Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c20_10790 Physcomitrium patens HOM05D004123 ORTHO05D004768 9.5e-182 640.2 358 100.0
Pp3c23_800 Physcomitrium patens HOM05D059517 ORTHO05D004768 2.4e-92 343.2 361 55.1
Pp3c23_861 Physcomitrium patens HOM05D059517 ORTHO05D004768 2.1e-19 100.9 211 33.6
PSO063G6205 Papaver somniferum HOM05D004123 ORTHO05D004768 5.1e-10 69.7 71 54.9
PSO782G4509 Papaver somniferum HOM05D004123 ORTHO05D004768 5.1e-10 69.7 71 54.9
Lalb_Chr10g0100051 Lupinus albus HOM05D004123 ORTHO05D004768 6.7e-10 69.3 65 58.5
Rhsim09G0107600 Rhododendron simsii HOM05D004123 ORTHO05D004768 1.1e-09 68.6 96 50.0
SMO266G0088 Selaginella moellendorffii HOM05D004123 ORTHO05D004768 1.1e-09 68.6 39 82.1
SMO288G0011 Selaginella moellendorffii HOM05D004123 ORTHO05D004768 1.1e-09 68.6 39 82.1
CARHR061260 Cardamine hirsuta HOM05D004123 ORTHO05D004768 2.0e-09 67.8 66 57.6
MD13G1040900 Malus domestica HOM05D004123 ORTHO05D004768 2.0e-09 67.8 65 60.0
Sp5g23550 Schrenkiella parvula HOM05D004123 ORTHO05D004768 2.0e-09 67.8 66 57.6
MELO3C003021.2 Cucumis melo HOM05D004123 ORTHO05D004768 2.6e-09 67.4 77 51.9
CsaV3_5G023110 Cucumis sativus L. HOM05D004123 ORTHO05D004768 2.6e-09 67.4 77 51.9
AL2G27340 Arabidopsis lyrata HOM05D004123 ORTHO05D004768 3.3e-09 67.0 76 50.0
AT1G68480 Arabidopsis thaliana HOM05D004123 ORTHO05D004768 3.3e-09 67.0 76 50.0
Thhalv10019033m.g Eutrema salsugineum HOM05D004123 ORTHO05D004768 3.3e-09 67.0 76 50.0
HanXRQChr08g0213911 Helianthus annuus HOM05D004123 ORTHO05D004768 3.3e-09 67.0 79 48.1
Lj6C757T7 Lonicera japonica HOM05D004123 ORTHO05D004768 3.3e-09 67.0 50 66.0
Duzib268G1624 Durio zibethinus HOM05D004123 ORTHO05D004768 4.4e-09 66.6 65 58.5
Gohir.A04G098200 Gossypium hirsutum HOM05D004123 ORTHO05D004768 4.4e-09 66.6 66 57.6
Gohir.D04G137875 Gossypium hirsutum HOM05D004123 ORTHO05D004768 4.4e-09 66.6 66 57.6
Gorai.012G122600 Gossypium raimondii HOM05D004123 ORTHO05D004768 4.4e-09 66.6 66 57.6
Oeu043592.1 Olea europaea HOM05D004123 ORTHO05D004768 4.4e-09 66.6 76 47.4
SHI16201 Sapria himalayana HOM05D004123 ORTHO05D004768 4.4e-09 66.6 85 44.7
Carub.0002s1499 Capsella rubella HOM05D004123 ORTHO05D004768 5.7e-09 66.2 78 51.3
DCAR_026735 Daucus carota HOM05D004123 ORTHO05D004768 5.7e-09 66.2 64 57.8
FvH4_4g27300 Fragaria vesca HOM05D004123 ORTHO05D004768 5.7e-09 66.2 66 56.1
Potri.008G121200 Populus trichocarpa HOM05D004123 ORTHO05D004768 5.7e-09 66.2 68 55.9
TWI75G1885 Tripterygium wilfordii HOM05D004123 ORTHO05D004768 5.7e-09 66.2 71 49.3
HPP92_004806 Vanilla planifolia HOM05D004123 ORTHO05D004768 5.7e-09 66.2 47 68.1
HPP92_004807 Vanilla planifolia HOM05D004123 ORTHO05D004768 5.7e-09 66.2 47 68.1
HanXRQChr09g0252701 Helianthus annuus HOM05D004123 ORTHO05D004768 7.4e-09 65.9 47 68.1
Lsat_1_v5_gn_3_59041 Lactuca sativa HOM05D004123 ORTHO05D004768 7.4e-09 65.9 75 50.7
Manes.06G067400 Manihot esculenta HOM05D004123 ORTHO05D004768 7.4e-09 65.9 68 55.9
Nn3g17856 Nelumbo nucifera HOM05D004123 ORTHO05D004768 7.4e-09 65.9 66 57.6
Nn4g23857 Nelumbo nucifera HOM05D004123 ORTHO05D004768 7.4e-09 65.9 66 57.6
THA.LOC104805254 Tarenaya hassleriana HOM05D004123 ORTHO05D004768 7.4e-09 65.9 74 54.1
THA.LOC104821930 Tarenaya hassleriana HOM05D004123 ORTHO05D004768 7.4e-09 65.9 76 47.4
unitig_22.g6557 Utricularia gibba HOM05D004123 ORTHO05D004768 7.4e-09 65.9 79 51.9
CAN.G610.78 Capsicum annuum HOM05D004123 ORTHO05D004768 9.7e-09 65.5 66 56.1
Cpa.g.sc350.1 Carica papaya HOM05D004123 ORTHO05D004768 9.7e-09 65.5 66 56.1
Lalb_Chr21g0308891 Lupinus albus HOM05D004123 ORTHO05D004768 9.7e-09 65.5 65 56.9
Thecc.02G229500 Theobroma cacao HOM05D004123 ORTHO05D004768 9.7e-09 65.5 66 56.1
unitig_8.g3254 Utricularia gibba HOM05D004123 ORTHO05D004768 9.7e-09 65.5 79 48.1
AagrBONN_evm.TU.Sc2ySwM_228.1523 Anthoceros agrestis HOM05D004123 ORTHO05D004768 1.3e-08 65.1 99 43.4
Ciclev10018307m.g Citrus clementina HOM05D004123 ORTHO05D004768 1.3e-08 65.1 61 59.0
Duzib251G0145 Durio zibethinus HOM05D004123 ORTHO05D004768 1.3e-08 65.1 65 56.9
Lsat_1_v5_gn_8_40481 Lactuca sativa HOM05D004123 ORTHO05D004768 1.3e-08 65.1 67 56.7
Lj2g0014688 Lotus japonicus HOM05D004123 ORTHO05D004768 1.3e-08 65.1 94 45.7
MD16G1042200 Malus domestica HOM05D004123 ORTHO05D004768 1.3e-08 65.1 65 56.9
Sed0004295 Sechium edule HOM05D004123 ORTHO05D004768 1.3e-08 65.1 76 52.6
Sed0009095 Sechium edule HOM05D004123 ORTHO05D004768 1.3e-08 65.1 85 48.2
TPR.G971 Trifolium pratense HOM05D004123 ORTHO05D004768 1.3e-08 65.1 51 62.7
Zm00001eb335100 Zea mays HOM05D004123 ORTHO05D004768 1.3e-08 65.1 45 66.7
Ah.03g137600 Amaranthus hybridus HOM05D004123 ORTHO05D004768 1.7e-08 64.7 69 53.6
CiPaw.15G085900 Carya illinoinensis HOM05D004123 ORTHO05D004768 1.7e-08 64.7 68 55.9
CDE12G0443 Ceratophyllum demersum HOM05D004123 ORTHO05D004768 1.7e-08 64.7 56 57.1
vmacro10561 Vaccinium macrocarpon HOM05D004123 ORTHO05D004768 1.7e-08 64.7 66 56.1
BcaC08g46276 Brassica carinata HOM05D004123 ORTHO05D004768 2.2e-08 64.3 78 50.0
Manes.14G103000 Manihot esculenta HOM05D004123 ORTHO05D004768 2.2e-08 64.3 83 47.0
Phvul.003G031000 Phaseolus vulgaris HOM05D004123 ORTHO05D004768 2.2e-08 64.3 96 47.9
Prupe.1G311900 Prunus persica HOM05D004123 ORTHO05D004768 2.2e-08 64.3 67 55.2
ATR1125G037 Amborella trichopoda HOM05D004123 ORTHO05D004768 2.8e-08 63.9 71 50.7
Migut.E00347 Erythranthe guttata HOM05D004123 ORTHO05D004768 2.8e-08 63.9 48 64.6
Lsat_1_v5_gn_8_41281 Lactuca sativa HOM05D004123 ORTHO05D004768 2.8e-08 63.9 67 55.2
SalBow8G0349 Salvia bowleyana HOM05D004123 ORTHO05D004768 2.8e-08 63.9 82 45.1
TAR629G2125 Trochodendron aralioides HOM05D004946 ORTHO05D006101 2.8e-08 63.9 42 71.4
A07p34880 Brassica napus HOM05D004123 ORTHO05D004768 3.7e-08 63.5 94 44.7
C06p41480 Brassica napus HOM05D004123 ORTHO05D004768 3.7e-08 63.5 94 43.6
BolC6t39275H Brassica oleracea HOM05D004123 ORTHO05D004768 3.7e-08 63.5 94 43.6
Os01g0129200 Oryza sativa ssp. japonica HOM05D004123 ORTHO05D004768 3.7e-08 63.5 49 67.3
Sc04g0006360 Simmondsia chinensis HOM05D004123 ORTHO05D004768 3.7e-08 63.5 53 58.5
Actinidia14896 Actinidia chinensis HOM05D004123 ORTHO05D004768 4.8e-08 63.2 67 55.2
MSTRG.13535 Avicennia marina HOM05D004123 ORTHO05D004768 4.8e-08 63.2 97 45.4
BcaB03g15826 Brassica carinata HOM05D004123 ORTHO05D004768 4.8e-08 63.2 82 47.6
PGR119G1213 Punica granatum HOM05D004123 ORTHO05D004768 4.8e-08 63.2 45 64.4
Solyc05g009380.4 Solanum lycopersicum HOM05D004123 ORTHO05D004768 4.8e-08 63.2 40 72.5
BcaB05g24386 Brassica carinata HOM05D004123 ORTHO05D004768 6.3e-08 62.8 66 54.5
Cc11_g10070 Coffea canephora HOM05D004123 ORTHO05D004768 6.3e-08 62.8 65 53.8
Eucgr.G02316 Eucalyptus grandis HOM05D004123 ORTHO05D004768 6.3e-08 62.8 40 72.5
Medtr1g110710 Medicago truncatula HOM05D004123 ORTHO05D004768 6.3e-08 62.8 95 48.4
Psat6g227440 Pisum sativum HOM05D004123 ORTHO05D004768 6.3e-08 62.8 95 48.4
BolC2t08567H Brassica oleracea HOM05D004123 ORTHO05D004768 8.2e-08 62.4 90 42.2
CiPaw.16G065300 Carya illinoinensis HOM05D004123 ORTHO05D004768 8.2e-08 62.4 96 44.8
Duzib248G0829 Durio zibethinus HOM05D004123 ORTHO05D004768 8.2e-08 62.4 94 44.7
Gohir.A03G147300 Gossypium hirsutum HOM05D004123 ORTHO05D004768 8.2e-08 62.4 77 51.9
TWI31G0276 Tripterygium wilfordii HOM05D004123 ORTHO05D004768 8.2e-08 62.4 136 36.0
Glyma.10G273800 Glycine max HOM05D004123 ORTHO05D004768 1.1e-07 62.0 80 50.0
Gorai.005G191500 Gossypium raimondii HOM05D004123 ORTHO05D004768 1.1e-07 62.0 68 54.4
Lj5g0020149 Lotus japonicus HOM05D004123 ORTHO05D004768 1.1e-07 62.0 65 55.4
Phvul.007G027700 Phaseolus vulgaris HOM05D004123 ORTHO05D004768 1.1e-07 62.0 80 50.0
unitig_747.g21201 Utricularia gibba HOM05D004123 ORTHO05D004768 1.1e-07 62.0 100 44.0
Aa31LG1G1560 Aethionema arabicum HOM05D004123 ORTHO05D004768 1.4e-07 61.6 53 56.6
A02p15050 Brassica napus HOM05D004123 ORTHO05D004768 1.4e-07 61.6 76 47.4
TAR374G0469 Trochodendron aralioides HOM05D004123 ORTHO05D004768 1.4e-07 61.6 129 40.3
Aqoxy3G00286 Aquilegia oxysepala HOM05D004123 ORTHO05D004768 1.8e-07 61.2 78 51.3
AL1G25160 Arabidopsis lyrata HOM05D004123 ORTHO05D004768 2.4e-07 60.8 39 71.8
AT1G13400 Arabidopsis thaliana HOM05D004123 ORTHO05D004768 2.4e-07 60.8 39 71.8
Carub.0001s1311 Capsella rubella HOM05D004123 ORTHO05D004768 2.4e-07 60.8 39 71.8
Glyma.20G116200 Glycine max HOM05D004123 ORTHO05D004768 2.4e-07 60.8 94 44.7
CARHR013770 Cardamine hirsuta HOM05D004123 ORTHO05D004768 3.1e-07 60.5 53 58.5
Sp1g11890 Schrenkiella parvula HOM05D004123 ORTHO05D004768 3.1e-07 60.5 61 52.5
CANSAT01G1980 Cannabis sativa HOM05D004123 ORTHO05D004768 4.1e-07 60.1 103 39.8
Gohir.D02G170500 Gossypium hirsutum HOM05D004123 ORTHO05D004768 4.1e-07 60.1 96 46.9
QL01p041642 Quercus lobata HOM05D004123 ORTHO05D004768 4.1e-07 60.1 102 44.1
Thhalv10009343m.g Eutrema salsugineum HOM05D004123 ORTHO05D004768 5.3e-07 59.7 39 71.8
TPR.G18823 Trifolium pratense HOM05D004123 ORTHO05D004768 5.3e-07 59.7 106 43.4
Pp3c23_960 Physcomitrium patens HOM05D004123 ORTHO05D004768 7.0e-07 59.3 66 50.0
Pp3c3_21050 Physcomitrium patens HOM05D004123 ORTHO05D004768 7.0e-07 59.3 98 41.8
GSVIVG01011890001 Vitis vinifera HOM05D004123 ORTHO05D004768 7.0e-07 59.3 67 50.7
C02p24750 Brassica napus HOM05D004123 ORTHO05D004768 9.1e-07 58.9 67 47.8
Pp3c23_2190 Physcomitrium patens HOM05D004123 ORTHO05D004768 1.5e-06 58.2 53 58.5
MSTRG.844 Avicennia marina HOM05D004123 ORTHO05D004768 3.5e-06 57.0 158 34.2
Lj5g0023256 Lotus japonicus HOM05D004123 ORTHO05D004768 3.5e-06 57.0 83 44.6
SEGI_27536 Sequoiadendron giganteum HOM05D004123 ORTHO05D000239 3.5e-06 57.0 48 60.4
FAN12G0145 Fragaria x ananassa HOM05D004123 ORTHO05D004768 5.9e-06 56.2 52 55.8
FAN12G0921 Fragaria x ananassa HOM05D004123 ORTHO05D004768 5.9e-06 56.2 52 55.8
FAN22G2099 Fragaria x ananassa HOM05D004123 ORTHO05D004768 5.9e-06 56.2 52 55.8


User provided reference genes

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