003583 ORTHO05D004169 1.1e-59 234.6 362 41.7
AT3G07220 Arabidopsis thaliana HOM05D003583 ORTHO05D004169 1.4e-59 234.2 312 44.9
PGSC0003DMG400020100 Solanum tuberosum HOM05D003583 ORTHO05D004169 1.4e-59 234.2 340 44.7
arahy.Tifrunner.gnm1.ann1.SP3ESK Arachis hypogaea HOM05D003583 ORTHO05D004169 1.8e-59 233.8 340 44.1
Thhalv10004601m.g Eutrema salsugineum HOM05D003583 ORTHO05D004169 1.8e-59 233.8 321 44.5
MD05G1171600 Malus domestica HOM05D003583 ORTHO05D004169 2.3e-59 233.4 338 42.9
ECA236G5107 Erigeron canadensis HOM05D003583 ORTHO05D004169 3.1e-59 233.0 334 43.7
Nitab4.5_0003020g0040 Nicotiana tabacum HOM05D003583 ORTHO05D004169 3.1e-59 233.0 322 44.7
FAN24G2032 Fragaria x ananassa HOM05D003583 ORTHO05D004169 6.8e-59 231.9 341 42.8
AL3G18500 Arabidopsis lyrata HOM05D003583 ORTHO05D004169 8.9e-59 231.5 310 45.8
FvH4_2g18540 Fragaria vesca HOM05D003583 ORTHO05D004169 8.9e-59 231.5 340 42.9
Carub.0003s0675 Capsella rubella HOM05D003583 ORTHO05D004169 4.4e-58 229.2 312 44.6
MSTRG.17995 Avicennia marina HOM05D003583 ORTHO05D004169 9.8e-58 228.0 358 44.7
BcaC05g29745 Brassica carinata HOM05D003583 ORTHO05D004169 1.7e-57 227.3 318 42.8
CARHR081870 Cardamine hirsuta HOM05D003583 ORTHO05D004169 2.9e-57 226.5 320 45.0
FAN15G2515 Fragaria x ananassa HOM05D003583 ORTHO05D004169 2.9e-57 226.5 345 42.6
RcHm_v2.0_Chr6g0284101 Rosa chinensis HOM05D003583 ORTHO05D004169 2.9e-57 226.5 340 41.8
EL10Ac7g17902 Beta vulgaris HOM05D003583 ORTHO05D004169 3.7e-57 226.1 362 42.5
Hma1.2p1_0226F.1_g095390 Hydrangea macrophylla HOM05D003583 ORTHO05D004169 3.7e-57 226.1 350 45.1
Carub.0003s0679 Capsella rubella HOM05D003583 ORTHO05D004169 4.9e-57 225.7 314 46.5
FAN27G2245 Fragaria x ananassa HOM05D003583 ORTHO05D004169 4.9e-57 225.7 343 42.9
Sp3g06180 Schrenkiella parvula HOM05D003583 ORTHO05D004169 4.9e-57 225.7 312 44.2
Thhalv10021140m.g Eutrema salsugineum HOM05D003583 ORTHO05D004169 6.4e-57 225.3 317 43.5
PSO017G0014 Papaver somniferum HOM05D003583 ORTHO05D004169 6.4e-57 225.3 336 42.6
PSO063G4910 Papaver somniferum HOM05D003583 ORTHO05D004169 1.1e-56 224.6 334 42.5
HPP92_008214 Vanilla planifolia HOM05D003583 ORTHO05D004169 2.4e-56 223.4 293 43.7
AL3G18560 Arabidopsis lyrata HOM05D003583 ORTHO05D004169 5.4e-56 222.2 323 42.7
Haze_15252 Corylus avellana HOM05D003583 ORTHO05D004169 5.4e-56 222.2 319 44.8
Rhsim01G0252900 Rhododendron simsii HOM05D003583 ORTHO05D004169 5.4e-56 222.2 305 44.9
A05p40990 Brassica napus HOM05D003583 ORTHO05D004169 9.2e-56 221.5 313 45.0
Nitab4.5_0000045g0500 Nicotiana tabacum HOM05D003583 ORTHO05D004169 1.2e-55 221.1 404 38.4
SGA_v2.0_scaffold6G03502 Striga asiatica HOM05D003583 ORTHO05D004169 2.1e-55 220.3 317 46.7
C05p60140 Brassica napus HOM05D003583 ORTHO05D004169 2.7e-55 219.9 312 42.3
QL09p051234 Quercus lobata HOM05D003583 ORTHO05D004169 6.0e-55 218.8 404 36.6
Aa31LG5G17810 Aethionema arabicum HOM05D003583 ORTHO05D004169 1.0e-54 218.0 332 42.2
SMO166G0009 Selaginella moellendorffii HOM05D003583 ORTHO05D004169 1.7e-54 217.2 310 42.6
Aqoxy5G00027 Aquilegia oxysepala HOM05D003583 ORTHO05D004169 2.3e-54 216.9 360 45.0
BraA05t22826Z Brassica rapa HOM05D003583 ORTHO05D004169 2.3e-54 216.9 310 42.3
BcaC05g29851 Brassica carinata HOM05D003583 ORTHO05D004169 5.1e-54 215.7 313 42.8
BolC5t34665H Brassica oleracea HOM05D003583 ORTHO05D004169 8.6e-54 214.9 309 41.7
vmacro14733 Vaccinium macrocarpon HOM05D003583 ORTHO05D004169 1.1e-53 214.5 304 44.1
CAN.G874.6 Capsicum annuum HOM05D003583 ORTHO05D004169 1.9e-53 213.8 355 42.8
Gohir.D08G212800 Gossypium hirsutum HOM05D003583 ORTHO05D004169 3.3e-53 213.0 309 43.0
HPP92_003545 Vanilla planifolia HOM05D003583 ORTHO05D004169 3.6e-52 209.5 301 43.2
SMO115G0166 Selaginella moellendorffii HOM05D003583 ORTHO05D004169 1.1e-51 208.0 306 47.1
Psat3g148960 Pisum sativum HOM05D003583 ORTHO05D004169 1.4e-51 207.6 286 45.5
Cpa.g.sc34.102 Carica papaya HOM05D003583 ORTHO05D004169 4.0e-51 206.1 260 48.5
SGA_v2.0_scaffold3G01637 Striga asiatica HOM05D003583 ORTHO05D004169 6.8e-51 205.3 319 46.7
Atru.chr6.1424 Acer truncatum HOM05D003583 ORTHO05D004169 7.6e-50 201.8 247 49.4
Medtr7g055873 Medicago truncatula HOM05D003583 ORTHO05D004169 7.6e-50 201.8 124 79.0
Ca_03475_v3 Cicer arietinum L. HOM05D003583 ORTHO05D004169 2.9e-49 199.9 113 83.2
MBI11_g07419_MAGBIO Magnolia biondii HOM05D003583 ORTHO05D004169 3.8e-49 199.5 112 82.1
PGR044G2612 Punica granatum HOM05D003583 ORTHO05D004169 4.1e-48 196.1 112 83.0
SHI46266 Sapria himalayana HOM05D003583 ORTHO05D004169 4.1e-48 196.1 112 83.0
SHI46763 Sapria himalayana HOM05D003583 ORTHO05D004169 4.1e-48 196.1 112 83.0
Gohir.A08G195500 Gossypium hirsutum HOM05D003583 ORTHO05D004169 2.1e-47 193.7 319 39.2
AL4G16370 Arabidopsis lyrata HOM05D003583 ORTHO05D004169 1.7e-46 190.7 112 79.5
AT3G07260 Arabidopsis thaliana HOM05D003583 ORTHO05D004169 3.0e-46 189.9 112 80.4
unitig_749.g13590 Utricularia gibba HOM05D003583 ORTHO05D004169 3.0e-46 189.9 111 82.0
AagrBONN_evm.TU.Sc2ySwM_362.2525 Anthoceros agrestis HOM05D003583 ORTHO05D004169 6.6e-46 188.7 241 51.9
Lalb_Chr03g0041461 Lupinus albus HOM05D003583 ORTHO05D004169 4.7e-44 182.6 325 36.6
Zm00001eb169940 Zea mays HOM05D003583 ORTHO05D004169 2.0e-42 177.2 306 35.9
Gorai.004G226900 Gossypium raimondii HOM05D003583 ORTHO05D004169 3.4e-42 176.4 265 43.4
vmacro02783 Vaccinium macrocarpon HOM05D003583 ORTHO05D004169 3.4e-42 176.4 289 39.8
Lalb_Chr07g0194191 Lupinus albus HOM05D003583 ORTHO05D004169 6.4e-41 172.2 122 68.0
Oeu057861.1 Olea europaea HOM05D003583 ORTHO05D004169 5.4e-40 169.1 95 83.2
CBR_g31665 Chara braunii HOM05D003583 ORTHO05D004169 2.7e-39 166.8 108 73.1
Lalb_Chr19g0125841 Lupinus albus HOM05D003583 ORTHO05D004169 1.7e-38 164.1 112 65.2
unitig_0.g373 Utricularia gibba HOM05D003583 ORTHO05D004169 8.7e-38 161.8 300 38.0
Os09g0505200 Oryza sativa ssp. japonica HOM05D003583 ORTHO05D004169 3.3e-37 159.8 117 65.8
CANSAT01G1829 Cannabis sativa HOM05D003583 ORTHO05D004169 2.8e-36 156.8 114 65.8
Oeu009710.1 Olea europaea HOM05D003583 ORTHO05D004169 1.8e-35 154.1 182 48.9
SEGI_31438 Sequoiadendron giganteum HOM05D003583 ORTHO05D004169 3.3e-29 133.3 85 71.8
CDE06G0189 Ceratophyllum demersum HOM05D003583 ORTHO05D004169 4.3e-29 132.9 210 40.0
Nn5g31016 Nelumbo nucifera HOM05D003583 ORTHO05D004169 1.3e-28 131.3 103 64.1
unitig_60.g25602 Utricularia gibba HOM05D003583 ORTHO05D004169 1.7e-25 120.9 68 80.9
CANSAT01G3274 Cannabis sativa HOM05D003583 ORTHO05D004169 1.3e-22 111.3 111 53.2
Nn8g40493 Nelumbo nucifera HOM05D003583 ORTHO05D004169 8.7e-22 108.6 103 51.5
Cfa015657 Carpinus fangiana HOM05D003583 ORTHO05D004169 3.3e-21 106.7 87 57.5
TAR633G0104 Trochodendron aralioides HOM05D003583 ORTHO05D004169 9.6e-21 105.1 95 55.8
Nn5g26790 Nelumbo nucifera HOM05D003583 ORTHO05D004169 3.4e-18 96.7 71 66.2
Nn6g33306 Nelumbo nucifera HOM05D003583 ORTHO05D004169 3.4e-18 96.7 104 53.8
RcHm_v2.0_Chr5g0045161 Rosa chinensis HOM05D003583 ORTHO05D004169 4.5e-18 96.3 65 66.2
PGR044G2014 Punica granatum HOM05D003583 ORTHO05D004169 1.3e-17 94.7 265 28.7
Nn2g10235 Nelumbo nucifera HOM05D003583 ORTHO05D004169 4.9e-17 92.8 76 60.5
RcHm_v2.0_Chr5g0045171 Rosa chinensis HOM05D003583 ORTHO05D004169 6.5e-17 92.4 65 64.6
Zm00001eb115380 Zea mays HOM05D003583 ORTHO05D004169 6.5e-17 92.4 79 57.0
RcHm_v2.0_Chr1g0319631 Rosa chinensis HOM05D003583 ORTHO05D004169 3.5e-15 86.7 66 63.6
Nn7g37781 Nelumbo nucifera HOM05D003583 ORTHO05D004169 4.6e-15 86.3 89 53.9
RcHm_v2.0_Chr6g0245631 Rosa chinensis HOM05D003583 ORTHO05D004169 1.3e-14 84.7 62 62.9
Cre16.g648800 Chlamydomonas reinhardtii HOM05D003583 ORTHO05D004169 2.5e-13 80.5 88 50.0
Actinidia30051 Actinidia chinensis HOM05D003583 ORTHO05D004169 1.1e-11 75.1 165 33.3
Medtr7g055863 Medicago truncatula HOM05D003583 ORTHO05D004169 4.1e-11 73.2 133 34.6
Sp2g19040 Schrenkiella parvula HOM05D003583 ORTHO05D004169 6.9e-11 72.4 126 37.3
Ca_03474_v3 Cicer arietinum L. HOM05D003583 ORTHO05D004169 9.0e-11 72.0 133 33.8
Nn3g20050 Nelumbo nucifera HOM05D002516 ORTHO05D002703 1.5e-10 71.2 131 31.3
CDE06G1446 Ceratophyllum demersum HOM05D003583 ORTHO05D004169 2.9e-09 67.0 124 32.3
MBI11_g07418_MAGBIO Magnolia biondii HOM05D003583 ORTHO05D004169 3.8e-09 66.6 118 33.1
Nn1g07991 Nelumbo nucifera HOM05D003583 ORTHO05D004169 5.0e-09 66.2 118 32.2
Os11g0463600 Oryza sativa ssp. japonica HOM05D003583 ORTHO05D004169 6.5e-09 65.9 224 32.6
Rhsim10G0000100 Rhododendron simsii HOM05D000576 ORTHO05D000368 1.9e-08 64.3 64 57.8
Nn2g11337 Nelumbo nucifera HOM05D003583 ORTHO05D004169 9.3e-08 62.0 104 40.4
RcHm_v2.0_Chr5g0072291 Rosa chinensis HOM05D003583 ORTHO05D004169 2.1e-07 60.8 47 61.7
Atru.chr3.755 Acer truncatum HOM05D002790 ORTHO05D003033 5.1e-06 56.2 118 31.4


User provided reference genes

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