Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c20_11410 Physcomitrium patens HOM05D004202 ORTHO05D005021 1.1e-190 669.8 336 100.0
Pp3c8_10870 Physcomitrium patens HOM05D004202 ORTHO05D005021 1.1e-59 234.6 177 64.4
Mapoly0019s0013 Marchantia polymorpha HOM05D004202 ORTHO05D005021 1.5e-56 224.2 194 57.2
Hma1.2p1_0042F.1_g025610 Hydrangea macrophylla HOM05D004202 ORTHO05D005021 8.4e-55 218.4 231 50.2
Nn8g39505 Nelumbo nucifera HOM05D004202 ORTHO05D005021 4.6e-53 212.6 208 52.4
Rhsim08G0212900 Rhododendron simsii HOM05D004202 ORTHO05D005021 3.0e-52 209.9 228 49.1
Lj5A72T20 Lonicera japonica HOM05D004202 ORTHO05D005021 5.1e-52 209.1 221 48.9
Hma1.2p1_1144F.1_g261300 Hydrangea macrophylla HOM05D004202 ORTHO05D005021 8.7e-52 208.4 211 51.7
DCAR_025511 Daucus carota HOM05D004202 ORTHO05D005021 3.3e-51 206.5 212 50.5
BcaB04g20901 Brassica carinata HOM05D004202 ORTHO05D005021 4.3e-51 206.1 217 50.2
unitig_699.g19094 Utricularia gibba HOM05D004202 ORTHO05D005021 4.3e-51 206.1 233 47.6
Actinidia01745 Actinidia chinensis HOM05D004202 ORTHO05D005021 9.6e-51 204.9 224 48.2
CSS0029540 Camellia sinensis var. sinensis HOM05D004202 ORTHO05D005021 1.3e-50 204.5 212 49.1
CSS0043041 Camellia sinensis var. sinensis HOM05D004202 ORTHO05D005021 1.3e-50 204.5 212 49.1
Dinv30605 Davidia involucrata HOM05D004202 ORTHO05D005021 1.6e-50 204.1 220 47.7
Lj9A500T78 Lonicera japonica HOM05D004202 ORTHO05D005021 1.6e-50 204.1 237 45.6
AT3G15820 Arabidopsis thaliana HOM05D004202 ORTHO05D005021 2.1e-50 203.8 215 49.3
BolC1t04818H Brassica oleracea HOM05D004202 ORTHO05D005021 2.1e-50 203.8 217 50.2
LjContig00542g0021230 Lotus japonicus HOM05D004202 ORTHO05D005021 2.1e-50 203.8 235 48.5
Oeu013862.1 Olea europaea HOM05D004202 ORTHO05D005021 2.8e-50 203.4 211 47.9
Oeu042085.1 Olea europaea HOM05D004202 ORTHO05D005021 2.8e-50 203.4 211 47.9
Manes.11G056900 Manihot esculenta HOM05D004202 ORTHO05D005021 4.8e-50 202.6 241 46.5
BcaC09g48559 Brassica carinata HOM05D004202 ORTHO05D005021 6.2e-50 202.2 217 49.8
A01p38300 Brassica napus HOM05D004202 ORTHO05D005021 6.2e-50 202.2 217 49.8
C01p48640 Brassica napus HOM05D004202 ORTHO05D005021 6.2e-50 202.2 217 49.8
CARHR090910 Cardamine hirsuta HOM05D004202 ORTHO05D005021 6.2e-50 202.2 212 49.1
TAR383G0028 Trochodendron aralioides HOM05D004202 ORTHO05D005021 8.1e-50 201.8 214 49.1
Haze_16560 Corylus avellana HOM05D004202 ORTHO05D005021 1.1e-49 201.4 234 46.2
Sp3g14140 Schrenkiella parvula HOM05D004202 ORTHO05D005021 1.1e-49 201.4 233 45.1
Aa31LG8G3020 Aethionema arabicum HOM05D004202 ORTHO05D005021 1.4e-49 201.1 224 47.3
A03p39480 Brassica napus HOM05D004202 ORTHO05D005021 1.4e-49 201.1 215 48.4
BraA03t13098Z Brassica rapa HOM05D004202 ORTHO05D005021 1.4e-49 201.1 215 48.4
Cfa001960 Carpinus fangiana HOM05D004202 ORTHO05D005021 1.4e-49 201.1 216 48.6
MD17G1212200 Malus domestica HOM05D004202 ORTHO05D005021 1.4e-49 201.1 215 49.8
VMungo0331G0004 Vigna mungo HOM05D004202 ORTHO05D005021 1.4e-49 201.1 251 45.8
BcaC01g03855 Brassica carinata HOM05D004202 ORTHO05D005021 1.8e-49 200.7 211 48.8
C03p47880 Brassica napus HOM05D004202 ORTHO05D005021 1.8e-49 200.7 211 48.8
CiPaw.01G248300 Carya illinoinensis HOM05D004202 ORTHO05D005021 1.8e-49 200.7 226 49.6
AL3G28480 Arabidopsis lyrata HOM05D004202 ORTHO05D005021 2.4e-49 200.3 215 47.9
BolC3t17065H Brassica oleracea HOM05D004202 ORTHO05D005021 2.4e-49 200.3 211 48.8
BraA01t03881Z Brassica rapa HOM05D004202 ORTHO05D005021 2.4e-49 200.3 217 49.8
arahy.Tifrunner.gnm1.ann1.KAJ2Z5 Arachis hypogaea HOM05D004202 ORTHO05D005021 3.1e-49 199.9 260 45.0
Aqoxy7G02289 Aquilegia oxysepala HOM05D004202 ORTHO05D005021 4.0e-49 199.5 248 43.5
CsaV3_4G001700 Cucumis sativus L. HOM05D004202 ORTHO05D005021 4.0e-49 199.5 208 50.0
A05p33580 Brassica napus HOM05D004202 ORTHO05D005021 5.3e-49 199.1 211 47.9
BraA05t22181Z Brassica rapa HOM05D004202 ORTHO05D005021 5.3e-49 199.1 211 47.9
BcaB06g25690 Brassica carinata HOM05D004202 ORTHO05D005021 6.9e-49 198.7 215 47.0
Eucgr.F03877 Eucalyptus grandis HOM05D004202 ORTHO05D005021 6.9e-49 198.7 216 49.1
Thhalv10021241m.g Eutrema salsugineum HOM05D004202 ORTHO05D005021 6.9e-49 198.7 215 48.4
Manes.04G112600 Manihot esculenta HOM05D004202 ORTHO05D005021 6.9e-49 198.7 212 50.0
Phvul.010G156400 Phaseolus vulgaris HOM05D004202 ORTHO05D005021 6.9e-49 198.7 261 43.3
Carub.0003s1556 Capsella rubella HOM05D004202 ORTHO05D005021 9.0e-49 198.4 213 47.4
MELO3C017864.2 Cucumis melo HOM05D004202 ORTHO05D005021 9.0e-49 198.4 208 49.5
BcaC05g28930 Brassica carinata HOM05D004202 ORTHO05D005021 1.2e-48 198.0 211 47.4
C05p50570 Brassica napus HOM05D004202 ORTHO05D005021 1.2e-48 198.0 211 47.4
MBI04_g19388_MAGBIO Magnolia biondii HOM05D004202 ORTHO05D005021 1.2e-48 198.0 209 49.3
Psat7g257200 Pisum sativum HOM05D004202 ORTHO05D005021 1.2e-48 198.0 268 43.3
TPR.G38651 Trifolium pratense HOM05D004202 ORTHO05D005021 1.2e-48 198.0 234 45.3
BolC5t33802H Brassica oleracea HOM05D004202 ORTHO05D005021 2.0e-48 197.2 211 47.4
SGA_v2.0_scaffold37G14766 Striga asiatica HOM05D004202 ORTHO05D005021 2.0e-48 197.2 226 46.9
HPP92_023144 Vanilla planifolia HOM05D004202 ORTHO05D005021 2.0e-48 197.2 222 48.6
Medtr4g010120 Medicago truncatula HOM05D004202 ORTHO05D005021 2.6e-48 196.8 254 43.7
Solyc06g068150.3 Solanum lycopersicum HOM05D004202 ORTHO05D005021 2.6e-48 196.8 252 43.7
Glyma.08G213100 Glycine max HOM05D004202 ORTHO05D005021 3.4e-48 196.4 229 46.3
Sc10g0005940 Simmondsia chinensis HOM05D004202 ORTHO05D005021 3.4e-48 196.4 212 49.1
Atru.chr1.2949 Acer truncatum HOM05D004202 ORTHO05D005021 4.5e-48 196.1 226 45.1
Ah.01g020590 Amaranthus hybridus HOM05D004202 ORTHO05D005021 4.5e-48 196.1 209 49.3
arahy.Tifrunner.gnm1.ann1.42NKCZ Arachis hypogaea HOM05D004202 ORTHO05D005021 4.5e-48 196.1 260 44.2
arahy.Tifrunner.gnm1.ann1.J5QNAH Arachis hypogaea HOM05D004202 ORTHO05D005021 4.5e-48 196.1 210 49.0
Duzib235G0370 Durio zibethinus HOM05D004202 ORTHO05D005021 4.5e-48 196.1 224 47.8
Sopen06g025420 Solanum pennellii HOM05D004202 ORTHO05D005021 4.5e-48 196.1 221 47.1
Thecc.06G024900 Theobroma cacao HOM05D004202 ORTHO05D005021 4.5e-48 196.1 225 48.0
AUR62011519 Chenopodium quinoa HOM05D004202 ORTHO05D005021 5.8e-48 195.7 223 48.0
COL.COLO4_11948 Corchorus olitorius HOM05D004202 ORTHO05D005021 5.8e-48 195.7 218 47.7
THA.LOC104810509 Tarenaya hassleriana HOM05D004202 ORTHO05D005021 5.8e-48 195.7 232 45.3
PGR102G1411 Punica granatum HOM05D004202 ORTHO05D005021 7.6e-48 195.3 219 48.4
QL05p029813 Quercus lobata HOM05D004202 ORTHO05D005021 1.0e-47 194.9 214 47.7
Hund06558 Selenicereus undatus HOM05D004202 ORTHO05D005021 1.0e-47 194.9 212 49.1
Potri.001G204100 Populus trichocarpa HOM05D004202 ORTHO05D005021 1.3e-47 194.5 217 49.3
SalBow2G2770 Salvia bowleyana HOM05D004202 ORTHO05D005021 1.3e-47 194.5 237 44.7
Prupe.3G087500 Prunus persica HOM05D004202 ORTHO05D005021 1.7e-47 194.1 215 47.9
MSTRG.11142 Avicennia marina HOM05D004202 ORTHO05D005021 2.2e-47 193.7 212 47.2
Nitab4.5_0008575g0020 Nicotiana tabacum HOM05D004202 ORTHO05D005021 2.2e-47 193.7 283 40.3
EL10Ac9g21900 Beta vulgaris HOM05D004202 ORTHO05D005021 3.8e-47 193.0 229 46.7
CAN.G1503.7 Capsicum annuum HOM05D004202 ORTHO05D005021 6.5e-47 192.2 204 48.5
PGSC0003DMG400028510 Solanum tuberosum HOM05D004202 ORTHO05D005021 6.5e-47 192.2 221 46.6
Lsat_1_v5_gn_4_90081 Lactuca sativa HOM05D004202 ORTHO05D005021 8.4e-47 191.8 213 46.0
Lalb_Chr01g0012351 Lupinus albus HOM05D004202 ORTHO05D005021 8.4e-47 191.8 264 42.8
Ca_20447_v3 Cicer arietinum L. HOM05D004202 ORTHO05D005021 1.1e-46 191.4 222 45.9
RcHm_v2.0_Chr2g0135261 Rosa chinensis HOM05D004202 ORTHO05D005021 1.4e-46 191.0 255 43.9
BcaC03g14245 Brassica carinata HOM05D004202 ORTHO05D005021 1.9e-46 190.7 212 45.8
A02p09730 Brassica napus HOM05D004202 ORTHO05D005021 1.9e-46 190.7 212 45.8
C02p16260 Brassica napus HOM05D004202 ORTHO05D005021 1.9e-46 190.7 212 45.8
BolC2t07727H Brassica oleracea HOM05D004202 ORTHO05D005021 1.9e-46 190.7 212 45.8
BraA02t06038Z Brassica rapa HOM05D004202 ORTHO05D005021 1.9e-46 190.7 212 45.8
FAN09G0069 Fragaria x ananassa HOM05D004202 ORTHO05D005021 1.9e-46 190.7 253 43.1
ClCG07G012460 Citrullus lanatus HOM05D004202 ORTHO05D005021 2.5e-46 190.3 210 47.6
FAN05G3204 Fragaria x ananassa HOM05D004202 ORTHO05D005021 3.2e-46 189.9 253 43.1
Potri.003G032200 Populus trichocarpa HOM05D004202 ORTHO05D005021 3.2e-46 189.9 210 48.6
CANSAT56G4089 Cannabis sativa HOM05D004202 ORTHO05D005021 5.5e-46 189.1 215 47.0
AUR62016337 Chenopodium quinoa HOM05D004202 ORTHO05D005021 5.5e-46 189.1 210 48.1
Gohir.A06G185500 Gossypium hirsutum HOM05D004202 ORTHO05D005021 5.5e-46 189.1 216 47.7
Peaxi162Scf00332g00619 Petunia axillaris HOM05D004202 ORTHO05D005021 7.1e-46 188.7 231 44.6
Aqoxy4G02272 Aquilegia oxysepala HOM05D004202 ORTHO05D005021 9.3e-46 188.3 212 47.2
HanXRQChr16g0500411 Helianthus annuus HOM05D004202 ORTHO05D005021 9.3e-46 188.3 207 49.8
Peaxi162Scf00207g00630 Petunia axillaris HOM05D004202 ORTHO05D005021 9.3e-46 188.3 226 43.4
CARHR090920 Cardamine hirsuta HOM05D004202 ORTHO05D005021 1.2e-45 188.0 245 43.3
Glyma.07G029800 Glycine max HOM05D004202 ORTHO05D005021 1.2e-45 188.0 225 44.4
TWI18G0582 Tripterygium wilfordii HOM05D004202 ORTHO05D005021 1.2e-45 188.0 231 45.5
Gorai.010G225300 Gossypium raimondii HOM05D004202 ORTHO05D005021 1.6e-45 187.6 216 47.2
BcaB05g22200 Brassica carinata HOM05D004202 ORTHO05D005021 2.1e-45 187.2 212 45.8
Cpa.g.sc10.268 Carica papaya HOM05D004202 ORTHO05D005021 2.1e-45 187.2 225 46.2
CDE07G1814 Ceratophyllum demersum HOM05D004202 ORTHO05D005021 2.1e-45 187.2 230 43.5
FvH4_6g29670 Fragaria vesca HOM05D004202 ORTHO05D005021 2.1e-45 187.2 253 42.7
Thhalv10015624m.g Eutrema salsugineum HOM05D004202 ORTHO05D005021 2.7e-45 186.8 213 45.5
Nitab4.5_0003463g0060 Nicotiana tabacum HOM05D004202 ORTHO05D005021 3.5e-45 186.4 287 40.4
PGSC0003DMG400000640 Solanum tuberosum HOM05D004202 ORTHO05D005021 4.6e-45 186.0 208 46.6
Prupe.3G087400 Prunus persica HOM05D004202 ORTHO05D005021 6.0e-45 185.7 213 46.5
Solyc03g116740.3 Solanum lycopersicum HOM05D004202 ORTHO05D005021 6.0e-45 185.7 208 46.6
Sopen03g035650 Solanum pennellii HOM05D004202 ORTHO05D005021 6.0e-45 185.7 208 46.6
Duzib192G0312 Durio zibethinus HOM05D004202 ORTHO05D005021 7.9e-45 185.3 218 46.8
Gohir.D06G192100 Gossypium hirsutum HOM05D004202 ORTHO05D005021 7.9e-45 185.3 216 46.8
Sed0008120 Sechium edule HOM05D004202 ORTHO05D005021 7.9e-45 185.3 206 47.1
HanXRQChr02g0058561 Helianthus annuus HOM05D004202 ORTHO05D005021 1.0e-44 184.9 210 44.8
Ciclev10026224m.g Citrus clementina HOM05D004202 ORTHO05D005021 1.3e-44 184.5 211 46.9
Sc10g0008080 Simmondsia chinensis HOM05D004202 ORTHO05D005021 1.3e-44 184.5 211 46.4
CAN.G407.80 Capsicum annuum HOM05D004202 ORTHO05D005021 2.3e-44 183.7 208 45.7
AT3G15830 Arabidopsis thaliana HOM05D004202 ORTHO05D005021 3.0e-44 183.3 227 43.6
Gohir.A05G123350 Gossypium hirsutum HOM05D004202 ORTHO05D005021 3.0e-44 183.3 213 45.1
GSVIVG01017341001 Vitis vinifera HOM05D004202 ORTHO05D005021 3.0e-44 183.3 182 52.2
AL3G28490 Arabidopsis lyrata HOM05D004202 ORTHO05D005021 3.9e-44 183.0 256 41.4
ECA232G2164 Erigeron canadensis HOM05D004202 ORTHO05D005021 3.9e-44 183.0 207 46.4
Carub.0003s1557 Capsella rubella HOM05D004202 ORTHO05D005021 5.1e-44 182.6 212 43.9
Migut.I00763 Erythranthe guttata HOM05D004202 ORTHO05D005021 5.1e-44 182.6 213 43.7
Gorai.009G128300 Gossypium raimondii HOM05D004202 ORTHO05D005021 8.7e-44 181.8 214 43.9
Gohir.D05G124300 Gossypium hirsutum HOM05D004202 ORTHO05D005021 1.9e-43 180.6 214 43.9
Sabra03G0018400 Salix brachista HOM05D004202 ORTHO05D005021 3.3e-43 179.9 211 44.5
PSO170G3116 Papaver somniferum HOM05D004202 ORTHO05D005021 7.4e-43 178.7 208 45.2
Cc04_g04400 Coffea canephora HOM05D004202 ORTHO05D005021 9.6e-43 178.3 172 52.9
FAN14G0864 Fragaria x ananassa HOM05D004202 ORTHO05D005021 2.1e-42 177.2 277 39.4
PSO017G2363 Papaver somniferum HOM05D004202 ORTHO05D005021 2.8e-42 176.8 193 47.7
Lj3g0004144 Lotus japonicus HOM05D004202 ORTHO05D005021 1.2e-40 171.4 235 43.8
Os06g0607100 Oryza sativa ssp. japonica HOM05D004202 ORTHO05D005021 1.4e-38 164.5 216 44.0
MBI04_g42944_MAGBIO Magnolia biondii HOM05D004202 ORTHO05D005021 1.9e-38 164.1 175 48.0
Lj3g0021663 Lotus japonicus HOM05D004202 ORTHO05D005021 2.3e-36 157.1 238 42.0
Lalb_Chr25g0279291 Lupinus albus HOM05D004202 ORTHO05D005021 9.7e-35 151.8 115 63.5
Sp6g17250 Schrenkiella parvula HOM05D004202 ORTHO05D005021 1.3e-34 151.4 224 39.7
Thecc.06G024300 Theobroma cacao HOM05D004202 ORTHO05D005021 1.6e-34 151.0 142 54.9
Thecc.06G024700 Theobroma cacao HOM05D004202 ORTHO05D005021 4.8e-34 149.4 142 54.2
Lsat_1_v5_gn_1_34380 Lactuca sativa HOM05D004202 ORTHO05D005021 9.0e-33 145.2 214 38.8
Oeu013866.1 Olea europaea HOM05D004202 ORTHO05D005021 7.9e-29 132.1 211 37.0
Sabra01G0157700 Salix brachista HOM05D004202 ORTHO05D005021 1.7e-26 124.4 263 36.1
BcaB01g04346 Brassica carinata HOM05D004202 ORTHO05D005021 1.1e-22 111.7 227 31.7
Oeu013867.1 Olea europaea HOM05D004202 ORTHO05D005021 6.1e-21 105.9 208 30.8
FAN02G2528 Fragaria x ananassa HOM05D004202 ORTHO05D005021 3.9e-20 103.2 285 30.9
AagrBONN_evm.TU.Sc2ySwM_228.136 Anthoceros agrestis HOM05D004202 ORTHO05D005021 1.2e-16 91.7 89 48.3
Oeu042081.1 Olea europaea HOM05D004202 ORTHO05D005021 2.6e-16 90.5 176 35.8
Nitab4.5_0000373g0050 Nicotiana tabacum HOM05D004202 ORTHO05D005021 1.3e-15 88.2 82 54.9


User provided reference genes

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