Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c20_15710 Physcomitrium patens HOM05D003628 ORTHO05D004253 9.8e-312 1072.8 716 100.0
Pp3c24_10590 Physcomitrium patens HOM05D003628 ORTHO05D004253 5.1e-150 535.8 718 66.2
Pp3c23_8100 Physcomitrium patens HOM05D003628 ORTHO05D004253 1.3e-108 398.3 424 59.7
Hma1.2p1_1241F.1_g269760 Hydrangea macrophylla HOM05D003628 ORTHO05D004253 1.4e-54 218.8 423 38.1
Hma1.2p1_0574F.1_g181510 Hydrangea macrophylla HOM05D003628 ORTHO05D004253 5.2e-54 216.9 422 38.4
Nn1g03063 Nelumbo nucifera HOM05D003628 ORTHO05D004253 2.6e-53 214.5 422 37.4
ATR0580G379 Amborella trichopoda HOM05D003628 ORTHO05D004253 3.4e-53 214.2 424 36.6
AagrBONN_evm.TU.Sc2ySwM_362.1684 Anthoceros agrestis HOM05D003628 ORTHO05D004253 1.4e-51 208.8 415 37.1
Dinv27142 Davidia involucrata HOM05D003628 ORTHO05D004253 5.4e-51 206.8 425 37.4
THA.LOC104821624 Tarenaya hassleriana HOM05D003628 ORTHO05D004253 1.2e-50 205.7 424 36.1
Potri.010G062000 Populus trichocarpa HOM05D003628 ORTHO05D004253 2.7e-50 204.5 424 37.0
Glyma.20G079600 Glycine max HOM05D003628 ORTHO05D004253 1.0e-49 202.6 422 37.2
Manes.15G048200 Manihot esculenta HOM05D003628 ORTHO05D004253 1.0e-49 202.6 422 36.5
QL06p022355 Quercus lobata HOM05D003628 ORTHO05D004253 1.3e-49 202.2 423 35.7
Mapoly0068s0063 Marchantia polymorpha HOM05D003628 ORTHO05D004253 1.7e-49 201.8 439 37.8
Nitab4.5_0001998g0040 Nicotiana tabacum HOM05D003628 ORTHO05D004253 3.9e-49 200.7 425 36.9
Nitab4.5_0002738g0080 Nicotiana tabacum HOM05D003628 ORTHO05D004253 3.9e-49 200.7 423 36.2
CANSAT78G2050 Cannabis sativa HOM05D003628 ORTHO05D004253 5.0e-49 200.3 426 35.9
Actinidia39943 Actinidia chinensis HOM05D003628 ORTHO05D004253 8.6e-49 199.5 422 36.0
Lj6g0006649 Lotus japonicus HOM05D003628 ORTHO05D004253 1.9e-48 198.4 422 37.4
GSVIVG01029001001 Vitis vinifera HOM05D003628 ORTHO05D004253 2.5e-48 198.0 423 35.7
Peaxi162Scf01007g00014 Petunia axillaris HOM05D003628 ORTHO05D004253 7.3e-48 196.4 423 35.2
Sopen12g032860 Solanum pennellii HOM05D003628 ORTHO05D004253 7.3e-48 196.4 417 36.0
Ca_11787_v3 Cicer arietinum L. HOM05D003628 ORTHO05D004253 1.6e-47 195.3 422 35.8
Solyc12g097070.3 Solanum lycopersicum HOM05D003628 ORTHO05D004253 3.6e-47 194.1 417 35.7
PSO764G0031 Papaver somniferum HOM05D003628 ORTHO05D004253 8.1e-47 193.0 424 35.1
TWI09G0941 Tripterygium wilfordii HOM05D003628 ORTHO05D004253 1.1e-46 192.6 422 35.1
Lalb_Chr01g0011261 Lupinus albus HOM05D003628 ORTHO05D004253 1.4e-46 192.2 424 35.6
Dinv29776 Davidia involucrata HOM05D003628 ORTHO05D004253 1.8e-46 191.8 424 35.8
CAN.G566.2 Capsicum annuum HOM05D003628 ORTHO05D004253 4.0e-46 190.7 417 34.8
Migut.G00600 Erythranthe guttata HOM05D003628 ORTHO05D004253 6.8e-46 189.9 422 34.1
PSO832G4023 Papaver somniferum HOM05D003628 ORTHO05D004253 6.8e-46 189.9 426 34.5
Gorai.011G164000 Gossypium raimondii HOM05D003628 ORTHO05D004253 8.9e-46 189.5 421 34.9
Gohir.D10G146700 Gossypium hirsutum HOM05D003628 ORTHO05D004253 3.4e-45 187.6 421 34.7
Psat6g109680 Pisum sativum HOM05D003628 ORTHO05D004253 4.4e-45 187.2 424 35.1
Atru.chr4.1847 Acer truncatum HOM05D003628 ORTHO05D004253 5.8e-45 186.8 425 34.6
arahy.Tifrunner.gnm1.ann1.STBA65 Arachis hypogaea HOM05D003628 ORTHO05D004253 1.7e-44 185.3 419 35.6
Sc19g0002160 Simmondsia chinensis HOM05D003628 ORTHO05D004253 2.9e-44 184.5 423 34.3
AUR62030025 Chenopodium quinoa HOM05D003628 ORTHO05D004253 3.7e-44 184.1 416 33.9
arahy.Tifrunner.gnm1.ann1.7KG1FV Arachis hypogaea HOM05D003628 ORTHO05D004253 8.3e-44 183.0 419 35.3
CsaV3_2G012280 Cucumis sativus L. HOM05D003628 ORTHO05D004253 1.9e-43 181.8 422 33.9
PGR142G1422 Punica granatum HOM05D003628 ORTHO05D004253 2.4e-43 181.4 425 35.3
TWI73G0229 Tripterygium wilfordii HOM05D003628 ORTHO05D004253 2.4e-43 181.4 422 34.1
Manes.03G155400 Manihot esculenta HOM05D003628 ORTHO05D004253 4.1e-43 180.6 421 33.5
TAR362G1171 Trochodendron aralioides HOM05D003628 ORTHO05D004253 5.4e-43 180.3 396 34.3
TPR.G23641 Trifolium pratense HOM05D003628 ORTHO05D004253 7.1e-43 179.9 427 34.4
unitig_748.g7341 Utricularia gibba HOM05D003628 ORTHO05D004253 2.1e-42 178.3 417 34.3
AUR62002607 Chenopodium quinoa HOM05D003628 ORTHO05D004253 1.3e-41 175.6 415 33.0
Cc03_g07010 Coffea canephora HOM05D003628 ORTHO05D004253 5.1e-41 173.7 423 34.0
BraA07t28601Z Brassica rapa HOM05D003628 ORTHO05D004253 6.6e-41 173.3 490 32.0
EL10Ac3g06305 Beta vulgaris HOM05D003628 ORTHO05D004253 8.6e-41 172.9 417 32.9
BcaB03g14597 Brassica carinata HOM05D003628 ORTHO05D004253 1.1e-40 172.6 422 33.2
FAN22G0313 Fragaria x ananassa HOM05D003628 ORTHO05D004253 1.1e-40 172.6 422 33.2
Medtr1g046350 Medicago truncatula HOM05D003628 ORTHO05D004253 1.5e-40 172.2 426 33.8
MSTRG.4198 Avicennia marina HOM05D003628 ORTHO05D004253 2.5e-40 171.4 422 33.4
SGA_v2.0_scaffold57G20181 Striga asiatica HOM05D003628 ORTHO05D004253 2.5e-40 171.4 370 35.7
Sabra10G0044300 Salix brachista HOM05D006620 ORTHO05D008921 3.3e-40 171.0 402 35.6
Zm00001eb365010 Zea mays HOM05D003628 ORTHO05D004253 3.3e-40 171.0 417 33.6
Lalb_Chr03g0036821 Lupinus albus HOM05D003628 ORTHO05D004253 5.6e-40 170.2 442 33.9
Ah.07g204120 Amaranthus hybridus HOM05D003628 ORTHO05D004253 6.2e-39 166.8 415 31.1
Gohir.D02G032600 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.8e-38 165.2 426 32.9
CSS0021427 Camellia sinensis var. sinensis HOM05D003628 ORTHO05D004253 2.3e-38 164.9 422 33.4
CiPaw.02G103800 Carya illinoinensis HOM05D003628 ORTHO05D004253 2.3e-38 164.9 422 33.4
Gohir.A02G025400 Gossypium hirsutum HOM05D003628 ORTHO05D004253 3.1e-38 164.5 421 32.3
Zm00001eb143670 Zea mays HOM05D003628 ORTHO05D004253 3.1e-38 164.5 417 31.7
Gorai.005G036000 Gossypium raimondii HOM05D003628 ORTHO05D004253 4.0e-38 164.1 426 33.1
TAR633G2428 Trochodendron aralioides HOM05D003628 ORTHO05D004253 5.2e-38 163.7 425 32.9
CSS0020381 Camellia sinensis var. sinensis HOM05D003628 ORTHO05D004253 6.8e-38 163.3 424 33.3
THA.LOC104804570 Tarenaya hassleriana HOM05D003628 ORTHO05D004253 2.0e-37 161.8 424 31.6
Peaxi162Scf00047g00163 Petunia axillaris HOM05D003628 ORTHO05D004253 3.4e-37 161.0 426 33.3
Os01g0911800 Oryza sativa ssp. japonica HOM05D003628 ORTHO05D004253 1.3e-36 159.1 415 31.3
VMungo0720G2372 Vigna mungo HOM05D003628 ORTHO05D004253 8.4e-36 156.4 418 32.8
Nitab4.5_0000451g0120 Nicotiana tabacum HOM05D003628 ORTHO05D004253 1.4e-35 155.6 424 32.5
RcHm_v2.0_Chr4g0396341 Rosa chinensis HOM05D003628 ORTHO05D004253 4.1e-35 154.1 422 32.5
BcaB06g26600 Brassica carinata HOM05D003628 ORTHO05D004253 4.6e-34 150.6 422 30.3
C07p12290 Brassica napus HOM05D003628 ORTHO05D004253 2.3e-33 148.3 424 30.2
C07p12320 Brassica napus HOM05D003628 ORTHO05D004253 2.3e-33 148.3 424 30.2
Sabra08G0133300 Salix brachista HOM05D003628 ORTHO05D004253 3.9e-33 147.5 433 32.3
Duzib212G0614 Durio zibethinus HOM05D003628 ORTHO05D004253 5.1e-33 147.1 424 31.6
Thhalv10002420m.g Eutrema salsugineum HOM05D003628 ORTHO05D004253 8.6e-33 146.4 422 31.3
BcaB04g20394 Brassica carinata HOM05D003628 ORTHO05D004253 1.5e-32 145.6 422 29.9
Glyma.10G128350 Glycine max HOM05D003628 ORTHO05D004253 4.3e-32 144.1 365 34.2
CiPaw.01G174500 Carya illinoinensis HOM05D003628 ORTHO05D004253 7.3e-32 143.3 424 30.7
CBR_g38414 Chara braunii HOM05D003628 ORTHO05D004253 7.3e-32 143.3 420 29.8
Gorai.006G218800 Gossypium raimondii HOM05D003628 ORTHO05D004253 1.6e-31 142.1 423 31.0
ECA234G0302 Erigeron canadensis HOM05D003628 ORTHO05D004253 2.1e-31 141.7 420 30.7
Lalb_Chr19g0128621 Lupinus albus HOM05D003628 ORTHO05D004253 4.7e-31 140.6 426 31.2
Aa31LG8G10920 Aethionema arabicum HOM05D003628 ORTHO05D004253 6.2e-31 140.2 416 30.3
MBI05_g37047_MAGBIO Magnolia biondii HOM05D003628 ORTHO05D004253 6.2e-31 140.2 422 31.5
Sp3g21980 Schrenkiella parvula HOM05D003628 ORTHO05D004253 6.2e-31 140.2 422 30.1
Eucgr.H00111 Eucalyptus grandis HOM05D003628 ORTHO05D004253 2.4e-30 138.3 424 32.3
MELO3C023064.2 Cucumis melo HOM05D003628 ORTHO05D004253 3.1e-30 137.9 422 29.9
Ciclev10004333m.g Citrus clementina HOM05D003628 ORTHO05D004253 4.0e-30 137.5 423 30.7
SMO116G0337 Selaginella moellendorffii HOM05D003628 ORTHO05D004253 6.9e-30 136.7 423 31.2
Sed0002438 Sechium edule HOM05D003628 ORTHO05D004253 9.0e-30 136.3 422 29.1
BcaC06g35665 Brassica carinata HOM05D003628 ORTHO05D004253 1.5e-29 135.6 424 29.5
DCAR_027362 Daucus carota HOM05D003628 ORTHO05D004253 1.5e-29 135.6 423 29.8
Haze_11526 Corylus avellana HOM05D003628 ORTHO05D004253 2.0e-29 135.2 422 31.8
HanXRQChr12g0359881 Helianthus annuus HOM05D003628 ORTHO05D004253 2.0e-29 135.2 415 30.8
Phvul.007G238700 Phaseolus vulgaris HOM05D003628 ORTHO05D004253 2.0e-29 135.2 422 31.3
HPP92_014197 Vanilla planifolia HOM05D003628 ORTHO05D004253 2.0e-29 135.2 421 29.5
BolC7t41696H Brassica oleracea HOM05D003628 ORTHO05D004253 2.6e-29 134.8 422 29.4
Potri.008G174800 Populus trichocarpa HOM05D003628 ORTHO05D004253 5.8e-29 133.7 424 32.1
HanXRQChr10g0311151 Helianthus annuus HOM05D003628 ORTHO05D004253 2.9e-28 131.3 419 29.6
HPP92_026454 Vanilla planifolia HOM05D003628 ORTHO05D004253 2.9e-28 131.3 413 29.3
CAN.G812.46 Capsicum annuum HOM05D003628 ORTHO05D004253 4.9e-28 130.6 425 30.1
Gohir.D09G195400 Gossypium hirsutum HOM05D003628 ORTHO05D004253 8.4e-28 129.8 423 30.3
A03p43510 Brassica napus HOM05D003628 ORTHO05D004253 1.1e-27 129.4 422 29.4
A07p08160 Brassica napus HOM05D003628 ORTHO05D004253 1.1e-27 129.4 477 28.7
Rhsim02G0049400 Rhododendron simsii HOM05D003628 ORTHO05D004253 1.9e-27 128.6 441 29.9
Sed0008500 Sechium edule HOM05D003628 ORTHO05D004253 1.9e-27 128.6 426 29.1
Thecc.04G217100 Theobroma cacao HOM05D003628 ORTHO05D004253 1.9e-27 128.6 424 30.2
Nn3g19840 Nelumbo nucifera HOM05D003628 ORTHO05D004253 3.2e-27 127.9 317 34.7
Carub.0003s2454 Capsella rubella HOM05D003628 ORTHO05D004253 5.4e-27 127.1 423 28.4
Gohir.A09G201200 Gossypium hirsutum HOM05D003628 ORTHO05D004253 9.3e-27 126.3 423 30.3
AT3G23980 Arabidopsis thaliana HOM05D003628 ORTHO05D004253 1.2e-26 125.9 423 29.8
CDE07G1740 Ceratophyllum demersum HOM05D003628 ORTHO05D004253 1.2e-26 125.9 430 30.5
AL3G39530 Arabidopsis lyrata HOM05D003628 ORTHO05D004253 2.1e-26 125.2 423 29.6
FvH4_4g05311 Fragaria vesca HOM05D003628 ORTHO05D004253 2.1e-26 125.2 422 29.6
TAR365G0848 Trochodendron aralioides HOM05D003628 ORTHO05D004253 2.1e-26 125.2 422 28.9
Solyc09g091120.3 Solanum lycopersicum HOM05D003628 ORTHO05D004253 2.7e-26 124.8 435 30.1
BraA03t13490Z Brassica rapa HOM05D003628 ORTHO05D004253 6.0e-26 123.6 422 28.4
FAN07G2212 Fragaria x ananassa HOM05D003628 ORTHO05D004253 6.0e-26 123.6 422 28.9
BcaC06g35667 Brassica carinata HOM05D003628 ORTHO05D004253 1.0e-25 122.9 405 28.4
Sopen09g034100 Solanum pennellii HOM05D003628 ORTHO05D004253 2.3e-25 121.7 435 29.9
Lj3A630T50 Lonicera japonica HOM05D003628 ORTHO05D004253 1.9e-24 118.6 343 30.0
C03p53470 Brassica napus HOM05D003628 ORTHO05D004253 8.1e-23 113.2 415 27.0
CARHR100260 Cardamine hirsuta HOM05D003628 ORTHO05D004253 1.1e-22 112.8 423 27.7
Lsat_1_v5_gn_5_148361 Lactuca sativa HOM05D003628 ORTHO05D004253 1.1e-22 112.8 429 27.5
vmacro15908 Vaccinium macrocarpon HOM05D003628 ORTHO05D004253 1.4e-22 112.5 420 29.5
Duzib151G0300 Durio zibethinus HOM05D003628 ORTHO05D004253 3.1e-22 111.3 424 28.5
BolC3t17608H Brassica oleracea HOM05D003628 ORTHO05D004253 4.0e-22 110.9 415 27.2
ClCG06G007410 Citrullus lanatus HOM05D003628 ORTHO05D004253 5.3e-22 110.5 425 28.2
Nitab4.5_0003287g0020 Nicotiana tabacum HOM05D003628 ORTHO05D004253 2.0e-21 108.6 148 41.9
BcaC01g03342 Brassica carinata HOM05D003628 ORTHO05D004253 7.6e-21 106.7 422 26.8
SEGI_10173 Sequoiadendron giganteum HOM05D003628 ORTHO05D004253 6.4e-20 103.6 416 27.6
Cpa.g.sc59.57 Carica papaya HOM05D003628 ORTHO05D004253 8.4e-20 103.2 133 42.9
Oeu012942.2 Olea europaea HOM05D003628 ORTHO05D004253 1.1e-19 102.8 126 51.6
Aqoxy1G00125 Aquilegia oxysepala HOM05D003628 ORTHO05D004253 5.4e-19 100.5 415 27.2
CDE04G0520 Ceratophyllum demersum HOM05D003628 ORTHO05D004253 7.1e-19 100.1 123 45.5
Hund12227 Selenicereus undatus HOM05D003628 ORTHO05D004253 2.1e-18 98.6 132 40.2
AagrBONN_evm.TU.Sc2ySwM_344.5018 Anthoceros agrestis HOM05D003628 ORTHO05D004253 3.0e-17 94.7 140 36.4
Prupe.1G054700 Prunus persica HOM05D003628 ORTHO05D004253 3.0e-17 94.7 423 27.4
Cfa014840 Carpinus fangiana HOM05D003628 ORTHO05D004253 1.5e-16 92.4 424 27.1
MD16G1232700 Malus domestica HOM05D003628 ORTHO05D004253 2.8e-15 88.2 423 26.5
FAN12G2520 Fragaria x ananassa HOM05D003628 ORTHO05D004253 3.1e-14 84.7 464 25.4
Oeu023151.1 Olea europaea HOM05D003628 ORTHO05D004253 9.0e-14 83.2 113 46.9
MD13G1227500 Malus domestica HOM05D003628 ORTHO05D004253 1.3e-09 69.3 100 38.0
Actinidia11385 Actinidia chinensis HOM05D003628 ORTHO05D004253 5.1e-09 67.4 107 43.9
Hma1.2p1_0112F.1_g055050 Hydrangea macrophylla HOM05D003628 ORTHO05D004253 3.3e-08 64.7 68 47.1
Gohir.D09G057732 Gossypium hirsutum HOM05D003628 ORTHO05D004253 4.8e-07 60.8 60 46.7
Cpa.g.sc59.56 Carica papaya HOM05D003628 ORTHO05D004253 6.2e-07 60.5 95 43.2
Gohir.D04G116566 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.8e-06 58.9 62 43.5


User provided reference genes

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