Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c20_1650 Physcomitrium patens HOM05D004748 ORTHO05D005825 0.0e+00 1315.8 671 100.0
Mapoly0185s0006 Marchantia polymorpha HOM05D004748 ORTHO05D005825 1.5e-151 540.8 378 72.0
AagrBONN_evm.TU.Sc2ySwM_344.1578 Anthoceros agrestis HOM05D004748 ORTHO05D005825 9.0e-149 531.6 372 71.5
SMO228G0169 Selaginella moellendorffii HOM05D004748 ORTHO05D005825 5.3e-141 505.8 343 72.0
GSVIVG01029626001 Vitis vinifera HOM05D004748 ORTHO05D005825 1.9e-138 497.3 344 72.1
CsaV3_7G033760 Cucumis sativus L. HOM05D004748 ORTHO05D005825 4.6e-137 492.7 344 70.6
Migut.I01182 Erythranthe guttata HOM05D004748 ORTHO05D005825 1.0e-136 491.5 347 70.0
Peaxi162Scf00207g01631 Petunia axillaris HOM05D004748 ORTHO05D005825 3.9e-136 489.6 395 63.0
Nn8g40686 Nelumbo nucifera HOM05D004748 ORTHO05D005825 1.5e-135 487.6 343 70.6
DCAR_022622 Daucus carota HOM05D004748 ORTHO05D005825 1.9e-135 487.3 347 69.2
Potri.010G251300 Populus trichocarpa HOM05D004748 ORTHO05D005825 1.9e-135 487.3 344 69.8
COL.COLO4_31191 Corchorus olitorius HOM05D004748 ORTHO05D005825 3.3e-135 486.5 339 71.7
Manes.03G081362 Manihot esculenta HOM05D004748 ORTHO05D005825 4.3e-135 486.1 396 64.1
Sed0019048 Sechium edule HOM05D004748 ORTHO05D005825 4.3e-135 486.1 344 69.5
HanXRQChr10g0311461 Helianthus annuus HOM05D004748 ORTHO05D005825 5.6e-135 485.7 390 64.6
THA.LOC104816897 Tarenaya hassleriana HOM05D004748 ORTHO05D005825 5.6e-135 485.7 344 69.5
MBI14_g10723_MAGBIO Magnolia biondii HOM05D004748 ORTHO05D005825 7.4e-135 485.3 364 67.3
QL05p082110 Quercus lobata HOM05D004748 ORTHO05D005825 7.4e-135 485.3 345 69.9
TAR625G1093 Trochodendron aralioides HOM05D004748 ORTHO05D005825 7.4e-135 485.3 345 70.1
Os04g0298200 Oryza sativa ssp. japonica HOM05D004748 ORTHO05D005825 1.3e-134 484.6 342 70.5
CSS0006652 Camellia sinensis var. sinensis HOM05D004748 ORTHO05D005825 2.1e-134 483.8 345 68.4
Sabra10G0195200 Salix brachista HOM05D004748 ORTHO05D005825 2.1e-134 483.8 344 69.8
Actinidia31132 Actinidia chinensis HOM05D004748 ORTHO05D005825 3.7e-134 483.0 387 64.9
MD17G1146400 Malus domestica HOM05D004748 ORTHO05D005825 4.8e-134 482.6 344 70.1
CiPaw.01G089000 Carya illinoinensis HOM05D004748 ORTHO05D005825 6.2e-134 482.3 345 69.3
PGSC0003DMG400026506 Solanum tuberosum HOM05D004748 ORTHO05D005825 1.4e-133 481.1 347 68.6
Lj3g0017034 Lotus japonicus HOM05D004748 ORTHO05D005825 1.8e-133 480.7 349 69.3
Solyc06g063250.3 Solanum lycopersicum HOM05D004748 ORTHO05D005825 1.8e-133 480.7 393 63.9
ATR0580G210 Amborella trichopoda HOM05D004748 ORTHO05D005825 2.4e-133 480.3 343 69.7
Sopen06g022700 Solanum pennellii HOM05D004748 ORTHO05D005825 2.4e-133 480.3 393 63.9
Thecc.06G061000 Theobroma cacao HOM05D004748 ORTHO05D005825 2.4e-133 480.3 339 70.2
Cfa002138 Carpinus fangiana HOM05D004748 ORTHO05D005825 3.1e-133 479.9 344 69.2
Prupe.3G019200 Prunus persica HOM05D004748 ORTHO05D005825 4.0e-133 479.6 345 69.3
Gorai.010G141000 Gossypium raimondii HOM05D004748 ORTHO05D005825 5.3e-133 479.2 339 70.2
Rhsim12G0214600 Rhododendron simsii HOM05D004748 ORTHO05D005825 5.3e-133 479.2 345 68.7
RcHm_v2.0_Chr2g0149771 Rosa chinensis HOM05D004748 ORTHO05D005825 6.9e-133 478.8 339 70.5
TWI12G1435 Tripterygium wilfordii HOM05D004748 ORTHO05D005825 6.9e-133 478.8 344 69.8
Zm00001eb086340 Zea mays HOM05D004748 ORTHO05D005825 6.9e-133 478.8 342 69.9
CDE04G0266 Ceratophyllum demersum HOM05D004748 ORTHO05D005825 1.2e-132 478.0 345 68.7
Gohir.A06G115900 Gossypium hirsutum HOM05D004748 ORTHO05D005825 1.2e-132 478.0 339 69.9
Gohir.D06G120700 Gossypium hirsutum HOM05D004748 ORTHO05D005825 1.2e-132 478.0 339 69.9
CANSAT01G3164 Cannabis sativa HOM05D004748 ORTHO05D005825 1.5e-132 477.6 344 69.2
Lalb_Chr04g0264641 Lupinus albus HOM05D004748 ORTHO05D005825 1.5e-132 477.6 380 65.5
Cc04_g00320 Coffea canephora HOM05D004748 ORTHO05D005825 2.6e-132 476.9 409 60.1
CARHR041760 Cardamine hirsuta HOM05D004748 ORTHO05D005825 4.5e-132 476.1 404 60.4
Aa31LG10G3160 Aethionema arabicum HOM05D004748 ORTHO05D005825 5.8e-132 475.7 340 69.4
MELO3C024289.2 Cucumis melo HOM05D004748 ORTHO05D005825 5.8e-132 475.7 386 64.2
PSO170G5564 Papaver somniferum HOM05D004748 ORTHO05D005825 5.8e-132 475.7 359 67.4
Glyma.08G222000 Glycine max HOM05D004748 ORTHO05D005825 7.6e-132 475.3 339 69.0
PSO017G2012 Papaver somniferum HOM05D004748 ORTHO05D005825 7.6e-132 475.3 357 67.5
Ca_20497_v3 Cicer arietinum L. HOM05D004748 ORTHO05D005825 9.9e-132 474.9 339 69.0
SHI31092 Sapria himalayana HOM05D004748 ORTHO05D005825 9.9e-132 474.9 342 68.4
AT1G51610 Arabidopsis thaliana HOM05D004748 ORTHO05D005825 1.3e-131 474.6 344 67.7
CDE07G1729 Ceratophyllum demersum HOM05D004748 ORTHO05D005825 1.3e-131 474.6 345 68.4
AUR62025643 Chenopodium quinoa HOM05D004748 ORTHO05D005825 1.3e-131 474.6 339 69.3
FvH4_6g37160 Fragaria vesca HOM05D004748 ORTHO05D005825 1.7e-131 474.2 339 69.6
FAN14G2305 Fragaria x ananassa HOM05D004748 ORTHO05D005825 1.7e-131 474.2 339 69.6
BcaB07g33612 Brassica carinata HOM05D004748 ORTHO05D005825 2.2e-131 473.8 339 68.4
Carub.0001s4046 Capsella rubella HOM05D004748 ORTHO05D005825 2.2e-131 473.8 343 67.9
Eucgr.F04020 Eucalyptus grandis HOM05D004748 ORTHO05D005825 2.2e-131 473.8 340 69.1
Phvul.008G254900 Phaseolus vulgaris HOM05D004748 ORTHO05D005825 2.2e-131 473.8 339 69.6
PGR102G1746 Punica granatum HOM05D004748 ORTHO05D005825 2.2e-131 473.8 343 68.8
BraA06t23445Z Brassica rapa HOM05D004748 ORTHO05D005825 2.9e-131 473.4 387 63.3
MD09G1160600 Malus domestica HOM05D004748 ORTHO05D005825 2.9e-131 473.4 339 70.2
Aqoxy7G02343 Aquilegia oxysepala HOM05D004748 ORTHO05D005825 3.8e-131 473.0 395 62.3
AL1G59520 Arabidopsis lyrata HOM05D004748 ORTHO05D005825 3.8e-131 473.0 343 67.9
A06p02380 Brassica napus HOM05D004748 ORTHO05D005825 3.8e-131 473.0 339 68.4
C06p06730 Brassica napus HOM05D004748 ORTHO05D005825 3.8e-131 473.0 339 68.4
AUR62001358 Chenopodium quinoa HOM05D004748 ORTHO05D005825 3.8e-131 473.0 339 69.0
HPP92_026143 Vanilla planifolia HOM05D004748 ORTHO05D005825 3.8e-131 473.0 406 62.3
Medtr4g008150 Medicago truncatula HOM05D004748 ORTHO05D005825 4.9e-131 472.6 339 69.0
Sp1g38250 Schrenkiella parvula HOM05D004748 ORTHO05D005825 6.4e-131 472.2 339 68.1
BcaC08g43322 Brassica carinata HOM05D004748 ORTHO05D005825 1.1e-130 471.5 381 63.3
BolC6t35782H Brassica oleracea HOM05D004748 ORTHO05D005825 1.1e-130 471.5 381 63.3
FAN05G0392 Fragaria x ananassa HOM05D004748 ORTHO05D005825 1.1e-130 471.5 339 69.3
FAN05G2438 Fragaria x ananassa HOM05D004748 ORTHO05D005825 1.1e-130 471.5 339 69.3
FAN09G1322 Fragaria x ananassa HOM05D004748 ORTHO05D005825 1.1e-130 471.5 339 69.0
TPR.G15725 Trifolium pratense HOM05D004748 ORTHO05D005825 1.1e-130 471.5 339 69.0
MSTRG.10889 Avicennia marina HOM05D004748 ORTHO05D005825 1.4e-130 471.1 347 67.1
Hma1.2p1_0517F.1_g170670 Hydrangea macrophylla HOM05D004748 ORTHO05D005825 1.4e-130 471.1 341 69.2
EL10Ac7g18182 Beta vulgaris HOM05D004748 ORTHO05D005825 2.5e-130 470.3 339 69.0
VMungo0647G1450 Vigna mungo HOM05D004748 ORTHO05D005825 3.2e-130 469.9 339 69.0
Duzib192G0179 Durio zibethinus HOM05D004748 ORTHO05D005825 7.1e-130 468.8 339 69.6
Atru.chr1.2705 Acer truncatum HOM05D004748 ORTHO05D005825 3.5e-129 466.5 348 67.8
Ah.15g094390 Amaranthus hybridus HOM05D004748 ORTHO05D005825 3.5e-129 466.5 343 66.2
ECA234G0898 Erigeron canadensis HOM05D004748 ORTHO05D005825 7.9e-129 465.3 334 68.6
BcaB02g11258 Brassica carinata HOM05D004748 ORTHO05D005825 1.5e-127 461.1 339 67.8
BcaC08g43922 Brassica carinata HOM05D004748 ORTHO05D005825 1.9e-127 460.7 339 67.6
BolC6t36471H Brassica oleracea HOM05D004748 ORTHO05D005825 1.9e-127 460.7 339 67.6
BraA05t20854Z Brassica rapa HOM05D004748 ORTHO05D005825 4.3e-127 459.5 339 67.3
Lsat_1_v5_gn_5_137380 Lactuca sativa HOM05D004748 ORTHO05D005825 5.6e-127 459.1 338 67.5
unitig_748.g7080 Utricularia gibba HOM05D006371 ORTHO05D005825 9.6e-127 458.4 343 65.6
A05p19500 Brassica napus HOM05D004748 ORTHO05D005825 1.6e-126 457.6 338 67.5
arahy.Tifrunner.gnm1.ann1.660VQ8 Arachis hypogaea HOM05D004748 ORTHO05D005825 3.4e-124 449.9 357 65.5
SGA_v2.0_scaffold71G24004 Striga asiatica HOM05D004748 ORTHO05D005825 1.3e-123 448.0 346 65.3
CAN.G308.5 Capsicum annuum HOM05D004748 ORTHO05D005825 5.5e-122 442.6 313 69.3
arahy.Tifrunner.gnm1.ann1.2A2X48 Arachis hypogaea HOM05D004748 ORTHO05D005825 3.5e-121 439.9 352 64.2
Nitab4.5_0003757g0030 Nicotiana tabacum HOM05D004748 ORTHO05D005825 3.9e-120 436.4 317 68.5
Hund18602 Selenicereus undatus HOM05D004748 ORTHO05D005825 1.5e-119 434.5 478 50.6
Hund05683 Selenicereus undatus HOM05D004748 ORTHO05D005825 9.7e-119 431.8 354 61.9
Nitab4.5_0001691g0140 Nicotiana tabacum HOM05D004748 ORTHO05D005825 6.9e-117 425.6 327 64.5
Lj5A24T50 Lonicera japonica HOM05D004748 ORTHO05D005825 2.9e-115 420.2 332 64.2
Peaxi162Scf00038g02524 Petunia axillaris HOM05D004748 ORTHO05D005825 5.0e-115 419.5 313 65.8
Oeu001810.2 Olea europaea HOM05D004748 ORTHO05D005825 8.5e-115 418.7 297 69.0
Duzib235G0633 Durio zibethinus HOM05D004748 ORTHO05D005825 7.2e-114 415.6 339 62.8
ClCG09G001570 Citrullus lanatus HOM05D004748 ORTHO05D005825 2.7e-113 413.7 344 63.7
Ciclev10025586m.g Citrus clementina HOM05D004748 ORTHO05D005825 1.4e-112 411.4 309 67.0
Psat7g261000 Pisum sativum HOM05D004748 ORTHO05D005825 2.4e-109 400.6 280 71.1
Lj9C541G21 Lonicera japonica HOM05D004748 ORTHO05D001811 1.9e-106 391.0 418 51.9
Nitab4.5_0012506g0020 Nicotiana tabacum HOM05D004748 ORTHO05D005825 1.9e-106 391.0 339 59.0
Nitab4.5_0002661g0120 Nicotiana tabacum HOM05D004748 ORTHO05D005825 1.4e-101 374.8 437 50.8
Hma1.2p1_0517F.1_g170660 Hydrangea macrophylla HOM05D004748 ORTHO05D005825 3.8e-99 366.7 261 70.9
SEGI_05538 Sequoiadendron giganteum HOM05D004748 ORTHO05D005825 6.5e-99 365.9 249 72.3
Glyma.07G020100 Glycine max HOM05D004748 ORTHO05D005825 4.4e-95 353.2 252 71.0
Zm00001eb420390 Zea mays HOM05D004748 ORTHO05D005825 1.1e-90 338.6 249 68.7
Dinv20350 Davidia involucrata HOM05D004748 ORTHO05D005825 1.2e-89 335.1 249 69.9
Thhalv10011469m.g Eutrema salsugineum HOM05D004748 ORTHO05D005825 1.4e-85 321.6 237 68.8
Sc12g0011080 Simmondsia chinensis HOM05D004748 ORTHO05D005825 9.1e-85 318.9 239 67.8
MCO14G368 Micromonas commoda HOM05D004748 ORTHO05D005825 4.7e-81 306.6 332 50.9
Cre06.g289150 Chlamydomonas reinhardtii HOM05D004748 ORTHO05D005825 2.0e-79 301.2 328 48.5
vmacro17059 Vaccinium macrocarpon HOM05D004748 ORTHO05D005825 2.1e-73 281.2 206 69.9
Cpa.g.sc67.6 Carica papaya HOM05D004748 ORTHO05D005825 5.8e-63 246.5 162 77.2
Haze_16292 Corylus avellana HOM05D004748 ORTHO05D005825 5.8e-63 246.5 163 76.1
Haze_26513 Corylus avellana HOM05D004748 ORTHO05D005825 2.3e-59 234.6 334 38.3
C06p13150 Brassica napus HOM05D004748 ORTHO05D005825 3.3e-58 230.7 180 62.2
PRCOL_00004355 Prasinoderma coloniale HOM05D004748 ORTHO05D005825 8.9e-56 222.6 375 40.0
FAN02G0724 Fragaria x ananassa HOM05D004748 ORTHO05D005825 8.9e-48 196.1 132 73.5
FAN02G4052 Fragaria x ananassa HOM05D004748 ORTHO05D005825 2.3e-43 181.4 144 59.0
Cpa.g.sc67.3 Carica papaya HOM05D004748 ORTHO05D005825 2.1e-41 174.9 120 65.8
BcaB04g17188 Brassica carinata HOM05D001232 ORTHO05D001073 4.4e-39 167.2 339 37.8
Actinidia00640 Actinidia chinensis HOM05D004748 ORTHO05D005825 4.6e-36 157.1 108 67.6
SEGI_34839 Sequoiadendron giganteum HOM05D004748 ORTHO05D005825 4.6e-28 130.6 83 69.9
Actinidia00641 Actinidia chinensis HOM05D004748 ORTHO05D005825 1.0e-27 129.4 108 64.8
SEGI_05879 Sequoiadendron giganteum HOM05D004748 ORTHO05D002681 1.4e-24 119.0 116 56.9
GSVIVG01029613001 Vitis vinifera HOM05D004748 ORTHO05D005825 6.4e-22 110.2 71 78.9
FAN05G1723 Fragaria x ananassa HOM05D000043 ORTHO05D001551 8.4e-22 109.8 79 63.3
Haze_16297 Corylus avellana HOM05D004748 ORTHO05D005825 3.2e-21 107.8 108 50.9
CARHR041770 Cardamine hirsuta HOM05D004748 ORTHO05D005825 4.2e-21 107.5 128 43.8
GSVIVG01029603001 Vitis vinifera HOM05D004748 ORTHO05D005825 6.7e-19 100.1 64 79.7
BcaC03g16763 Brassica carinata HOM05D004748 ORTHO05D005825 1.5e-18 99.0 75 61.3
C02p46400 Brassica napus HOM05D004748 ORTHO05D005825 1.5e-18 99.0 75 61.3
BolC2t10691H Brassica oleracea HOM05D004748 ORTHO05D005825 1.5e-18 99.0 75 61.3
A04p28800 Brassica napus HOM05D004748 ORTHO05D005825 1.6e-17 95.5 75 58.7
BraA08t33859Z Brassica rapa HOM05D004748 ORTHO05D005825 1.6e-17 95.5 75 58.7
BraA04t18357Z Brassica rapa HOM05D004748 ORTHO05D005825 6.2e-17 93.6 75 57.3
CAN.G126.34 Capsicum annuum HOM05D004748 ORTHO05D005825 4.0e-16 90.9 125 39.2
Haze_16294 Corylus avellana HOM05D004748 ORTHO05D005825 2.2e-14 85.1 79 55.7
RcHm_v2.0_Chr1g0341791 Rosa chinensis HOM05D004748 ORTHO05D005825 1.2e-12 79.3 64 59.4
A10p03860 Brassica napus HOM05D004748 ORTHO05D005825 6.9e-08 63.5 82 43.9
RcHm_v2.0_Chr7g0197681 Rosa chinensis HOM05D004748 ORTHO05D005825 1.2e-07 62.8 54 59.3
GSVIVG01029622001 Vitis vinifera HOM05D004748 ORTHO05D005825 1.5e-07 62.4 36 83.3
FAN03G2435 Fragaria x ananassa HOM05D000153 ORTHO05D000118 4.5e-07 60.8 48 60.4
arahy.Tifrunner.gnm1.ann1.W4KKVA Arachis hypogaea HOM05D005785 ORTHO05D007962 1.0e-06 59.7 46 63.0


User provided reference genes

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