Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c20_1400 Physcomitrium patens HOM05D004705 ORTHO05D005595 0.0e+00 2243.8 1140 100.0
Pp3c20_1403 Physcomitrium patens HOM05D004705 ORTHO05D005595 0.0e+00 1734.2 898 99.1
Pp3c23_18290 Physcomitrium patens HOM05D004705 ORTHO05D005595 0.0e+00 1363.6 1128 65.4
Pp3c8_22450 Physcomitrium patens HOM05D004705 ORTHO05D005595 0.0e+00 1283.9 1130 63.7
Pp3c13_19170 Physcomitrium patens HOM05D004705 ORTHO05D005595 2.8e-235 819.7 1151 45.7
Pp3c8_15560 Physcomitrium patens HOM05D004705 ORTHO05D005595 1.0e-168 598.6 932 43.1
Pp3c23_2990 Physcomitrium patens HOM05D004705 ORTHO05D005595 3.9e-168 596.7 889 43.3
Pp3c24_17130 Physcomitrium patens HOM05D004705 ORTHO05D005595 2.9e-147 527.3 554 52.5
AagrBONN_evm.TU.Sc2ySwM_228.3613 Anthoceros agrestis HOM05D004705 ORTHO05D005595 2.1e-137 494.6 1029 35.8
SEGI_13982 Sequoiadendron giganteum HOM05D004705 ORTHO05D005595 8.4e-131 472.6 481 50.7
SEGI_27484 Sequoiadendron giganteum HOM05D004705 ORTHO05D005595 6.7e-104 383.3 480 46.0
ATR0083G057 Amborella trichopoda HOM05D004705 ORTHO05D005595 3.6e-89 334.3 485 40.4
Zm00001eb122560 Zea mays HOM05D004705 ORTHO05D005595 2.6e-84 318.2 482 40.9
Nn8g39334 Nelumbo nucifera HOM05D004705 ORTHO05D005595 4.5e-84 317.4 484 39.3
TAR626G1984 Trochodendron aralioides HOM05D004705 ORTHO05D005595 1.7e-83 315.5 485 37.7
Os01g0176500 Oryza sativa ssp. japonica HOM05D004705 ORTHO05D005595 3.8e-83 314.3 482 39.2
MBI04_g43364_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 6.5e-83 313.5 484 39.5
HanXRQChr02g0032571 Helianthus annuus HOM05D004705 ORTHO05D005595 4.7e-81 307.4 484 39.5
PGR031G3493 Punica granatum HOM05D004705 ORTHO05D005595 4.7e-81 307.4 482 38.8
PSO017G1026 Papaver somniferum HOM05D004705 ORTHO05D005595 3.0e-80 304.7 482 39.0
PSO170G5959 Papaver somniferum HOM05D004705 ORTHO05D005595 5.2e-80 303.9 484 38.6
GSVIVG01017208001 Vitis vinifera HOM05D004705 ORTHO05D005595 5.2e-80 303.9 484 39.0
Aqoxy7G01953 Aquilegia oxysepala HOM05D004705 ORTHO05D005595 8.8e-80 303.1 482 37.8
Manes.04G119400 Manihot esculenta HOM05D004705 ORTHO05D005595 1.5e-79 302.4 482 38.4
EL10Ac9g21966 Beta vulgaris HOM05D004705 ORTHO05D005595 2.0e-79 302.0 482 37.3
ECA247G3649 Erigeron canadensis HOM05D004705 ORTHO05D005595 3.3e-79 301.2 486 39.3
Potri.003G058600 Populus trichocarpa HOM05D004705 ORTHO05D005595 4.4e-79 300.8 482 38.2
ClCG07G012910 Citrullus lanatus HOM05D004705 ORTHO05D005595 5.7e-79 300.4 482 39.4
AUR62016408 Chenopodium quinoa HOM05D004705 ORTHO05D005595 9.7e-79 299.7 482 39.4
MELO3C012944.2 Cucumis melo HOM05D004705 ORTHO05D005595 1.3e-78 299.3 507 37.9
AUR62011594 Chenopodium quinoa HOM05D004705 ORTHO05D005595 1.7e-78 298.9 482 39.2
DCAR_025463 Daucus carota HOM05D004705 ORTHO05D005595 1.7e-78 298.9 485 38.6
CANSAT56G4120 Cannabis sativa HOM05D004705 ORTHO05D005595 2.2e-78 298.5 482 38.2
Medtr2g102680 Medicago truncatula HOM05D004705 ORTHO05D005595 6.3e-78 297.0 482 38.4
vmacro16932 Vaccinium macrocarpon HOM05D004705 ORTHO05D005595 6.3e-78 297.0 485 38.1
Glyma.15G011700 Glycine max HOM05D004705 ORTHO05D005595 8.2e-78 296.6 482 38.4
CsaV3_3G026670 Cucumis sativus L. HOM05D004705 ORTHO05D005595 1.1e-77 296.2 507 37.7
Manes.11G049500 Manihot esculenta HOM05D004705 ORTHO05D005595 1.1e-77 296.2 483 38.5
RcHm_v2.0_Chr2g0137071 Rosa chinensis HOM05D004705 ORTHO05D005595 1.1e-77 296.2 482 38.8
Potri.001G175500 Populus trichocarpa HOM05D004705 ORTHO05D005595 1.4e-77 295.8 482 38.4
Lsat_1_v5_gn_1_33801 Lactuca sativa HOM05D004705 ORTHO05D005595 1.8e-77 295.4 484 38.2
Hund00574 Selenicereus undatus HOM05D004705 ORTHO05D005595 1.8e-77 295.4 482 38.8
Ciclev10024977m.g Citrus clementina HOM05D004705 ORTHO05D005595 2.4e-77 295.0 559 36.5
TPR.G37249 Trifolium pratense HOM05D004705 ORTHO05D005595 2.4e-77 295.0 482 37.8
FAN14G4493 Fragaria x ananassa HOM05D004705 ORTHO05D005595 3.1e-77 294.7 482 39.6
CDE01G0719 Ceratophyllum demersum HOM05D004705 ORTHO05D005595 4.1e-77 294.3 564 35.5
FvH4_6g30700 Fragaria vesca HOM05D004705 ORTHO05D005595 4.1e-77 294.3 482 39.6
Sed0012410 Sechium edule HOM05D004705 ORTHO05D005595 4.1e-77 294.3 482 38.6
Solyc03g119940.3 Solanum lycopersicum HOM05D004705 ORTHO05D005595 7.0e-77 293.5 484 37.6
CAN.G438.96 Capsicum annuum HOM05D004705 ORTHO05D005595 9.1e-77 293.1 485 38.1
FAN05G0816 Fragaria x ananassa HOM05D004705 ORTHO05D005595 9.1e-77 293.1 482 38.4
SalBow5G4930 Salvia bowleyana HOM05D004705 ORTHO05D005595 9.1e-77 293.1 482 37.6
Sopen03g038820 Solanum pennellii HOM05D004705 ORTHO05D005595 9.1e-77 293.1 484 37.8
Prupe.3G077300 Prunus persica HOM05D004705 ORTHO05D005595 1.6e-76 292.4 483 37.1
TAR383G1056 Trochodendron aralioides HOM05D004705 ORTHO05D005595 1.6e-76 292.4 484 37.2
FAN02G3197 Fragaria x ananassa HOM05D004705 ORTHO05D005595 2.7e-76 291.6 482 39.0
FAN09G0848 Fragaria x ananassa HOM05D004705 ORTHO05D005595 2.7e-76 291.6 482 39.6
Lalb_Chr22g0351091 Lupinus albus HOM05D004705 ORTHO05D005595 2.7e-76 291.6 482 36.5
PGSC0003DMG400005697 Solanum tuberosum HOM05D004705 ORTHO05D005595 2.7e-76 291.6 484 38.0
Thecc.06G077700 Theobroma cacao HOM05D004705 ORTHO05D005595 7.7e-76 290.0 482 36.9
Dinv38075 Davidia involucrata HOM05D004705 ORTHO05D005595 1.0e-75 289.7 485 37.9
Peaxi162Scf00015g00532 Petunia axillaris HOM05D004705 ORTHO05D005595 1.0e-75 289.7 484 38.2
SGA_v2.0_scaffold153G36966 Striga asiatica HOM05D004705 ORTHO05D005595 1.3e-75 289.3 484 37.8
BraA01t03898Z Brassica rapa HOM05D004705 ORTHO05D005595 1.7e-75 288.9 479 38.0
Lalb_Chr24g0395661 Lupinus albus HOM05D004705 ORTHO05D005595 1.7e-75 288.9 482 36.3
CSS0020826 Camellia sinensis var. sinensis HOM05D004705 ORTHO05D005595 2.2e-75 288.5 485 37.5
Cc04_g03760 Coffea canephora HOM05D004705 ORTHO05D005595 2.9e-75 288.1 485 37.3
Lj3g0018532 Lotus japonicus HOM05D004705 ORTHO05D005595 3.8e-75 287.7 482 36.7
THA.LOC104818041 Tarenaya hassleriana HOM05D004705 ORTHO05D005595 3.8e-75 287.7 482 37.1
Atru.chr1.3167 Acer truncatum HOM05D004705 ORTHO05D005595 5.0e-75 287.3 482 37.3
Nn2g11880 Nelumbo nucifera HOM05D004705 ORTHO05D005595 5.0e-75 287.3 427 40.5
Sp3g13840 Schrenkiella parvula HOM05D004705 ORTHO05D005595 5.0e-75 287.3 479 37.2
QL05p026953 Quercus lobata HOM05D004705 ORTHO05D005595 6.5e-75 287.0 482 37.3
A01p38480 Brassica napus HOM05D004705 ORTHO05D005595 1.1e-74 286.2 479 38.6
BolC1t04836H Brassica oleracea HOM05D004705 ORTHO05D005595 1.1e-74 286.2 479 37.6
CSS0001459 Camellia sinensis var. sinensis HOM05D004705 ORTHO05D005595 1.1e-74 286.2 485 37.3
Sabra01G0137000 Salix brachista HOM05D004705 ORTHO05D005595 1.1e-74 286.2 462 38.5
Gorai.002G057500 Gossypium raimondii HOM05D004705 ORTHO05D005595 1.5e-74 285.8 482 37.1
MD17G1201400 Malus domestica HOM05D004705 ORTHO05D005595 1.5e-74 285.8 478 39.1
Psat5g299960 Pisum sativum HOM05D004705 ORTHO05D005595 1.5e-74 285.8 483 36.6
C01p48810 Brassica napus HOM05D004705 ORTHO05D005595 1.9e-74 285.4 479 37.6
Gohir.D03G064900 Gossypium hirsutum HOM05D004705 ORTHO05D005595 1.9e-74 285.4 482 37.1
BcaC09g48528 Brassica carinata HOM05D004705 ORTHO05D005595 2.5e-74 285.0 479 37.8
arahy.Tifrunner.gnm1.ann1.1G4SNU Arachis hypogaea HOM05D004705 ORTHO05D005595 5.5e-74 283.9 498 36.1
Thhalv10020202m.g Eutrema salsugineum HOM05D004705 ORTHO05D005595 5.5e-74 283.9 480 37.5
AL3G28180 Arabidopsis lyrata HOM05D004705 ORTHO05D005595 7.2e-74 283.5 479 38.0
AT3G15550 Arabidopsis thaliana HOM05D004705 ORTHO05D005595 7.2e-74 283.5 479 37.8
Aa31LG8G2800 Aethionema arabicum HOM05D004705 ORTHO05D005595 9.4e-74 283.1 552 35.7
BraA05t22205Z Brassica rapa HOM05D004705 ORTHO05D005595 9.4e-74 283.1 479 36.7
Oeu051920.1 Olea europaea HOM05D004705 ORTHO05D005595 9.4e-74 283.1 482 36.5
BcaB06g29595 Brassica carinata HOM05D004705 ORTHO05D005595 1.2e-73 282.7 479 37.4
Duzib160G0698 Durio zibethinus HOM05D004705 ORTHO05D005595 1.6e-73 282.3 482 36.3
BolC5t33833H Brassica oleracea HOM05D004705 ORTHO05D005595 2.1e-73 282.0 484 36.8
A05p33830 Brassica napus HOM05D004705 ORTHO05D005595 2.7e-73 281.6 479 37.4
Ca_01096_v3 Cicer arietinum L. HOM05D004705 ORTHO05D005595 8.0e-73 280.0 483 37.1
BcaC05g28954 Brassica carinata HOM05D004705 ORTHO05D005595 1.0e-72 279.6 569 34.8
Gohir.A02G124100 Gossypium hirsutum HOM05D004705 ORTHO05D005595 1.0e-72 279.6 555 35.1
C05p51460 Brassica napus HOM05D004705 ORTHO05D005595 1.4e-72 279.3 569 34.8
Dinv30551 Davidia involucrata HOM05D004705 ORTHO05D005595 1.4e-72 279.3 453 37.1
Duzib235G0494 Durio zibethinus HOM05D004705 ORTHO05D005595 1.4e-72 279.3 483 36.4
Carub.0003s1530 Capsella rubella HOM05D004705 ORTHO05D005595 2.3e-72 278.5 572 34.3
BcaB04g20914 Brassica carinata HOM05D004705 ORTHO05D005595 3.0e-72 278.1 482 36.3
CARHR090640 Cardamine hirsuta HOM05D004705 ORTHO05D005595 5.2e-72 277.3 479 36.1
Lalb_Chr25g0279551 Lupinus albus HOM05D004705 ORTHO05D005595 8.8e-72 276.6 541 33.8
Phvul.005G173800 Phaseolus vulgaris HOM05D004705 ORTHO05D005595 1.2e-71 276.2 482 36.3
arahy.Tifrunner.gnm1.ann1.WXP04W Arachis hypogaea HOM05D004705 ORTHO05D005595 1.5e-71 275.8 498 35.9
Sc12g0008970 Simmondsia chinensis HOM05D004705 ORTHO05D005595 2.6e-71 275.0 482 36.7
CiPaw.01G242500 Carya illinoinensis HOM05D004705 ORTHO05D005595 5.7e-71 273.9 482 35.9
Lj5A66T57 Lonicera japonica HOM05D004705 ORTHO05D005595 9.8e-71 273.1 484 36.8
MSTRG.20727 Avicennia marina HOM05D004705 ORTHO05D005595 1.3e-70 272.7 484 35.5
RhsimUnG0009400 Rhododendron simsii HOM05D004705 ORTHO05D005595 1.3e-70 272.7 574 33.8
unitig_26.g8885 Utricularia gibba HOM05D004705 ORTHO05D005595 2.8e-70 271.6 538 34.4
Cfa002032 Carpinus fangiana HOM05D004705 ORTHO05D005595 1.4e-69 269.2 483 35.4
Rhsim12G0195000 Rhododendron simsii HOM05D004705 ORTHO05D005595 4.1e-69 267.7 574 33.4
MSTRG.17159 Avicennia marina HOM05D004705 ORTHO05D005595 9.1e-69 266.5 479 35.1
Haze_16487 Corylus avellana HOM05D004705 ORTHO05D005595 9.1e-69 266.5 482 34.6
THA.LOC104812485 Tarenaya hassleriana HOM05D004705 ORTHO05D005595 1.2e-68 266.2 573 34.7
TWI75G0140 Tripterygium wilfordii HOM05D004705 ORTHO05D005595 2.0e-68 265.4 483 37.1
Oeu000022.1 Olea europaea HOM05D004705 ORTHO05D005595 7.7e-68 263.5 490 35.1
Nitab4.5_0004817g0040 Nicotiana tabacum HOM05D004705 ORTHO05D005595 1.3e-67 262.7 485 35.7
Glyma.13G362100 Glycine max HOM05D004705 ORTHO05D005595 1.1e-66 259.6 482 35.3
Eucgr.J03029 Eucalyptus grandis HOM05D004705 ORTHO05D005595 3.6e-65 254.6 451 37.0
Nitab4.5_0000410g0340 Nicotiana tabacum HOM05D004705 ORTHO05D005595 2.0e-63 248.8 485 34.8
unitig_61.g26415 Utricularia gibba HOM05D004705 ORTHO05D005595 6.3e-62 243.8 489 34.4
Migut.B01589 Erythranthe guttata HOM05D004705 ORTHO05D005595 2.3e-59 235.3 407 37.3
SMO147G0411 Selaginella moellendorffii HOM05D004705 ORTHO05D005595 2.3e-59 235.3 190 57.4
VMungo1080G1183 Vigna mungo HOM05D004705 ORTHO05D005595 5.6e-58 230.7 482 33.4
Cpa.g.c32383.1 Carica papaya HOM05D004705 ORTHO05D005595 4.7e-57 227.6 392 38.0
arahy.Tifrunner.gnm1.ann1.HFN88V Arachis hypogaea HOM05D004705 ORTHO05D005595 6.1e-57 227.3 577 30.8
Ah.01g021140 Amaranthus hybridus HOM05D004705 ORTHO05D005595 1.5e-55 222.6 184 56.0
COL.COLO4_12857 Corchorus olitorius HOM05D004705 ORTHO05D005595 2.4e-45 188.7 484 30.2
arahy.Tifrunner.gnm1.ann1.AD4PBH Arachis hypogaea HOM05D004705 ORTHO05D005595 2.5e-42 178.7 577 28.1
MBI01_g15493_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 4.3e-34 151.4 550 26.0
Actinidia16007 Actinidia chinensis HOM05D004705 ORTHO05D005595 1.1e-32 146.7 257 36.6
CDE02G1329 Ceratophyllum demersum HOM05D004705 ORTHO05D005595 8.4e-22 110.5 481 26.2
MBI04_g47892_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 1.8e-16 92.8 142 40.8
Actinidia08822 Actinidia chinensis HOM05D004705 ORTHO05D005595 6.4e-14 84.3 72 55.6
SHI09686 Sapria himalayana HOM05D004705 ORTHO05D005595 4.8e-09 68.2 348 26.4
BcaC09g48527 Brassica carinata HOM05D004705 ORTHO05D005595 8.1e-09 67.4 87 36.8
MBI04_g47893_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 2.9e-06 58.9 45 53.3
Pp3c13_1060 Physcomitrium patens HOM05D001027 ORTHO05D000844 6.4e-06 57.8 80 38.8
Pp3c13_1310 Physcomitrium patens HOM05D001027 ORTHO05D000844 6.4e-06 57.8 80 38.8
Sc18g0002280 Simmondsia chinensis HOM05D001027 ORTHO05D000844 8.4e-06 57.4 62 45.2


User provided reference genes

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