Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c20_11540 Physcomitrium patens HOM05D004535 ORTHO05D005341 0.0e+00 3566.5 1837 100.0
Mapoly0071s0029 Marchantia polymorpha HOM05D004535 ORTHO05D005341 0.0e+00 1697.9 1929 49.6
AagrBONN_evm.TU.Sc2ySwM_228.5886 Anthoceros agrestis HOM05D004535 ORTHO05D005341 0.0e+00 1684.8 1866 49.5
Mapoly0069s0005 Marchantia polymorpha HOM05D004535 ORTHO05D005341 0.0e+00 1571.6 1882 46.6
Pp3c15_5520 Physcomitrium patens HOM05D004535 ORTHO05D005341 0.0e+00 1522.7 1836 46.6
TAR627G0331 Trochodendron aralioides HOM05D004535 ORTHO05D005341 0.0e+00 1438.3 1861 43.4
Hma1.2p1_0193F.1_g084240 Hydrangea macrophylla HOM05D004535 ORTHO05D005341 0.0e+00 1434.1 1854 42.7
GSVIVG01014769001 Vitis vinifera HOM05D004535 ORTHO05D005341 0.0e+00 1431.4 1854 43.2
HanXRQChr03g0079281 Helianthus annuus HOM05D004535 ORTHO05D005341 0.0e+00 1430.6 1856 43.3
MD11G1042000 Malus domestica HOM05D004535 ORTHO05D005341 0.0e+00 1429.5 1855 43.0
Atru.chr2.3782 Acer truncatum HOM05D004535 ORTHO05D005341 0.0e+00 1425.2 1856 42.8
Dinv19653 Davidia involucrata HOM05D004535 ORTHO05D005341 0.0e+00 1425.2 1860 43.2
Eucgr.F02001 Eucalyptus grandis HOM05D004535 ORTHO05D005341 0.0e+00 1421.8 1854 42.8
FAN16G2454 Fragaria x ananassa HOM05D004535 ORTHO05D005341 0.0e+00 1421.8 1859 42.8
ATR0751G071 Amborella trichopoda HOM05D004535 ORTHO05D005341 0.0e+00 1421.0 1856 43.3
FAN21G2952 Fragaria x ananassa HOM05D004535 ORTHO05D005341 0.0e+00 1420.6 1860 42.5
ECA240G2049 Erigeron canadensis HOM05D004535 ORTHO05D005341 0.0e+00 1419.8 1850 42.9
PSO210G5731 Papaver somniferum HOM05D004535 ORTHO05D005341 0.0e+00 1419.8 1853 43.1
Prupe.6G032900 Prunus persica HOM05D004535 ORTHO05D005341 0.0e+00 1419.1 1856 42.6
FAN25G2892 Fragaria x ananassa HOM05D004535 ORTHO05D005341 0.0e+00 1418.3 1858 42.8
FAN11G1653 Fragaria x ananassa HOM05D004535 ORTHO05D005341 0.0e+00 1417.5 1859 42.8
CSS0018371 Camellia sinensis var. sinensis HOM05D004535 ORTHO05D005341 0.0e+00 1415.2 1855 42.8
MD03G1040600 Malus domestica HOM05D004535 ORTHO05D005341 0.0e+00 1415.2 1854 42.6
Psat5g164120 Pisum sativum HOM05D004535 ORTHO05D005341 0.0e+00 1414.4 1856 41.7
Manes.01G005500 Manihot esculenta HOM05D004535 ORTHO05D005341 0.0e+00 1414.1 1856 42.6
CANSAT11G1644 Cannabis sativa HOM05D004535 ORTHO05D005341 0.0e+00 1412.5 1855 42.3
HanXRQChr13g0409231 Helianthus annuus HOM05D004535 ORTHO05D005341 0.0e+00 1411.0 1850 42.9
Medtr3g461520 Medicago truncatula HOM05D004535 ORTHO05D005341 0.0e+00 1409.8 1855 41.5
RcHm_v2.0_Chr5g0075021 Rosa chinensis HOM05D004535 ORTHO05D005341 0.0e+00 1409.8 1856 42.2
CiPaw.11G209600 Carya illinoinensis HOM05D004535 ORTHO05D005341 0.0e+00 1407.1 1864 42.8
TWI38G2299 Tripterygium wilfordii HOM05D004535 ORTHO05D005341 0.0e+00 1406.7 1858 42.4
Rhsim04G0008600 Rhododendron simsii HOM05D004535 ORTHO05D005341 0.0e+00 1404.4 1869 42.2
TPR.G14720 Trifolium pratense HOM05D004535 ORTHO05D005341 0.0e+00 1404.0 1855 41.3
Sc20g0000040 Simmondsia chinensis HOM05D004535 ORTHO05D005341 0.0e+00 1397.1 1853 42.1
Potri.001G470600 Populus trichocarpa HOM05D004535 ORTHO05D005341 0.0e+00 1395.2 1856 42.0
Ciclev10007234m.g Citrus clementina HOM05D004535 ORTHO05D005341 0.0e+00 1393.6 1861 42.1
Lj1C898T24 Lonicera japonica HOM05D004535 ORTHO05D005341 0.0e+00 1393.6 1874 42.5
Lalb_Chr18g0050431 Lupinus albus HOM05D004535 ORTHO05D005341 0.0e+00 1393.6 1855 41.6
PGR083G0052 Punica granatum HOM05D004535 ORTHO05D005341 0.0e+00 1392.5 1855 41.9
AUR62035634 Chenopodium quinoa HOM05D004535 ORTHO05D005341 0.0e+00 1391.7 1855 42.0
Glyma.18G071500 Glycine max HOM05D004535 ORTHO05D005341 0.0e+00 1391.3 1856 42.0
Glyma.08G336400 Glycine max HOM05D004535 ORTHO05D005341 0.0e+00 1390.9 1857 41.6
Solyc07g066030.4 Solanum lycopersicum HOM05D004535 ORTHO05D005341 0.0e+00 1390.2 1857 41.8
Sopen07g034220 Solanum pennellii HOM05D004535 ORTHO05D005341 0.0e+00 1388.2 1857 41.8
Gorai.009G454100 Gossypium raimondii HOM05D004535 ORTHO05D005341 0.0e+00 1387.5 1839 42.3
Phvul.006G061700 Phaseolus vulgaris HOM05D004535 ORTHO05D005341 0.0e+00 1387.1 1855 41.5
Cc05_g15580 Coffea canephora HOM05D004535 ORTHO05D005341 0.0e+00 1386.7 1865 42.6
Migut.M01591 Erythranthe guttata HOM05D004535 ORTHO05D005341 0.0e+00 1386.3 1857 42.4
AUR62017172 Chenopodium quinoa HOM05D004535 ORTHO05D005341 0.0e+00 1385.9 1866 41.7
MSTRG.15824 Avicennia marina HOM05D004535 ORTHO05D005341 0.0e+00 1383.6 1867 42.8
CsaV3_3G003990 Cucumis sativus L. HOM05D004535 ORTHO05D005341 0.0e+00 1383.6 1852 42.2
MELO3C014086.2 Cucumis melo HOM05D004535 ORTHO05D005341 0.0e+00 1381.3 1852 42.3
Lj6g0015552 Lotus japonicus HOM05D004535 ORTHO05D005341 0.0e+00 1379.8 1861 41.5
BcaB04g18753 Brassica carinata HOM05D004535 ORTHO05D005341 0.0e+00 1379.0 1855 41.9
Thecc.07G003100 Theobroma cacao HOM05D004535 ORTHO05D005341 0.0e+00 1377.1 1804 42.8
vmacro09603 Vaccinium macrocarpon HOM05D004535 ORTHO05D005341 0.0e+00 1375.5 1958 40.8
QL08p000781 Quercus lobata HOM05D004535 ORTHO05D005341 0.0e+00 1374.8 1814 42.6
Lalb_Chr20g0115261 Lupinus albus HOM05D004535 ORTHO05D005341 0.0e+00 1374.0 1855 41.2
Aqoxy4G02281 Aquilegia oxysepala HOM05D004535 ORTHO05D005341 0.0e+00 1372.5 1855 42.1
Sed0018073 Sechium edule HOM05D004535 ORTHO05D005341 0.0e+00 1372.1 1853 42.0
EL10Ac4g07499 Beta vulgaris HOM05D004535 ORTHO05D005341 0.0e+00 1369.8 1850 41.4
BraA03t12967Z Brassica rapa HOM05D004535 ORTHO05D005341 0.0e+00 1368.2 1852 41.7
THA.LOC104822705 Tarenaya hassleriana HOM05D004535 ORTHO05D005341 0.0e+00 1367.4 1851 41.7
ClCG10G004180 Citrullus lanatus HOM05D004535 ORTHO05D005341 0.0e+00 1367.1 1864 41.9
A03p38140 Brassica napus HOM05D004535 ORTHO05D005341 0.0e+00 1365.5 1852 41.7
BcaC01g03999 Brassica carinata HOM05D004535 ORTHO05D005341 0.0e+00 1364.7 1857 41.6
BolC3t16899H Brassica oleracea HOM05D004535 ORTHO05D005341 0.0e+00 1364.7 1853 41.6
SMO184G0002 Selaginella moellendorffii HOM05D004535 ORTHO05D005341 0.0e+00 1362.1 1865 43.1
C03p46300 Brassica napus HOM05D004535 ORTHO05D005341 0.0e+00 1360.9 1859 41.6
AT3G13330 Arabidopsis thaliana HOM05D004535 ORTHO05D005341 0.0e+00 1359.0 1855 41.6
Aa31LG8G550 Aethionema arabicum HOM05D004535 ORTHO05D005341 0.0e+00 1358.6 1860 41.8
AL3G25150 Arabidopsis lyrata HOM05D004535 ORTHO05D005341 0.0e+00 1357.4 1851 41.5
Thhalv10019881m.g Eutrema salsugineum HOM05D004535 ORTHO05D005341 0.0e+00 1357.0 1853 41.3
CARHR087940 Cardamine hirsuta HOM05D004535 ORTHO05D005341 0.0e+00 1355.1 1853 41.5
Gohir.D05G387450 Gossypium hirsutum HOM05D004535 ORTHO05D005341 0.0e+00 1355.1 1846 41.7
Carub.0003s1271 Capsella rubella HOM05D004535 ORTHO05D005341 0.0e+00 1353.2 1853 41.4
VMungo0540G2510 Vigna mungo HOM05D004535 ORTHO05D005341 0.0e+00 1351.3 1802 41.8
Sp3g11530 Schrenkiella parvula HOM05D004535 ORTHO05D005341 0.0e+00 1348.2 1857 41.6
SalBow8G2487 Salvia bowleyana HOM05D004535 ORTHO05D005341 0.0e+00 1341.6 1868 41.6
FvH4_3g41830 Fragaria vesca HOM05D004535 ORTHO05D005341 0.0e+00 1340.5 1796 42.0
Haze_09903 Corylus avellana HOM05D004535 ORTHO05D005341 0.0e+00 1337.8 1897 40.7
Lsat_1_v5_gn_9_89621 Lactuca sativa HOM05D004535 ORTHO05D005341 0.0e+00 1337.0 1846 41.7
MBI15_g37116_MAGBIO Magnolia biondii HOM05D004535 ORTHO05D005341 0.0e+00 1334.7 1829 41.7
arahy.Tifrunner.gnm1.ann1.DDNH16 Arachis hypogaea HOM05D004535 ORTHO05D005341 0.0e+00 1332.8 1939 39.0
Sabra11G0138700 Salix brachista HOM05D004535 ORTHO05D005341 0.0e+00 1328.2 2014 39.2
SalBow8G3417 Salvia bowleyana HOM05D004535 ORTHO05D005341 0.0e+00 1322.8 1884 40.9
Duzib213G0320 Durio zibethinus HOM05D004535 ORTHO05D005341 0.0e+00 1321.2 1855 41.1
Nitab4.5_0001303g0050 Nicotiana tabacum HOM05D004535 ORTHO05D005341 0.0e+00 1320.8 1844 40.9
Oeu013013.2 Olea europaea HOM05D004535 ORTHO05D005341 0.0e+00 1318.1 1931 40.3
QL08p000755 Quercus lobata HOM05D004535 ORTHO05D005341 0.0e+00 1318.1 1808 41.4
Ah.06g180940 Amaranthus hybridus HOM05D004535 ORTHO05D005341 0.0e+00 1317.8 1876 40.5
Medtr3g461500 Medicago truncatula HOM05D004535 ORTHO05D005341 0.0e+00 1313.1 1882 39.6
Hund22978 Selenicereus undatus HOM05D004535 ORTHO05D005341 0.0e+00 1309.3 1856 40.9
Gohir.A04G001901 Gossypium hirsutum HOM05D004535 ORTHO05D005341 0.0e+00 1301.6 1711 43.0
HPP92_018915 Vanilla planifolia HOM05D004535 ORTHO05D005341 0.0e+00 1300.0 1864 40.4
SMO340G0109 Selaginella moellendorffii HOM05D004535 ORTHO05D005341 0.0e+00 1297.3 1831 41.8
DCAR_013765 Daucus carota HOM05D004535 ORTHO05D005341 0.0e+00 1288.5 1858 40.3
Zm00001eb281130 Zea mays HOM05D004535 ORTHO05D005341 0.0e+00 1279.2 1846 40.2
Haze_09904 Corylus avellana HOM05D004535 ORTHO05D005341 0.0e+00 1257.3 1946 39.2
Peaxi162Scf00232g00530 Petunia axillaris HOM05D004535 ORTHO05D005341 0.0e+00 1253.4 1869 39.3
Nn1g08312 Nelumbo nucifera HOM05D004535 ORTHO05D005341 0.0e+00 1251.5 1660 43.6
CiPaw.12G142100 Carya illinoinensis HOM05D004535 ORTHO05D005341 0.0e+00 1203.0 1717 40.9
Actinidia03667 Actinidia chinensis HOM05D004535 ORTHO05D005341 0.0e+00 1192.2 1602 43.3
Nitab4.5_0000152g0130 Nicotiana tabacum HOM05D004535 ORTHO05D005341 0.0e+00 1186.4 1689 41.3
SMO239G0001 Selaginella moellendorffii HOM05D004535 ORTHO05D005341 0.0e+00 1168.3 1844 38.5
CBR_g24134 Chara braunii HOM05D004535 ORTHO05D005341 0.0e+00 1140.2 1983 37.3
Ca_14867_v3 Cicer arietinum L. HOM05D004535 ORTHO05D005341 0.0e+00 1139.8 1540 41.0
arahy.Tifrunner.gnm1.ann1.HJC4WF Arachis hypogaea HOM05D004535 ORTHO05D005341 0.0e+00 1112.8 1460 41.0
CDE05G3236 Ceratophyllum demersum HOM05D004535 ORTHO05D005341 1.9e-310 1070.1 1478 41.5
Cpa.g.sc12.80 Carica papaya HOM05D004535 ORTHO05D005341 1.0e-295 1021.1 1762 36.3
Potri.011G167700 Populus trichocarpa HOM05D004535 ORTHO05D005341 1.3e-271 941.0 1159 43.1
unitig_699.g19598 Utricularia gibba HOM05D004535 ORTHO05D005341 8.7e-263 911.8 1849 33.8
MD00G1206400 Malus domestica HOM05D004535 ORTHO05D005341 3.0e-255 886.7 1280 40.5
PGSC0003DMG401022150 Solanum tuberosum HOM05D004535 ORTHO05D005341 1.8e-220 771.2 957 42.9
CAN.G623.63 Capsicum annuum HOM05D004535 ORTHO05D005341 6.8e-175 619.8 888 41.9
Ca_14861_v3 Cicer arietinum L. HOM05D004535 ORTHO05D005341 6.2e-168 596.7 723 43.3
CAN.G623.64 Capsicum annuum HOM05D004535 ORTHO05D005341 7.9e-155 553.1 695 44.5
Os06g0301300 Oryza sativa ssp. japonica HOM05D004535 ORTHO05D005341 1.2e-150 539.3 700 40.7
MCO11G531 Micromonas commoda HOM05D004535 ORTHO05D005341 5.1e-138 497.3 1889 25.9
PRCOL_00006556 Prasinoderma coloniale HOM05D004535 ORTHO05D005341 1.4e-119 436.0 1938 26.2
COL.COLO4_07778 Corchorus olitorius HOM05D004535 ORTHO05D005341 1.5e-113 416.0 1143 28.8
Potri.011G167650 Populus trichocarpa HOM05D004535 ORTHO05D005341 2.2e-104 385.6 525 43.6
SEGI_13123 Sequoiadendron giganteum HOM05D004535 ORTHO05D005341 5.0e-101 374.4 450 45.1
SEGI_38328 Sequoiadendron giganteum HOM05D004535 ORTHO05D005341 1.9e-100 372.5 473 44.2
Actinidia00829 Actinidia chinensis HOM05D004535 ORTHO05D005341 1.4e-71 276.6 618 33.3
SEGI_32129 Sequoiadendron giganteum HOM05D004535 ORTHO05D005341 1.6e-67 263.1 344 45.9
QL10p044954 Quercus lobata HOM05D004535 ORTHO05D005341 1.1e-66 260.4 648 31.6
Ca_14860_v3 Cicer arietinum L. HOM05D004535 ORTHO05D005341 4.3e-60 238.4 357 41.2
VMungo0540G1109 Vigna mungo HOM05D004535 ORTHO05D005341 6.9e-58 231.1 352 36.9
MD00G1206600 Malus domestica HOM05D004535 ORTHO05D005341 1.1e-52 213.8 223 43.5
MD00G1206500 Malus domestica HOM05D004535 ORTHO05D005341 6.4e-48 198.0 249 44.6
Actinidia00827 Actinidia chinensis HOM05D004535 ORTHO05D005341 1.6e-46 193.4 221 41.2
VMungo1127G2045 Vigna mungo HOM05D004535 ORTHO05D005341 4.0e-42 178.7 258 38.0
Nn1g08306 Nelumbo nucifera HOM05D004535 ORTHO05D005341 1.5e-36 160.2 166 44.0
Cre14.g628702 Chlamydomonas reinhardtii HOM05D004535 ORTHO05D005341 7.4e-36 157.9 662 24.6
arahy.Tifrunner.gnm1.ann1.P6R29M Arachis hypogaea HOM05D004535 ORTHO05D005341 2.4e-34 152.9 332 34.3
Actinidia03668 Actinidia chinensis HOM05D004535 ORTHO05D005341 5.8e-33 148.3 228 36.0
Cfa027001 Carpinus fangiana HOM05D004535 ORTHO05D005341 2.9e-32 146.0 2011 19.6
SEGI_15666 Sequoiadendron giganteum HOM05D004535 ORTHO05D005341 4.9e-32 145.2 144 55.6
Cpa.g.sc12.82 Carica papaya HOM05D004535 ORTHO05D005341 1.0e-24 120.9 93 60.2
Actinidia00828 Actinidia chinensis HOM05D004535 ORTHO05D005341 1.0e-13 84.3 210 28.6
SEGI_18126 Sequoiadendron giganteum HOM05D004535 ORTHO05D005341 1.2e-09 70.9 62 46.8
Lsat_1_v5_gn_0_5420 Lactuca sativa HOM05D004535 ORTHO05D005341 3.8e-08 65.9 72 43.1
Psat5g106440 Pisum sativum HOM05D004535 ORTHO05D005341 1.1e-07 64.3 55 52.7
arahy.Tifrunner.gnm1.ann1.QBA8JR Arachis hypogaea HOM05D004535 ORTHO05D005341 1.4e-07 63.9 71 42.3
PSO541G1144 Papaver somniferum HOM05D004535 ORTHO05D005341 4.7e-06 58.9 98 35.7


User provided reference genes

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