Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c20_10060 Physcomitrium patens HOM05D005357 ORTHO05D006354 4.2e-260 901.0 498 100.0
Pp3c23_4130 Physcomitrium patens HOM05D005357 ORTHO05D006354 4.7e-163 578.6 505 64.6
Pp3c8_18230 Physcomitrium patens HOM05D005357 ORTHO05D006354 1.3e-56 224.9 542 34.3
Mapoly0068s0057 Marchantia polymorpha HOM05D005357 ORTHO05D006354 3.9e-40 170.2 168 51.2
CDE03G0086 Ceratophyllum demersum HOM05D005357 ORTHO05D006354 6.2e-38 162.9 204 43.1
Aa31LG1G22800 Aethionema arabicum HOM05D005357 ORTHO05D006354 1.4e-37 161.8 209 39.7
BraA10t45393Z Brassica rapa HOM05D005357 ORTHO05D006354 6.9e-37 159.5 210 41.0
CDE04G3126 Ceratophyllum demersum HOM05D005357 ORTHO05D006354 6.9e-37 159.5 206 41.7
Zm00001eb221140 Zea mays HOM05D005357 ORTHO05D006354 6.9e-37 159.5 244 40.2
PGSC0003DMG402020324 Solanum tuberosum HOM05D005357 ORTHO05D006354 9.0e-37 159.1 221 40.3
AL6G11040 Arabidopsis lyrata HOM05D005357 ORTHO05D006354 1.2e-36 158.7 212 40.6
C09p74540 Brassica napus HOM05D005357 ORTHO05D006354 1.2e-36 158.7 212 41.0
BolC9t60186H Brassica oleracea HOM05D005357 ORTHO05D006354 1.5e-36 158.3 212 41.0
CARHR211480 Cardamine hirsuta HOM05D005357 ORTHO05D006354 1.5e-36 158.3 242 38.4
SalBow3G4061 Salvia bowleyana HOM05D005357 ORTHO05D006354 1.5e-36 158.3 243 40.3
AT5G01160 Arabidopsis thaliana HOM05D005357 ORTHO05D006354 2.0e-36 157.9 209 40.7
Thhalv10014073m.g Eutrema salsugineum HOM05D005357 ORTHO05D006354 2.0e-36 157.9 219 41.1
Sp6g40520 Schrenkiella parvula HOM05D005357 ORTHO05D006354 2.6e-36 157.5 228 40.4
A10p33610 Brassica napus HOM05D005357 ORTHO05D006354 5.8e-36 156.4 212 40.6
Zm00001eb044800 Zea mays HOM05D005357 ORTHO05D006354 5.8e-36 156.4 239 41.4
BcaNung02762 Brassica carinata HOM05D005357 ORTHO05D006354 7.6e-36 156.0 252 37.7
SEGI_31043 Sequoiadendron giganteum HOM05D005357 ORTHO05D006354 7.6e-36 156.0 189 43.9
BcaB05g21942 Brassica carinata HOM05D005357 ORTHO05D006354 9.9e-36 155.6 310 33.9
RcHm_v2.0_Chr3g0463991 Rosa chinensis HOM05D005357 ORTHO05D006354 9.9e-36 155.6 227 38.3
Carub.0006s0073 Capsella rubella HOM05D005357 ORTHO05D006354 2.2e-35 154.5 251 38.2
Actinidia13789 Actinidia chinensis HOM05D005357 ORTHO05D006354 3.8e-35 153.7 230 37.4
Haze_20938 Corylus avellana HOM05D005357 ORTHO05D006354 3.8e-35 153.7 245 38.8
Potri.006G095600 Populus trichocarpa HOM05D005357 ORTHO05D006354 3.8e-35 153.7 188 41.5
Duzib093G0024 Durio zibethinus HOM05D005357 ORTHO05D006354 4.9e-35 153.3 146 47.9
FAN05G3392 Fragaria x ananassa HOM05D005357 ORTHO05D006354 4.9e-35 153.3 227 37.9
MD04G1145200 Malus domestica HOM05D005357 ORTHO05D006354 4.9e-35 153.3 226 38.5
Duzib128G1243 Durio zibethinus HOM05D005357 ORTHO05D006354 6.4e-35 152.9 146 47.9
FvH4_6g12190 Fragaria vesca HOM05D005357 ORTHO05D006354 6.4e-35 152.9 227 37.9
FAN09G0023 Fragaria x ananassa HOM05D005357 ORTHO05D006354 6.4e-35 152.9 227 37.9
FAN14G1666 Fragaria x ananassa HOM05D005357 ORTHO05D006354 6.4e-35 152.9 227 37.9
FAN14G2781 Fragaria x ananassa HOM05D005357 ORTHO05D006354 6.4e-35 152.9 227 37.9
Sc05g0000650 Simmondsia chinensis HOM05D005357 ORTHO05D006354 6.4e-35 152.9 199 41.2
Aqoxy1G00739 Aquilegia oxysepala HOM05D005357 ORTHO05D006354 8.4e-35 152.5 195 42.6
CANSAT35G1827 Cannabis sativa HOM05D005357 ORTHO05D006354 8.4e-35 152.5 265 37.4
Gohir.D09G158500 Gossypium hirsutum HOM05D005357 ORTHO05D006354 8.4e-35 152.5 146 47.9
Gorai.006G180200 Gossypium raimondii HOM05D005357 ORTHO05D006354 8.4e-35 152.5 146 47.9
PSO384G3148 Papaver somniferum HOM05D005357 ORTHO05D006354 8.4e-35 152.5 290 35.9
QL07p036221 Quercus lobata HOM05D005357 ORTHO05D006354 8.4e-35 152.5 273 35.9
Actinidia29139 Actinidia chinensis HOM05D005357 ORTHO05D006354 1.1e-34 152.1 264 34.1
CAN.G284.13 Capsicum annuum HOM05D005357 ORTHO05D006354 1.1e-34 152.1 304 35.5
Ca_09168_v3 Cicer arietinum L. HOM05D005357 ORTHO05D006354 1.1e-34 152.1 177 44.1
Medtr7g066710 Medicago truncatula HOM05D005357 ORTHO05D006354 1.1e-34 152.1 277 36.8
BcaNung02766 Brassica carinata HOM05D005357 ORTHO05D006354 1.4e-34 151.8 119 54.6
TAR633G0560 Trochodendron aralioides HOM05D005357 ORTHO05D006354 1.4e-34 151.8 204 40.7
Cpa.g.sc312.3 Carica papaya HOM05D005357 ORTHO05D006354 1.9e-34 151.4 188 42.6
AUR62011861 Chenopodium quinoa HOM05D005357 ORTHO05D006354 1.9e-34 151.4 300 35.7
COL.COLO4_14619 Corchorus olitorius HOM05D005357 ORTHO05D006354 1.9e-34 151.4 216 39.4
Lj3g0024478 Lotus japonicus HOM05D005357 ORTHO05D006354 1.9e-34 151.4 275 36.4
TWI74G0304 Tripterygium wilfordii HOM05D005357 ORTHO05D006354 1.9e-34 151.4 193 42.0
GSVIVG01034021001 Vitis vinifera HOM05D005357 ORTHO05D006354 1.9e-34 151.4 165 45.5
arahy.Tifrunner.gnm1.ann1.H8VZ0K Arachis hypogaea HOM05D005357 ORTHO05D006354 2.4e-34 151.0 220 40.0
Manes.08G086900 Manihot esculenta HOM05D005357 ORTHO05D006354 2.4e-34 151.0 221 39.8
PSO585G0030 Papaver somniferum HOM05D005357 ORTHO05D006354 2.4e-34 151.0 290 34.8
Sopen09g006960 Solanum pennellii HOM05D005357 ORTHO05D006354 2.4e-34 151.0 215 40.9
DCAR_005589 Daucus carota HOM05D005357 ORTHO05D006354 3.2e-34 150.6 211 42.7
Nn1g02852 Nelumbo nucifera HOM05D005357 ORTHO05D006354 3.2e-34 150.6 266 37.6
SGA_v2.0_scaffold75G24995 Striga asiatica HOM05D005357 ORTHO05D006354 3.2e-34 150.6 213 43.2
THA.LOC104827038 Tarenaya hassleriana HOM05D005357 ORTHO05D006354 3.2e-34 150.6 200 40.5
Cfa017262 Carpinus fangiana HOM05D005357 ORTHO05D006354 4.2e-34 150.2 247 37.7
Gohir.A09G163000 Gossypium hirsutum HOM05D005357 ORTHO05D006354 4.2e-34 150.2 146 47.9
Medtr7g056183 Medicago truncatula HOM05D005357 ORTHO05D006354 4.2e-34 150.2 277 37.5
Duzib106G1773 Durio zibethinus HOM05D005357 ORTHO05D006354 5.4e-34 149.8 146 45.9
FAN02G3235 Fragaria x ananassa HOM05D005357 ORTHO05D006354 5.4e-34 149.8 227 37.4
Glyma.18G195500 Glycine max HOM05D005357 ORTHO05D006354 7.1e-34 149.4 221 38.5
MBI06_g17209_MAGBIO Magnolia biondii HOM05D005357 ORTHO05D006354 7.1e-34 149.4 280 36.8
MSTRG.5603 Avicennia marina HOM05D005357 ORTHO05D006354 9.3e-34 149.1 256 36.7
CiPaw.09G205000 Carya illinoinensis HOM05D005357 ORTHO05D006354 1.6e-33 148.3 219 40.2
Glyma.07G144300 Glycine max HOM05D005357 ORTHO05D006354 1.6e-33 148.3 223 38.1
Prupe.6G269500 Prunus persica HOM05D005357 ORTHO05D006354 1.6e-33 148.3 262 36.3
TWI77G0073 Tripterygium wilfordii HOM05D005357 ORTHO05D006354 1.6e-33 148.3 204 40.2
HPP92_021066 Vanilla planifolia HOM05D005357 ORTHO05D006354 1.6e-33 148.3 257 38.5
Ah.11g049570 Amaranthus hybridus HOM05D005357 ORTHO05D006354 2.1e-33 147.9 192 42.2
MD12G1159000 Malus domestica HOM05D005357 ORTHO05D006354 2.1e-33 147.9 226 38.5
vmacro01296 Vaccinium macrocarpon HOM05D005357 ORTHO05D006354 2.7e-33 147.5 226 39.4
AUR62024704 Chenopodium quinoa HOM05D005357 ORTHO05D006354 3.5e-33 147.1 300 34.0
Gohir.A04G087700 Gossypium hirsutum HOM05D005357 ORTHO05D006354 3.5e-33 147.1 157 45.9
Gorai.012G111100 Gossypium raimondii HOM05D005357 ORTHO05D006354 3.5e-33 147.1 157 45.9
Hma1.2p1_0703F.1_g206335 Hydrangea macrophylla HOM05D005357 ORTHO05D006354 3.5e-33 147.1 187 40.1
Peaxi162Scf00141g00133 Petunia axillaris HOM05D005357 ORTHO05D006354 3.5e-33 147.1 306 36.3
EL10As5g23477 Beta vulgaris HOM05D005357 ORTHO05D006354 4.6e-33 146.7 268 36.6
Migut.J00234 Erythranthe guttata HOM05D005357 ORTHO05D006354 4.6e-33 146.7 247 36.8
Thecc.05G023500 Theobroma cacao HOM05D005357 ORTHO05D006354 6.0e-33 146.4 214 36.9
ClCG10G021740 Citrullus lanatus HOM05D005357 ORTHO05D006354 7.9e-33 146.0 203 39.4
Nitab4.5_0006254g0010 Nicotiana tabacum HOM05D005357 ORTHO05D006354 7.9e-33 146.0 267 34.5
CsaV3_3G034230 Cucumis sativus L. HOM05D005357 ORTHO05D006354 1.0e-32 145.6 203 38.9
DCAR_008325 Daucus carota HOM05D005357 ORTHO05D006354 1.0e-32 145.6 202 40.6
Lalb_Chr01g0022881 Lupinus albus HOM05D005357 ORTHO05D006354 1.0e-32 145.6 218 38.1
Lsat_1_v5_gn_5_155380 Lactuca sativa HOM05D005357 ORTHO05D006354 1.3e-32 145.2 199 40.2
TAR636G3085 Trochodendron aralioides HOM05D005357 ORTHO05D006354 1.3e-32 145.2 204 41.2
HanXRQChr13g0406371 Helianthus annuus HOM05D005357 ORTHO05D006354 1.8e-32 144.8 218 37.2
MELO3C009198.2 Cucumis melo HOM05D005357 ORTHO05D006354 2.3e-32 144.4 226 35.8
Dinv37091 Davidia involucrata HOM05D005357 ORTHO05D006354 2.3e-32 144.4 225 36.0
Lalb_Chr03g0042941 Lupinus albus HOM05D005357 ORTHO05D006354 2.3e-32 144.4 188 42.0
Hund02920 Selenicereus undatus HOM05D005357 ORTHO05D006354 3.0e-32 144.1 272 34.9
HanXRQChr13g0397921 Helianthus annuus HOM05D005357 ORTHO05D006354 5.1e-32 143.3 216 37.5
Os10g0494500 Oryza sativa ssp. japonica HOM05D005357 ORTHO05D006354 6.7e-32 142.9 235 39.1
Sed0007832 Sechium edule HOM05D005357 ORTHO05D006354 6.7e-32 142.9 218 38.5
TPR.G1557 Trifolium pratense HOM05D005357 ORTHO05D006354 1.1e-31 142.1 275 34.9
ECA248G2096 Erigeron canadensis HOM05D005357 ORTHO05D006354 1.5e-31 141.7 208 35.1
Nitab4.5_0000008g0560 Nicotiana tabacum HOM05D005357 ORTHO05D006354 1.5e-31 141.7 292 33.9
Phvul.008G108800 Phaseolus vulgaris HOM05D005357 ORTHO05D006354 1.5e-31 141.7 222 36.9
Hund09607 Selenicereus undatus HOM05D005357 ORTHO05D006354 1.5e-31 141.7 250 34.0
Lj2A78G31 Lonicera japonica HOM05D005357 ORTHO05D006354 3.3e-31 140.6 220 36.8
arahy.Tifrunner.gnm1.ann1.5ZZ6F4 Arachis hypogaea HOM05D005357 ORTHO05D006354 7.4e-31 139.4 239 36.8
SGA_v2.0_scaffold85G26772 Striga asiatica HOM05D005357 ORTHO05D006354 9.6e-31 139.0 255 33.7
Ciclev10011563m.g Citrus clementina HOM05D005357 ORTHO05D006354 1.3e-30 138.7 277 31.8
Cc06_g01760 Coffea canephora HOM05D005357 ORTHO05D006354 2.8e-30 137.5 189 39.7
HanXRQChr13g0397571 Helianthus annuus HOM05D005357 ORTHO05D006354 8.1e-30 136.0 242 35.1
Oeu030537.4 Olea europaea HOM05D005357 ORTHO05D006354 1.2e-28 132.1 159 40.9
Oeu044369.1 Olea europaea HOM05D005357 ORTHO05D006354 7.6e-28 129.4 243 32.9
Gohir.D04G128100 Gossypium hirsutum HOM05D005357 ORTHO05D006354 2.2e-27 127.9 157 43.9
PGR031G1436 Punica granatum HOM05D005357 ORTHO05D006354 3.2e-26 124.0 285 32.3
CBR_g24154 Chara braunii HOM05D005357 ORTHO05D006354 5.5e-26 123.2 121 42.1
unitig_22.g6590 Utricularia gibba HOM05D005357 ORTHO05D006354 3.5e-25 120.6 239 34.7
SHI12776 Sapria himalayana HOM05D005357 ORTHO05D006354 1.1e-23 115.5 253 34.8
Eucgr.B02762 Eucalyptus grandis HOM05D005357 ORTHO05D006354 1.2e-20 105.5 205 33.7
SEGI_08495 Sequoiadendron giganteum HOM05D054687 ORTHO05D006354 2.2e-19 101.3 71 59.2
Sabra06G0073400 Salix brachista HOM05D005357 ORTHO05D006354 8.7e-16 89.4 284 25.7
Dinv03649 Davidia involucrata HOM05D005357 ORTHO05D006354 5.7e-15 86.7 139 37.4
Atru.chr8.2134 Acer truncatum HOM05D005357 ORTHO05D006354 1.6e-14 85.1 76 50.0
Psat3g131000 Pisum sativum HOM05D005357 ORTHO05D006354 4.8e-14 83.6 137 38.7
ATR0605G041 Amborella trichopoda HOM05D005357 ORTHO05D006354 8.5e-11 72.8 145 32.4
Solyc09g013120.4 Solanum lycopersicum HOM05D005357 ORTHO05D006354 1.9e-10 71.6 125 36.8


User provided reference genes

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