Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c20_10810 Physcomitrium patens HOM05D006927 ORTHO05D009065 4.4e-236 820.8 400 100.0
AagrBONN_evm.TU.Sc2ySwM_228.4179 Anthoceros agrestis HOM05D006927 ORTHO05D009065 1.5e-114 417.2 336 59.8
Mapoly0110s0034 Marchantia polymorpha HOM05D006927 ORTHO05D009065 6.4e-110 401.7 324 60.5
FAN03G0521 Fragaria x ananassa HOM05D006927 ORTHO05D009065 3.9e-99 365.9 299 56.5
Cc02_g26470 Coffea canephora HOM05D006927 ORTHO05D009065 1.9e-98 363.6 318 55.0
FvH4_7g08340 Fragaria vesca HOM05D006927 ORTHO05D009065 1.9e-98 363.6 299 55.9
RcHm_v2.0_Chr1g0340711 Rosa chinensis HOM05D006927 ORTHO05D009065 2.5e-98 363.2 301 55.8
Gohir.A11G224222 Gossypium hirsutum HOM05D006927 ORTHO05D009065 1.2e-97 360.9 299 55.5
Gorai.007G250200 Gossypium raimondii HOM05D006927 ORTHO05D009065 1.2e-97 360.9 299 55.9
GSVIVG01019324001 Vitis vinifera HOM05D006927 ORTHO05D009065 1.2e-97 360.9 309 55.7
Zm00001eb208940 Zea mays HOM05D006927 ORTHO05D009065 2.1e-97 360.1 312 56.1
Peaxi162Scf00907g00025 Petunia axillaris HOM05D006927 ORTHO05D009065 3.6e-97 359.4 309 55.3
AT5G17670 Arabidopsis thaliana HOM05D006927 ORTHO05D009065 6.2e-97 358.6 325 54.5
FAN10G1940 Fragaria x ananassa HOM05D006927 ORTHO05D009065 8.1e-97 358.2 307 55.0
AL6G28760 Arabidopsis lyrata HOM05D006927 ORTHO05D009065 1.4e-96 357.5 319 54.2
VMungo0251G3349 Vigna mungo HOM05D006927 ORTHO05D009065 1.4e-96 357.5 299 57.2
Prupe.2G106800 Prunus persica HOM05D006927 ORTHO05D009065 2.4e-96 356.7 328 50.9
TWI34G1327 Tripterygium wilfordii HOM05D006927 ORTHO05D009065 2.4e-96 356.7 294 56.5
Aqoxy1G00986 Aquilegia oxysepala HOM05D006927 ORTHO05D009065 4.0e-96 355.9 305 58.0
Solyc01g081480.3 Solanum lycopersicum HOM05D006927 ORTHO05D009065 5.2e-96 355.5 298 55.7
Thecc.05G234500 Theobroma cacao HOM05D006927 ORTHO05D009065 1.5e-95 354.0 299 56.5
Thhalv10014137m.g Eutrema salsugineum HOM05D006927 ORTHO05D009065 2.0e-95 353.6 322 53.7
Manes.09G133500 Manihot esculenta HOM05D006927 ORTHO05D009065 2.0e-95 353.6 300 56.3
Sp6g26550 Schrenkiella parvula HOM05D006927 ORTHO05D009065 5.8e-95 352.1 325 53.5
PGSC0003DMG400031110 Solanum tuberosum HOM05D006927 ORTHO05D009065 5.8e-95 352.1 298 55.0
CsaV3_6G006390 Cucumis sativus L. HOM05D006927 ORTHO05D009065 7.6e-95 351.7 299 56.9
Lsat_1_v5_gn_1_89341 Lactuca sativa HOM05D006927 ORTHO05D009065 9.9e-95 351.3 327 52.9
FAN06G3009 Fragaria x ananassa HOM05D006927 ORTHO05D009065 1.3e-94 350.9 317 52.4
HanXRQChr01g0018481 Helianthus annuus HOM05D006927 ORTHO05D009065 1.3e-94 350.9 303 56.8
SalBow5G1207 Salvia bowleyana HOM05D006927 ORTHO05D009065 1.7e-94 350.5 318 54.1
Sopen01g033040 Solanum pennellii HOM05D006927 ORTHO05D009065 1.7e-94 350.5 298 55.0
Nitab4.5_0000792g0130 Nicotiana tabacum HOM05D006927 ORTHO05D009065 2.2e-94 350.1 316 52.8
Rhsim07G0047700 Rhododendron simsii HOM05D006927 ORTHO05D009065 2.2e-94 350.1 318 52.5
Medtr3g118320 Medicago truncatula HOM05D006927 ORTHO05D009065 3.8e-94 349.4 332 52.1
CAN.G992.25 Capsicum annuum HOM05D006927 ORTHO05D009065 1.4e-93 347.4 298 55.7
QL04p053394 Quercus lobata HOM05D006927 ORTHO05D009065 1.4e-93 347.4 321 52.3
Carub.0006s1591 Capsella rubella HOM05D006927 ORTHO05D009065 2.4e-93 346.7 328 51.5
Potri.013G070700 Populus trichocarpa HOM05D006927 ORTHO05D009065 4.2e-93 345.9 301 55.1
BcaC03g13532 Brassica carinata HOM05D006927 ORTHO05D009065 7.1e-93 345.1 325 52.0
Eucgr.D01080 Eucalyptus grandis HOM05D006927 ORTHO05D009065 7.1e-93 345.1 294 55.4
Os02g0129900 Oryza sativa ssp. japonica HOM05D006927 ORTHO05D009065 7.1e-93 345.1 306 55.2
CSS0031880 Camellia sinensis var. sinensis HOM05D006927 ORTHO05D009065 9.3e-93 344.7 301 54.2
DCAR_001906 Daucus carota HOM05D006927 ORTHO05D009065 9.3e-93 344.7 303 55.8
Duzib177G0162 Durio zibethinus HOM05D006927 ORTHO05D009065 9.3e-93 344.7 305 54.1
Migut.B01420 Erythranthe guttata HOM05D006927 ORTHO05D009065 9.3e-93 344.7 299 53.8
Nitab4.5_0006785g0060 Nicotiana tabacum HOM05D006927 ORTHO05D009065 9.3e-93 344.7 335 49.6
Phvul.002G317100 Phaseolus vulgaris HOM05D006927 ORTHO05D009065 1.6e-92 344.0 299 54.8
Ciclev10032190m.g Citrus clementina HOM05D006927 ORTHO05D009065 2.1e-92 343.6 305 54.4
Lj1g0006598 Lotus japonicus HOM05D006927 ORTHO05D009065 2.7e-92 343.2 304 55.3
A02p04400 Brassica napus HOM05D006927 ORTHO05D009065 3.5e-92 342.8 326 52.5
MELO3C022480.2 Cucumis melo HOM05D006927 ORTHO05D009065 3.5e-92 342.8 302 55.0
Ah.16g104050 Amaranthus hybridus HOM05D006927 ORTHO05D009065 4.6e-92 342.4 311 54.7
CSS0044270 Camellia sinensis var. sinensis HOM05D006927 ORTHO05D009065 4.6e-92 342.4 298 53.7
Cpa.g.sc73.27 Carica papaya HOM05D006927 ORTHO05D009065 6.0e-92 342.0 305 52.1
Glyma.06G001500 Glycine max HOM05D006927 ORTHO05D009065 6.0e-92 342.0 323 53.9
PGR083G0610 Punica granatum HOM05D006927 ORTHO05D009065 6.0e-92 342.0 295 57.3
Sed0018978 Sechium edule HOM05D006927 ORTHO05D009065 6.0e-92 342.0 299 55.9
ECA248G1152 Erigeron canadensis HOM05D006927 ORTHO05D009065 1.0e-91 341.3 310 52.6
ATR0568G108 Amborella trichopoda HOM05D006927 ORTHO05D009065 1.3e-91 340.9 298 55.0
PSO675G5316 Papaver somniferum HOM05D006927 ORTHO05D009065 1.3e-91 340.9 320 50.3
Dinv43961 Davidia involucrata HOM05D006927 ORTHO05D009065 1.7e-91 340.5 321 50.5
arahy.Tifrunner.gnm1.ann1.A7PVHI Arachis hypogaea HOM05D006927 ORTHO05D009065 2.3e-91 340.1 301 54.8
arahy.Tifrunner.gnm1.ann1.DTN3WJ Arachis hypogaea HOM05D006927 ORTHO05D009065 3.0e-91 339.7 322 52.2
C02p09230 Brassica napus HOM05D006927 ORTHO05D009065 3.3e-90 336.3 329 50.8
THA.LOC104820815 Tarenaya hassleriana HOM05D006927 ORTHO05D009065 7.3e-90 335.1 304 53.3
MD07G1081500 Malus domestica HOM05D006927 ORTHO05D009065 6.2e-89 332.0 294 53.1
Atru.chr2.1634 Acer truncatum HOM05D006927 ORTHO05D009065 1.4e-88 330.9 326 50.0
SMO141G0137 Selaginella moellendorffii HOM05D006927 ORTHO05D009065 3.1e-88 329.7 296 55.7
TPR.G38566 Trifolium pratense HOM05D006927 ORTHO05D009065 5.3e-88 328.9 305 53.4
Sc11g0005590 Simmondsia chinensis HOM05D006927 ORTHO05D009065 6.9e-88 328.6 297 53.2
CANSAT25G2771 Cannabis sativa HOM05D006927 ORTHO05D009065 5.8e-87 325.5 302 51.7
Aa31LG11G11960 Aethionema arabicum HOM05D006927 ORTHO05D009065 7.6e-87 325.1 360 47.5
TAR629G3441 Trochodendron aralioides HOM05D006927 ORTHO05D009065 1.7e-86 323.9 292 53.1
ClCG06G000620 Citrullus lanatus HOM05D006927 ORTHO05D009065 8.4e-86 321.6 327 50.2
Haze_15787 Corylus avellana HOM05D006927 ORTHO05D009065 8.4e-86 321.6 318 50.9
Lj9A617T58 Lonicera japonica HOM05D006927 ORTHO05D009065 1.4e-85 320.9 290 53.8
MBI04_g06278_MAGBIO Magnolia biondii HOM05D006927 ORTHO05D009065 4.2e-85 319.3 290 53.1
COL.COLO4_21417 Corchorus olitorius HOM05D006927 ORTHO05D009065 1.6e-84 317.4 289 53.6
Ca_15418_v3 Cicer arietinum L. HOM05D006927 ORTHO05D009065 2.3e-83 313.5 289 54.0
SGA_v2.0_scaffold98G29375 Striga asiatica HOM05D006927 ORTHO05D009065 6.6e-83 312.0 286 53.8
Lalb_Chr08g0246751 Lupinus albus HOM05D006927 ORTHO05D009065 1.5e-82 310.8 301 50.5
vmacro13598 Vaccinium macrocarpon HOM05D006927 ORTHO05D009065 3.4e-79 299.7 431 39.0
FAN01G0804 Fragaria x ananassa HOM05D006927 ORTHO05D009065 1.3e-78 297.7 293 50.2
CDE02G0279 Ceratophyllum demersum HOM05D006927 ORTHO05D009065 8.4e-78 295.0 296 49.3
MCO09G674 Micromonas commoda HOM05D006927 ORTHO05D009065 1.0e-70 271.6 290 47.2
MD02G1231900 Malus domestica HOM05D006927 ORTHO05D009065 7.1e-69 265.4 262 48.9
PRCOL_00002784 Prasinoderma coloniale HOM05D006927 ORTHO05D009065 3.0e-67 260.0 309 45.0
Cre07.g313550 Chlamydomonas reinhardtii HOM05D006927 ORTHO05D009065 1.5e-66 257.7 301 43.9
Sabra13G0061600 Salix brachista HOM05D006927 ORTHO05D009065 4.3e-66 256.1 347 42.4
Psat5g000960 Pisum sativum HOM05D006927 ORTHO05D009065 6.9e-64 248.8 238 51.3
Dinv43521 Davidia involucrata HOM05D006927 ORTHO05D009065 2.7e-60 236.9 191 56.5
BraA02t05404Z Brassica rapa HOM05D006927 ORTHO05D009065 1.5e-58 231.1 189 56.1
Nn1g09344 Nelumbo nucifera HOM05D006927 ORTHO05D009065 2.5e-58 230.3 186 56.5
BolC2t06832H Brassica oleracea HOM05D006927 ORTHO05D009065 3.3e-58 229.9 192 56.2
Oeu034881.1 Olea europaea HOM05D006927 ORTHO05D009065 2.2e-57 227.3 179 55.9
CiPaw.02G047300 Carya illinoinensis HOM05D006927 ORTHO05D009065 5.5e-53 212.6 165 58.8
HPP92_025548 Vanilla planifolia HOM05D006927 ORTHO05D009065 2.7e-52 210.3 194 51.5
Actinidia31733 Actinidia chinensis HOM05D006927 ORTHO05D009065 3.9e-51 206.5 194 51.0
Aqoxy116s007 Aquilegia oxysepala HOM05D006927 ORTHO05D009065 6.3e-49 199.1 276 44.2
CARHR195510 Cardamine hirsuta HOM05D006927 ORTHO05D009065 3.8e-46 189.9 174 53.4
unitig_26.g8847 Utricularia gibba HOM05D006927 ORTHO05D009065 2.8e-41 173.7 149 56.4
Gohir.D11G237100 Gossypium hirsutum HOM05D006927 ORTHO05D009065 2.4e-40 170.6 121 65.3
MCO02G275 Micromonas commoda HOM05D006927 ORTHO05D044296 6.1e-36 156.0 339 31.6
PRCOL_00000683 Prasinoderma coloniale HOM05D006927 ORTHO05D009065 2.0e-31 141.0 295 33.6
Cre01.g025150 Chlamydomonas reinhardtii HOM05D006927 ORTHO05D044296 1.3e-30 138.3 345 29.0
unitig_26.g8846 Utricularia gibba HOM05D006927 ORTHO05D009065 2.2e-25 120.9 83 60.2
SEGI_38351 Sequoiadendron giganteum HOM05D006927 ORTHO05D009065 4.5e-23 113.2 66 74.2
Actinidia34774 Actinidia chinensis HOM05D006927 ORTHO05D009065 3.0e-19 100.5 97 49.5
Thecc.05G234900 Theobroma cacao HOM05D006927 ORTHO05D009065 5.7e-18 96.3 60 61.7
BcaB08g36753 Brassica carinata HOM05D006927 ORTHO05D009065 1.1e-16 92.0 117 46.2
HPP92_025520 Vanilla planifolia HOM05D006927 ORTHO05D009065 5.6e-13 79.7 171 31.0
AagrBONN_evm.TU.Sc2ySwM_368.1936 Anthoceros agrestis HOM05D006927 ORTHO05D071668 2.8e-12 77.4 280 23.9
PRCOL_00002844 Prasinoderma coloniale HOM05D006927 ORTHO05D049054 6.8e-11 72.8 131 35.1
CBR_g4745 Chara braunii HOM05D000019 ORTHO05D000002 4.4e-10 70.1 64 42.2
MCO12G090 Micromonas commoda HOM05D006927 ORTHO05D049054 3.5e-07 60.5 357 23.2


User provided reference genes

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