Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c20_1230 Physcomitrium patens HOM05D004790 ORTHO05D005678 5.4e-245 850.5 417 100.0
Pp3c8_24840 Physcomitrium patens HOM05D004790 ORTHO05D005678 2.0e-122 443.4 522 49.2
Pp3c23_21860 Physcomitrium patens HOM05D004790 ORTHO05D005678 1.6e-119 433.7 503 49.1
Mapoly0001s0243 Marchantia polymorpha HOM05D004790 ORTHO05D005678 4.4e-37 159.8 355 33.8
SMO111G0050 Selaginella moellendorffii HOM05D004790 ORTHO05D005678 6.4e-20 102.8 363 26.4
BraA08t33977Z Brassica rapa HOM05D004790 ORTHO05D005678 4.1e-19 100.1 375 25.9
PGR042G3525 Punica granatum HOM05D004790 ORTHO05D005678 2.1e-18 97.8 376 23.9
CAN.G1655.2 Capsicum annuum HOM05D004790 ORTHO05D005678 2.7e-18 97.4 378 25.4
Nitab4.5_0007168g0010 Nicotiana tabacum HOM05D004790 ORTHO05D005678 2.7e-18 97.4 387 25.6
PGSC0003DMG400021668 Solanum tuberosum HOM05D004790 ORTHO05D005678 3.5e-18 97.1 388 27.1
A08p20170 Brassica napus HOM05D004790 ORTHO05D005678 4.6e-18 96.7 375 25.6
Nitab4.5_0000585g0100 Nicotiana tabacum HOM05D004790 ORTHO05D005678 4.6e-18 96.7 386 26.4
BcaC06g32632 Brassica carinata HOM05D004790 ORTHO05D005678 6.0e-18 96.3 382 27.7
SEGI_15900 Sequoiadendron giganteum HOM05D004790 ORTHO05D005678 1.0e-17 95.5 357 24.6
SEGI_40185 Sequoiadendron giganteum HOM05D004790 ORTHO05D005678 1.0e-17 95.5 357 24.6
A03p57970 Brassica napus HOM05D004790 ORTHO05D005678 1.3e-17 95.1 379 25.6
BolC8t48743H Brassica oleracea HOM05D004790 ORTHO05D005678 1.3e-17 95.1 372 24.7
BraA03t14860Z Brassica rapa HOM05D004790 ORTHO05D005678 1.3e-17 95.1 379 25.6
SHI10412 Sapria himalayana HOM05D004790 ORTHO05D005678 1.3e-17 95.1 373 25.7
DCAR_013003 Daucus carota HOM05D004790 ORTHO05D005678 1.7e-17 94.7 439 23.7
Thecc.02G178300 Theobroma cacao HOM05D004790 ORTHO05D005678 1.7e-17 94.7 377 23.3
Medtr2g090285 Medicago truncatula HOM05D004790 ORTHO05D005678 2.3e-17 94.4 377 23.3
C08p10710 Brassica napus HOM05D004790 ORTHO05D005678 3.0e-17 94.0 369 25.7
Thhalv10024944m.g Eutrema salsugineum HOM05D004790 ORTHO05D005678 3.0e-17 94.0 382 25.1
Sp7g26220 Schrenkiella parvula HOM05D004790 ORTHO05D005678 3.9e-17 93.6 382 25.4
Peaxi162Scf00206g00710 Petunia axillaris HOM05D004790 ORTHO05D005678 5.1e-17 93.2 385 23.6
AL7G24340 Arabidopsis lyrata HOM05D004790 ORTHO05D005678 8.6e-17 92.4 389 24.9
C07p56090 Brassica napus HOM05D004790 ORTHO05D005678 8.6e-17 92.4 379 25.6
Solyc10g008420.3 Solanum lycopersicum HOM05D004790 ORTHO05D005678 8.6e-17 92.4 391 27.1
TAR627G0452 Trochodendron aralioides HOM05D004790 ORTHO05D005678 8.6e-17 92.4 398 24.1
Aa31LG11G10330 Aethionema arabicum HOM05D004790 ORTHO05D005678 1.1e-16 92.0 381 25.5
Cpa.g.sc34.151 Carica papaya HOM05D004790 ORTHO05D005678 1.1e-16 92.0 371 24.8
COL.COLO4_30176 Corchorus olitorius HOM05D004790 ORTHO05D005678 1.1e-16 92.0 372 23.9
unitig_26.g9948 Utricularia gibba HOM05D004790 ORTHO05D005678 1.1e-16 92.0 391 23.5
Carub.0007s1250 Capsella rubella HOM05D004790 ORTHO05D005678 1.5e-16 91.7 390 24.9
Lj3g0014290 Lotus japonicus HOM05D004790 ORTHO05D005678 1.5e-16 91.7 388 25.3
Rhsim06G0143900 Rhododendron simsii HOM05D004790 ORTHO05D005678 1.5e-16 91.7 432 23.4
Duzib052G0346 Durio zibethinus HOM05D004790 ORTHO05D005678 1.9e-16 91.3 390 23.6
BolC7t46084H Brassica oleracea HOM05D004790 ORTHO05D005678 2.5e-16 90.9 379 25.6
Gohir.D04G143900 Gossypium hirsutum HOM05D004790 ORTHO05D005678 2.5e-16 90.9 379 24.0
Gorai.012G129400 Gossypium raimondii HOM05D004790 ORTHO05D005678 2.5e-16 90.9 379 24.0
Sopen10g004250 Solanum pennellii HOM05D004790 ORTHO05D005678 3.3e-16 90.5 389 26.2
HanXRQChr17g0553511 Helianthus annuus HOM05D004790 ORTHO05D005678 4.3e-16 90.1 380 24.7
AT4G28260 Arabidopsis thaliana HOM05D004790 ORTHO05D005678 5.6e-16 89.7 389 25.4
Duzib248G1314 Durio zibethinus HOM05D004790 ORTHO05D005678 5.6e-16 89.7 375 25.1
BcaB03g12561 Brassica carinata HOM05D004790 ORTHO05D005678 7.3e-16 89.4 373 25.2
SGA_v2.0_scaffold109G31134 Striga asiatica HOM05D004790 ORTHO05D005678 7.3e-16 89.4 395 25.1
Actinidia11039 Actinidia chinensis HOM05D004790 ORTHO05D005678 9.5e-16 89.0 399 23.1
CARHR235970 Cardamine hirsuta HOM05D004790 ORTHO05D005678 9.5e-16 89.0 392 25.5
MSTRG.12822 Avicennia marina HOM05D004790 ORTHO05D005678 1.2e-15 88.6 394 24.6
Cc05_g07060 Coffea canephora HOM05D004790 ORTHO05D005678 1.2e-15 88.6 380 25.0
Manes.13G147300 Manihot esculenta HOM05D004790 ORTHO05D005678 1.2e-15 88.6 375 23.5
Gohir.A04G104200 Gossypium hirsutum HOM05D004790 ORTHO05D005678 1.6e-15 88.2 379 23.7
Atru.chr6.3004 Acer truncatum HOM05D004790 ORTHO05D005678 2.8e-15 87.4 392 23.0
BcaC06g32633 Brassica carinata HOM05D004790 ORTHO05D005678 2.8e-15 87.4 383 27.2
Ah.01g015210 Amaranthus hybridus HOM05D004790 ORTHO05D005678 4.7e-15 86.7 392 23.7
Ca_01506_v3 Cicer arietinum L. HOM05D004790 ORTHO05D005678 1.1e-14 85.5 380 23.4
Potri.013G133200 Populus trichocarpa HOM05D004790 ORTHO05D005678 1.8e-14 84.7 379 23.0
SalBow7G3762 Salvia bowleyana HOM05D004790 ORTHO05D005678 1.8e-14 84.7 395 24.6
Glyma.13G298000 Glycine max HOM05D004790 ORTHO05D005678 2.4e-14 84.3 391 23.8
Lsat_1_v5_gn_8_133340 Lactuca sativa HOM05D004790 ORTHO05D005678 3.1e-14 84.0 390 25.1
Lj1A724T21 Lonicera japonica HOM05D004790 ORTHO05D005678 3.1e-14 84.0 389 23.7
Manes.12G090600 Manihot esculenta HOM05D004790 ORTHO05D005678 3.1e-14 84.0 383 23.2
Gorai.013G075500 Gossypium raimondii HOM05D004790 ORTHO05D005678 4.0e-14 83.6 369 24.1
CiPaw.03G175600 Carya illinoinensis HOM05D004790 ORTHO05D005678 5.2e-14 83.2 392 26.3
Ciclev10014904m.g Citrus clementina HOM05D004790 ORTHO05D005678 5.2e-14 83.2 393 24.7
TPR.G6443 Trifolium pratense HOM05D004790 ORTHO05D005678 5.2e-14 83.2 394 23.9
Dinv23649 Davidia involucrata HOM05D004790 ORTHO05D005678 8.9e-14 82.4 399 23.6
Sed0002654 Sechium edule HOM05D004790 ORTHO05D005678 1.2e-13 82.0 398 22.4
THA.LOC104804061 Tarenaya hassleriana HOM05D004790 ORTHO05D005678 1.5e-13 81.6 382 23.8
Sabra19G0112400 Salix brachista HOM05D004790 ORTHO05D005678 2.6e-13 80.9 387 23.3
Sabra13G0113200 Salix brachista HOM05D004790 ORTHO05D005678 3.4e-13 80.5 379 22.7
ClCG02G017590 Citrullus lanatus HOM05D004790 ORTHO05D005678 4.4e-13 80.1 393 23.9
ATR0680G165 Amborella trichopoda HOM05D004790 ORTHO05D005678 7.6e-13 79.3 370 24.1
MELO3C013614.2 Cucumis melo HOM05D004790 ORTHO05D005678 7.6e-13 79.3 390 24.4
Glyma.12G203700 Glycine max HOM05D004790 ORTHO05D005678 7.6e-13 79.3 393 23.4
Sabra19G0111100 Salix brachista HOM05D004790 ORTHO05D005678 7.6e-13 79.3 382 23.6
Eucgr.A01811 Eucalyptus grandis HOM05D004790 ORTHO05D005678 9.9e-13 79.0 391 25.8
QL08p038483 Quercus lobata HOM05D004790 ORTHO05D005678 9.9e-13 79.0 389 23.4
VMungo1080G1693 Vigna mungo HOM05D004790 ORTHO05D005678 1.3e-12 78.6 387 23.3
RcHm_v2.0_Chr2g0126141 Rosa chinensis HOM05D004790 ORTHO05D005678 1.7e-12 78.2 400 24.8
CsaV3_6G012960 Cucumis sativus L. HOM05D004790 ORTHO05D005678 2.9e-12 77.4 390 24.1
SalBow7G1856 Salvia bowleyana HOM05D004790 ORTHO05D005678 2.9e-12 77.4 434 22.8
Aqoxy1G02499 Aquilegia oxysepala HOM05D004790 ORTHO05D005678 3.8e-12 77.0 363 23.7
MD09G1249000 Malus domestica HOM05D004790 ORTHO05D005678 3.8e-12 77.0 392 24.2
Hma1.2p1_0213F.1_g090370 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 4.9e-12 76.6 408 22.8
Lsat_1_v5_gn_4_65660 Lactuca sativa HOM05D004790 ORTHO05D005678 4.9e-12 76.6 364 23.1
Haze_13149 Corylus avellana HOM05D004790 ORTHO05D005678 6.4e-12 76.3 388 22.9
Migut.H01089 Erythranthe guttata HOM05D004790 ORTHO05D005678 6.4e-12 76.3 398 24.4
Cfa014604 Carpinus fangiana HOM05D004790 ORTHO05D005678 8.4e-12 75.9 389 23.4
Oeu029923.1 Olea europaea HOM05D004790 ORTHO05D005678 1.4e-11 75.1 391 22.8
Phvul.005G104500 Phaseolus vulgaris HOM05D004790 ORTHO05D005678 1.4e-11 75.1 392 23.2
CSS0024255 Camellia sinensis var. sinensis HOM05D004790 ORTHO05D005678 1.9e-11 74.7 408 21.8
CSS0033247 Camellia sinensis var. sinensis HOM05D004790 ORTHO05D005678 1.9e-11 74.7 408 21.8
Lalb_Chr14g0366851 Lupinus albus HOM05D004790 ORTHO05D005678 2.4e-11 74.3 372 23.4
vmacro12295 Vaccinium macrocarpon HOM05D004790 ORTHO05D005678 2.4e-11 74.3 416 21.6
EL10Ac9g20754 Beta vulgaris HOM05D004790 ORTHO05D005678 3.2e-11 73.9 394 23.9
Hund01104 Selenicereus undatus HOM05D004790 ORTHO05D005678 3.2e-11 73.9 401 22.4
MBI19_g19847_MAGBIO Magnolia biondii HOM05D004790 ORTHO05D005678 4.1e-11 73.6 405 20.5
MD17G1241500 Malus domestica HOM05D004790 ORTHO05D005678 4.1e-11 73.6 381 22.8
PSO675G6339 Papaver somniferum HOM05D004790 ORTHO05D005678 5.4e-11 73.2 395 23.3
Actinidia09859 Actinidia chinensis HOM05D004790 ORTHO05D005678 7.1e-11 72.8 413 22.8
CANSAT11G0193 Cannabis sativa HOM05D004790 ORTHO05D005678 7.1e-11 72.8 412 21.6
Gohir.D13G066200 Gossypium hirsutum HOM05D004790 ORTHO05D005678 1.2e-10 72.0 368 23.6
AagrBONN_evm.TU.Sc2ySwM_228.2348 Anthoceros agrestis HOM05D004790 ORTHO05D007542 1.6e-10 71.6 59 52.5
PSO541G2110 Papaver somniferum HOM05D004790 ORTHO05D005678 2.1e-10 71.2 393 21.6
Prupe.3G136400 Prunus persica HOM05D004790 ORTHO05D005678 2.1e-10 71.2 408 21.1
Oeu045846.1 Olea europaea HOM05D004790 ORTHO05D005678 2.7e-10 70.9 390 23.1
TWI36G0090 Tripterygium wilfordii HOM05D004790 ORTHO05D005678 3.5e-10 70.5 393 21.4
FvH4_6g26160 Fragaria vesca HOM05D004790 ORTHO05D005678 4.6e-10 70.1 403 20.8
Lalb_Chr22g0356521 Lupinus albus HOM05D004790 ORTHO05D005678 4.6e-10 70.1 371 21.3
Nn1g04055 Nelumbo nucifera HOM05D004790 ORTHO05D005678 4.6e-10 70.1 416 22.4
Sc12g0003010 Simmondsia chinensis HOM05D004790 ORTHO05D005678 4.6e-10 70.1 394 23.6
GSVIVG01020532001 Vitis vinifera HOM05D004790 ORTHO05D005678 6.0e-10 69.7 97 36.1
Os10g0500600 Oryza sativa ssp. japonica HOM05D004790 ORTHO05D005678 1.0e-09 68.9 397 24.7
FAN02G0059 Fragaria x ananassa HOM05D004790 ORTHO05D005678 3.0e-09 67.4 397 22.9
arahy.Tifrunner.gnm1.ann1.DEE7JK Arachis hypogaea HOM05D004790 ORTHO05D005678 8.7e-09 65.9 385 21.6
arahy.Tifrunner.gnm1.ann1.1EW4X0 Arachis hypogaea HOM05D004790 ORTHO05D005678 1.1e-08 65.5 387 21.4
Aa31LG11G14100 Aethionema arabicum HOM05D004790 ORTHO05D005678 1.9e-08 64.7 356 23.3
Zm00001eb044450 Zea mays HOM05D004790 ORTHO05D005678 1.9e-08 64.7 64 40.6
Zm00001eb044390 Zea mays HOM05D004790 ORTHO05D005678 2.5e-08 64.3 64 40.6
Hma1.2p1_1201F.1_g266610 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 9.6e-08 62.4 355 23.7
FAN05G3153 Fragaria x ananassa HOM05D004790 ORTHO05D005678 1.2e-07 62.0 379 22.4
AUR62037353 Chenopodium quinoa HOM05D004790 ORTHO05D005678 1.6e-07 61.6 387 21.7
CDE02G0639 Ceratophyllum demersum HOM05D004790 ORTHO05D005678 2.1e-07 61.2 64 35.9
FAN05G5699 Fragaria x ananassa HOM05D004790 ORTHO05D005678 3.6e-07 60.5 64 35.9
Hma1.2p1_3039F.1_g331970 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 4.7e-07 60.1 63 44.4
Psat5g271320 Pisum sativum HOM05D004790 ORTHO05D005678 8.1e-07 59.3 63 38.1


User provided reference genes

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