Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c1_9780 Physcomitrium patens HOM05D006709 ORTHO05D008329 2.4e-44 181.8 91 100.0
Mapoly0015s0105 Marchantia polymorpha HOM05D006709 ORTHO05D008329 1.2e-19 99.8 90 54.4
AagrBONN_evm.TU.Sc2ySwM_344.3753 Anthoceros agrestis HOM05D006709 ORTHO05D008329 3.8e-18 94.7 89 52.8
Sc15g0004050 Simmondsia chinensis HOM05D006709 ORTHO05D008329 3.8e-18 94.7 85 54.1
ATR0605G117 Amborella trichopoda HOM05D006709 ORTHO05D008329 2.5e-17 92.0 86 53.5
Lsat_1_v5_gn_9_48241 Lactuca sativa HOM05D006709 ORTHO05D008329 7.2e-17 90.5 82 54.9
CDE05G2376 Ceratophyllum demersum HOM05D006709 ORTHO05D008329 1.6e-16 89.4 85 50.6
ECA233G3448 Erigeron canadensis HOM05D006709 ORTHO05D008329 2.7e-16 88.6 85 51.8
Dinv05492 Davidia involucrata HOM05D006709 ORTHO05D008329 4.6e-16 87.8 86 52.3
HanXRQChr12g0367591 Helianthus annuus HOM05D006709 ORTHO05D008329 4.6e-16 87.8 85 48.2
Hund05070 Selenicereus undatus HOM05D006709 ORTHO05D008329 6.1e-16 87.4 79 57.0
Actinidia15528 Actinidia chinensis HOM05D006709 ORTHO05D008329 1.0e-15 86.7 86 50.0
Actinidia17082 Actinidia chinensis HOM05D006709 ORTHO05D008329 1.0e-15 86.7 86 50.0
Os08g0512900 Oryza sativa ssp. japonica HOM05D006709 ORTHO05D008329 1.0e-15 86.7 86 47.7
CAN.G1330.15 Capsicum annuum HOM05D006709 ORTHO05D008329 1.8e-15 85.9 86 50.0
Cpa.g.sc26.6 Carica papaya HOM05D006709 ORTHO05D008329 1.8e-15 85.9 86 54.7
MBI04_g31214_MAGBIO Magnolia biondii HOM05D006709 ORTHO05D008329 1.8e-15 85.9 86 48.8
vmacro21761 Vaccinium macrocarpon HOM05D006709 ORTHO05D008329 1.8e-15 85.9 86 50.0
Duzib151G1059 Durio zibethinus HOM05D006709 ORTHO05D008329 2.3e-15 85.5 84 53.6
Lsat_1_v5_gn_8_26041 Lactuca sativa HOM05D006709 ORTHO05D008329 2.3e-15 85.5 85 49.4
Manes.18G001600 Manihot esculenta HOM05D006709 ORTHO05D008329 2.3e-15 85.5 86 52.3
GSVIVG01013436001 Vitis vinifera HOM05D006709 ORTHO05D008329 2.3e-15 85.5 86 50.0
CSS0027441 Camellia sinensis var. sinensis HOM05D006709 ORTHO05D008329 3.0e-15 85.1 86 48.8
CSS0014821 Camellia sinensis var. sinensis HOM05D006709 ORTHO05D008329 5.1e-15 84.3 86 48.8
COL.COLO4_12285 Corchorus olitorius HOM05D006709 ORTHO05D008329 5.1e-15 84.3 83 54.2
Gohir.A09G212700 Gossypium hirsutum HOM05D006709 ORTHO05D008329 6.7e-15 84.0 84 53.6
Gohir.D09G206300 Gossypium hirsutum HOM05D006709 ORTHO05D008329 6.7e-15 84.0 84 53.6
Gorai.006G230200 Gossypium raimondii HOM05D006709 ORTHO05D008329 6.7e-15 84.0 84 53.6
Thecc.08G099000 Theobroma cacao HOM05D006709 ORTHO05D008329 6.7e-15 84.0 84 52.4
PSO017G0586 Papaver somniferum HOM05D006709 ORTHO05D008329 8.8e-15 83.6 89 48.3
SEGI_16420 Sequoiadendron giganteum HOM05D006709 ORTHO05D008329 8.8e-15 83.6 82 47.6
Duzib212G0839 Durio zibethinus HOM05D006709 ORTHO05D008329 1.1e-14 83.2 84 51.2
Solyc04g082800.3 Solanum lycopersicum HOM05D006709 ORTHO05D008329 1.5e-14 82.8 90 48.9
Sopen04g036440 Solanum pennellii HOM05D006709 ORTHO05D008329 1.5e-14 82.8 90 48.9
PGR031G3816 Punica granatum HOM05D006709 ORTHO05D008329 1.9e-14 82.4 86 53.5
SalBow7G4607 Salvia bowleyana HOM05D006709 ORTHO05D008329 3.3e-14 81.6 81 50.6
Thhalv10017474m.g Eutrema salsugineum HOM05D006709 ORTHO05D008329 4.3e-14 81.3 86 52.3
CANSAT78G0412 Cannabis sativa HOM05D006709 ORTHO05D008329 5.7e-14 80.9 80 53.8
Carub.0004s1522 Capsella rubella HOM05D006709 ORTHO05D008329 5.7e-14 80.9 86 50.0
Nitab4.5_0007096g0020 Nicotiana tabacum HOM05D006709 ORTHO05D008329 5.7e-14 80.9 90 48.9
Phvul.009G008700 Phaseolus vulgaris HOM05D006709 ORTHO05D008329 5.7e-14 80.9 84 50.0
Potri.005G257100 Populus trichocarpa HOM05D006709 ORTHO05D008329 5.7e-14 80.9 86 48.8
Atru.chr13.44 Acer truncatum HOM05D006709 ORTHO05D008329 7.4e-14 80.5 86 52.3
Cc10_g00210 Coffea canephora HOM05D006709 ORTHO05D008329 7.4e-14 80.5 83 48.2
Eucgr.F03607 Eucalyptus grandis HOM05D006709 ORTHO05D008329 7.4e-14 80.5 86 48.8
Aa31LG9G13520 Aethionema arabicum HOM05D006709 ORTHO05D008329 9.7e-14 80.1 86 52.3
VMungo1309G2593 Vigna mungo HOM05D006709 ORTHO05D008329 9.7e-14 80.1 87 47.1
Lj1g0007500 Lotus japonicus HOM05D006709 ORTHO05D008329 1.3e-13 79.7 81 53.1
BcaC02g07804 Brassica carinata HOM05D006709 ORTHO05D008329 1.7e-13 79.3 84 52.4
Haze_22867 Corylus avellana HOM05D006709 ORTHO05D008329 1.7e-13 79.3 86 50.0
Medtr3g116150 Medicago truncatula HOM05D006709 ORTHO05D008329 1.7e-13 79.3 79 48.1
TWI56G0059 Tripterygium wilfordii HOM05D006709 ORTHO05D008329 1.7e-13 79.3 87 48.3
AT2G33585 Arabidopsis thaliana HOM05D006709 ORTHO05D008329 2.2e-13 79.0 86 51.2
Migut.C00352 Erythranthe guttata HOM05D006709 ORTHO05D008329 2.2e-13 79.0 78 46.2
Prupe.1G298300 Prunus persica HOM05D006709 ORTHO05D008329 2.2e-13 79.0 84 50.0
QL02p015873 Quercus lobata HOM05D006709 ORTHO05D008329 2.2e-13 79.0 79 54.4
CBR_g27877 Chara braunii HOM05D006709 ORTHO05D008329 2.8e-13 78.6 74 55.4
Zm00001eb199960 Zea mays HOM05D006709 ORTHO05D008329 2.8e-13 78.6 67 52.2
arahy.Tifrunner.gnm1.ann1.6A59KD Arachis hypogaea HOM05D006709 ORTHO05D008329 3.7e-13 78.2 87 49.4
Glyma.04G014200 Glycine max HOM05D006709 ORTHO05D008329 3.7e-13 78.2 84 51.2
Lj4A4T20 Lonicera japonica HOM05D006709 ORTHO05D008329 3.7e-13 78.2 84 47.6
TAR628G1717 Trochodendron aralioides HOM05D006709 ORTHO05D008329 3.7e-13 78.2 67 55.2
HPP92_015749 Vanilla planifolia HOM05D006709 ORTHO05D008329 3.7e-13 78.2 84 50.0
arahy.Tifrunner.gnm1.ann1.ZQQY3F Arachis hypogaea HOM05D006709 ORTHO05D008329 4.8e-13 77.8 87 49.4
C04p63090 Brassica napus HOM05D006709 ORTHO05D008329 4.8e-13 77.8 84 52.4
ClCG07G009870 Citrullus lanatus HOM05D006709 ORTHO05D008329 4.8e-13 77.8 78 55.1
BcaB06g28702 Brassica carinata HOM05D006709 ORTHO05D008329 6.3e-13 77.4 84 52.4
BolC4t27784H Brassica oleracea HOM05D006709 ORTHO05D008329 6.3e-13 77.4 84 52.4
Peaxi162Scf00385g00310 Petunia axillaris HOM05D006709 ORTHO05D008329 6.3e-13 77.4 78 48.7
TPR.G38103 Trifolium pratense HOM05D006709 ORTHO05D008329 6.3e-13 77.4 79 48.1
A04p25850 Brassica napus HOM05D006709 ORTHO05D008329 8.2e-13 77.0 84 52.4
BraA04t18087Z Brassica rapa HOM05D006709 ORTHO05D008329 8.2e-13 77.0 84 52.4
Oeu035760.1 Olea europaea HOM05D006709 ORTHO05D008329 8.2e-13 77.0 94 50.0
Psat5g008400 Pisum sativum HOM05D006709 ORTHO05D008329 8.2e-13 77.0 79 50.6
EL10Ac1g01866 Beta vulgaris HOM05D006709 ORTHO05D008329 1.1e-12 76.6 86 47.7
A03p18800 Brassica napus HOM05D006709 ORTHO05D008329 1.1e-12 76.6 86 50.0
Ca_15382_v3 Cicer arietinum L. HOM05D006709 ORTHO05D008329 1.1e-12 76.6 86 47.7
MD06G1003100 Malus domestica HOM05D006709 ORTHO05D008329 1.1e-12 76.6 79 50.6
MELO3C016084.2 Cucumis melo HOM05D006709 ORTHO05D008329 1.4e-12 76.3 85 52.9
Oeu035869.2 Olea europaea HOM05D006709 ORTHO05D008329 1.4e-12 76.3 89 50.6
Ah.11g042070 Amaranthus hybridus HOM05D006709 ORTHO05D008329 1.8e-12 75.9 90 45.6
CARHR127610 Cardamine hirsuta HOM05D006709 ORTHO05D008329 1.8e-12 75.9 67 55.2
Nn5g31057 Nelumbo nucifera HOM05D006709 ORTHO05D008329 1.8e-12 75.9 113 40.7
Sed0015665 Sechium edule HOM05D006709 ORTHO05D008329 1.8e-12 75.9 78 52.6
BcaB01g03928 Brassica carinata HOM05D006709 ORTHO05D008329 2.4e-12 75.5 84 50.0
BcaC01g05832 Brassica carinata HOM05D006709 ORTHO05D008329 2.4e-12 75.5 86 48.8
C03p21970 Brassica napus HOM05D006709 ORTHO05D008329 2.4e-12 75.5 86 48.8
BolC3t14580H Brassica oleracea HOM05D006709 ORTHO05D008329 2.4e-12 75.5 86 48.8
BraA03t11140Z Brassica rapa HOM05D006709 ORTHO05D008329 2.4e-12 75.5 86 48.8
Ciclev10002952m.g Citrus clementina HOM05D006709 ORTHO05D008329 2.4e-12 75.5 79 51.9
Sabra05G0199000 Salix brachista HOM05D006709 ORTHO05D008329 3.1e-12 75.1 67 53.7
CiPaw.07G132800 Carya illinoinensis HOM05D006709 ORTHO05D008329 4.1e-12 74.7 68 54.4
AL4G29260 Arabidopsis lyrata HOM05D006709 ORTHO05D008329 5.3e-12 74.3 86 48.8
RcHm_v2.0_Chr7g0216881 Rosa chinensis HOM05D006709 ORTHO05D008329 5.3e-12 74.3 82 51.2
PGSC0003DMG400009925 Solanum tuberosum HOM05D006709 ORTHO05D008329 6.9e-12 73.9 89 46.1
Lalb_Chr03g0035821 Lupinus albus HOM05D006709 ORTHO05D008329 9.1e-12 73.6 86 45.3
FvH4_5g26200 Fragaria vesca HOM05D006709 ORTHO05D008329 1.2e-11 73.2 82 50.0
FAN08G1650 Fragaria x ananassa HOM05D006709 ORTHO05D008329 1.2e-11 73.2 82 50.0
FAN13G1766 Fragaria x ananassa HOM05D006709 ORTHO05D008329 1.2e-11 73.2 82 50.0
Lalb_Chr04g0257801 Lupinus albus HOM05D006709 ORTHO05D008329 1.2e-11 73.2 86 45.3
Sp4g15940 Schrenkiella parvula HOM05D006709 ORTHO05D008329 1.5e-11 72.8 67 53.7
Hma1.2p1_0489F.1_g164140 Hydrangea macrophylla HOM05D006709 ORTHO05D008329 3.4e-11 71.6 87 42.5
unitig_37.g13048 Utricularia gibba HOM05D006709 ORTHO05D008329 5.9e-11 70.9 85 42.4
FAN18G1826 Fragaria x ananassa HOM05D006709 ORTHO05D008329 1.0e-10 70.1 82 48.8
Rhsim06G0002600 Rhododendron simsii HOM05D006709 ORTHO05D008329 1.0e-10 70.1 96 42.7
MSTRG.1007 Avicennia marina HOM05D006709 ORTHO05D008329 1.7e-10 69.3 71 47.9
Aqoxy5G00959 Aquilegia oxysepala HOM05D006709 ORTHO05D008329 3.8e-10 68.2 67 53.7
Glyma.06G014200 Glycine max HOM05D006709 ORTHO05D008329 6.5e-10 67.4 82 46.3
CsaV3_4G008460 Cucumis sativus L. HOM05D006709 ORTHO05D008329 8.5e-10 67.0 56 58.9
FAN04G1417 Fragaria x ananassa HOM05D006709 ORTHO05D008329 2.7e-08 62.0 83 48.2
Manes.05G128900 Manihot esculenta HOM05D006709 ORTHO05D008329 4.7e-08 61.2 63 49.2
SalBow1G7713 Salvia bowleyana HOM05D006709 ORTHO05D008329 5.7e-06 54.3 46 52.2


User provided reference genes

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