Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c1_9290 Physcomitrium patens HOM05D003903 ORTHO05D004828 0.0e+00 1105.5 550 100.0
Pp3c7_23390 Physcomitrium patens HOM05D003903 ORTHO05D004828 3.3e-258 894.8 560 81.6
Pp3c2_27180 Physcomitrium patens HOM05D003903 ORTHO05D004828 1.2e-255 886.3 552 81.3
Pp3c11_5520 Physcomitrium patens HOM05D003903 ORTHO05D004828 4.6e-252 874.4 555 80.9
Pp3c10_11250 Physcomitrium patens HOM05D003903 ORTHO05D004828 1.3e-182 643.7 485 65.2
Pp3c1_34950 Physcomitrium patens HOM05D003903 ORTHO05D004828 2.7e-143 513.1 382 65.7
SEGI_25890 Sequoiadendron giganteum HOM05D003903 ORTHO05D004828 1.3e-137 494.2 449 55.2
SEGI_13375 Sequoiadendron giganteum HOM05D003903 ORTHO05D004828 2.4e-131 473.4 443 54.2
CDE07G0538 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 2.2e-105 387.1 432 46.8
Nn2g11424 Nelumbo nucifera HOM05D003903 ORTHO05D004828 2.2e-105 387.1 437 47.1
ATR0618G085 Amborella trichopoda HOM05D003903 ORTHO05D004828 1.4e-104 384.4 438 48.2
TAR633G2671 Trochodendron aralioides HOM05D003903 ORTHO05D004828 4.7e-103 379.4 443 45.6
Hma1.2p1_1409F.1_g281590 Hydrangea macrophylla HOM05D003903 ORTHO05D004828 1.8e-102 377.5 433 45.5
HanXRQChr07g0202521 Helianthus annuus HOM05D003903 ORTHO05D004828 6.7e-102 375.6 434 46.5
CANSAT56G3936 Cannabis sativa HOM05D003903 ORTHO05D004828 1.5e-101 374.4 483 43.5
MBI05_g14236_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 3.3e-101 373.2 446 46.6
Aqoxy4G02628 Aquilegia oxysepala HOM05D003903 ORTHO05D004828 7.4e-101 372.1 470 42.6
Lj8C71T1 Lonicera japonica HOM05D003903 ORTHO05D004828 9.7e-101 371.7 432 44.7
CDE03G0196 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 1.3e-100 371.3 435 43.0
COL.COLO4_25636 Corchorus olitorius HOM05D003903 ORTHO05D004828 2.2e-100 370.5 438 44.3
CDE04G0060 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 2.8e-100 370.2 434 43.5
PSO339G1420 Papaver somniferum HOM05D003903 ORTHO05D004828 2.8e-100 370.2 444 43.5
CDE04G2684 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 8.2e-100 368.6 419 45.8
MBI14_g09425_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 8.2e-100 368.6 442 45.0
Potri.008G066000 Populus trichocarpa HOM05D003903 ORTHO05D004828 1.4e-99 367.9 453 43.3
Gohir.D13G017300 Gossypium hirsutum HOM05D003903 ORTHO05D004828 1.8e-99 367.5 433 44.8
Gorai.013G019200 Gossypium raimondii HOM05D003903 ORTHO05D004828 1.8e-99 367.5 433 44.6
Gorai.011G283600 Gossypium raimondii HOM05D003903 ORTHO05D004828 4.1e-99 366.3 434 45.2
Gohir.A13G016200 Gossypium hirsutum HOM05D003903 ORTHO05D004828 5.3e-99 365.9 433 44.6
Lsat_1_v5_gn_2_121400 Lactuca sativa HOM05D003903 ORTHO05D004828 5.3e-99 365.9 458 44.3
Nitab4.5_0001346g0020 Nicotiana tabacum HOM05D003903 ORTHO05D004828 5.3e-99 365.9 442 45.0
Sed0011279 Sechium edule HOM05D003903 ORTHO05D004828 5.3e-99 365.9 454 43.4
Cc02_g06790 Coffea canephora HOM05D003903 ORTHO05D004828 7.0e-99 365.5 444 44.8
Haze_17196 Corylus avellana HOM05D003903 ORTHO05D004828 9.1e-99 365.2 432 45.8
FAN03G2393 Fragaria x ananassa HOM05D003903 ORTHO05D004828 9.1e-99 365.2 438 46.3
Sabra08G0048400 Salix brachista HOM05D003903 ORTHO05D004828 9.1e-99 365.2 450 42.7
FAN06G4939 Fragaria x ananassa HOM05D003903 ORTHO05D004828 1.2e-98 364.8 438 45.9
Gohir.D10G245900 Gossypium hirsutum HOM05D003903 ORTHO05D004828 1.2e-98 364.8 434 45.2
Duzib114G0607 Durio zibethinus HOM05D003903 ORTHO05D004828 1.6e-98 364.4 448 44.0
Gohir.A10G233600 Gossypium hirsutum HOM05D003903 ORTHO05D004828 1.6e-98 364.4 457 43.8
FAN01G2475 Fragaria x ananassa HOM05D003903 ORTHO05D004828 3.5e-98 363.2 469 44.1
Lj1P952T30 Lonicera japonica HOM05D003903 ORTHO05D004828 3.5e-98 363.2 439 44.0
DCAR_011797 Daucus carota HOM05D003903 ORTHO05D004828 5.9e-98 362.5 432 44.0
Cfa001353 Carpinus fangiana HOM05D003903 ORTHO05D004828 7.7e-98 362.1 432 45.4
ECA238G2090 Erigeron canadensis HOM05D003903 ORTHO05D004828 1.0e-97 361.7 451 43.2
Nitab4.5_0000802g0150 Nicotiana tabacum HOM05D003903 ORTHO05D004828 1.0e-97 361.7 442 44.8
Potri.010G191300 Populus trichocarpa HOM05D003903 ORTHO05D004828 1.3e-97 361.3 441 44.2
FvH4_7g24150 Fragaria vesca HOM05D003903 ORTHO05D004828 1.7e-97 360.9 439 45.6
TWI73G0235 Tripterygium wilfordii HOM05D003903 ORTHO05D004828 2.2e-97 360.5 457 41.8
Manes.10G016200 Manihot esculenta HOM05D003903 ORTHO05D004828 2.9e-97 360.1 454 43.0
Actinidia29686 Actinidia chinensis HOM05D003903 ORTHO05D004828 3.8e-97 359.8 442 44.1
Gorai.009G322100 Gossypium raimondii HOM05D003903 ORTHO05D004828 3.8e-97 359.8 451 42.6
Os01g0855600 Oryza sativa ssp. japonica HOM05D003903 ORTHO05D004828 3.8e-97 359.8 436 46.8
GSVIVG01032858001 Vitis vinifera HOM05D003903 ORTHO05D004828 3.8e-97 359.8 434 44.2
Gohir.A05G303900 Gossypium hirsutum HOM05D003903 ORTHO05D004828 5.0e-97 359.4 462 42.4
Sabra10G0147300 Salix brachista HOM05D003903 ORTHO05D004828 5.0e-97 359.4 444 43.7
FAN10G1202 Fragaria x ananassa HOM05D003903 ORTHO05D004828 6.5e-97 359.0 446 45.7
Cpa.g.sc19.206 Carica papaya HOM05D003903 ORTHO05D004828 8.5e-97 358.6 470 41.9
Gohir.D05G302900 Gossypium hirsutum HOM05D003903 ORTHO05D004828 8.5e-97 358.6 451 42.4
ClCG11G006280 Citrullus lanatus HOM05D003903 ORTHO05D004828 2.5e-96 357.1 437 43.0
CsaV3_6G001690 Cucumis sativus L. HOM05D003903 ORTHO05D004828 2.5e-96 357.1 437 43.0
CiPaw.02G190900 Carya illinoinensis HOM05D003903 ORTHO05D004828 3.2e-96 356.7 436 44.0
Thecc.10G023200 Theobroma cacao HOM05D003903 ORTHO05D004828 3.2e-96 356.7 433 43.9
MD07G1215700 Malus domestica HOM05D003903 ORTHO05D004828 4.2e-96 356.3 476 41.6
TWI53G1511 Tripterygium wilfordii HOM05D003903 ORTHO05D004828 4.2e-96 356.3 480 39.6
Duzib128G1594 Durio zibethinus HOM05D003903 ORTHO05D004828 5.5e-96 355.9 434 43.8
RcHm_v2.0_Chr1g0369681 Rosa chinensis HOM05D003903 ORTHO05D004828 5.5e-96 355.9 455 43.1
MD01G1148800 Malus domestica HOM05D003903 ORTHO05D004828 7.2e-96 355.5 465 42.8
Peaxi162Scf01313g00013 Petunia axillaris HOM05D003903 ORTHO05D004828 1.2e-95 354.8 458 43.2
Zm00001eb367110 Zea mays HOM05D003903 ORTHO05D004828 2.1e-95 354.0 447 45.2
AUR62022857 Chenopodium quinoa HOM05D003903 ORTHO05D004828 3.6e-95 353.2 448 43.3
Ciclev10031447m.g Citrus clementina HOM05D003903 ORTHO05D004828 4.7e-95 352.8 438 42.5
Manes.07G126900 Manihot esculenta HOM05D003903 ORTHO05D004828 6.1e-95 352.4 452 41.2
Sc10g0002230 Simmondsia chinensis HOM05D003903 ORTHO05D004828 6.1e-95 352.4 453 41.7
Ah.10g036480 Amaranthus hybridus HOM05D003903 ORTHO05D004828 1.0e-94 351.7 438 44.1
AUR62012225 Chenopodium quinoa HOM05D003903 ORTHO05D004828 1.0e-94 351.7 450 43.1
CiPaw.01G296700 Carya illinoinensis HOM05D003903 ORTHO05D004828 1.4e-94 351.3 435 42.1
MELO3C008286.2 Cucumis melo HOM05D003903 ORTHO05D004828 1.4e-94 351.3 427 43.1
Prupe.2G247600 Prunus persica HOM05D003903 ORTHO05D004828 1.8e-94 350.9 439 42.8
Zm00001eb147510 Zea mays HOM05D003903 ORTHO05D004828 2.3e-94 350.5 434 45.6
Ah.16g103300 Amaranthus hybridus HOM05D003903 ORTHO05D004828 5.2e-94 349.4 438 43.8
Sed0004569 Sechium edule HOM05D003903 ORTHO05D004828 2.6e-93 347.1 442 42.5
Eucgr.J00236 Eucalyptus grandis HOM05D003903 ORTHO05D004828 1.3e-92 344.7 434 43.3
EL10Ac2g04804 Beta vulgaris HOM05D003903 ORTHO05D004828 2.8e-92 343.6 443 41.8
Rhsim03G0141400 Rhododendron simsii HOM05D003903 ORTHO05D004828 2.8e-92 343.6 436 43.1
Atru.chr12.4 Acer truncatum HOM05D003903 ORTHO05D004828 3.7e-92 343.2 436 42.2
MSTRG.27342 Avicennia marina HOM05D003903 ORTHO05D004828 1.8e-91 340.9 435 42.8
Psat5g126680 Pisum sativum HOM05D003903 ORTHO05D004828 1.8e-91 340.9 434 41.0
MSTRG.8967 Avicennia marina HOM05D003903 ORTHO05D004828 2.4e-91 340.5 457 41.1
SGA_v2.0_scaffold60G21023 Striga asiatica HOM05D003903 ORTHO05D004828 9.1e-91 338.6 446 41.0
Migut.F00698 Erythranthe guttata HOM05D003903 ORTHO05D004828 1.2e-90 338.2 454 42.1
BcaC01g05448 Brassica carinata HOM05D003903 ORTHO05D004828 1.6e-90 337.8 430 42.8
C03p26580 Brassica napus HOM05D003903 ORTHO05D004828 1.3e-89 334.7 430 42.3
BraA03t11470Z Brassica rapa HOM05D003903 ORTHO05D004828 1.3e-89 334.7 430 42.1
A03p22420 Brassica napus HOM05D003903 ORTHO05D004828 2.2e-89 334.0 430 41.9
PGR044G2033 Punica granatum HOM05D003903 ORTHO05D004828 2.2e-89 334.0 434 42.6
BolC3t15044H Brassica oleracea HOM05D003903 ORTHO05D004828 3.8e-89 333.2 430 42.3
PGR142G4408 Punica granatum HOM05D003903 ORTHO05D004828 5.0e-89 332.8 448 41.3
Glyma.11G228100 Glycine max HOM05D003903 ORTHO05D004828 1.1e-88 331.6 444 41.7
Ca_17155_v3 Cicer arietinum L. HOM05D003903 ORTHO05D004828 1.5e-88 331.3 434 40.1
Glyma.18G029300 Glycine max HOM05D003903 ORTHO05D004828 2.5e-88 330.5 441 41.0
Medtr3g070230 Medicago truncatula HOM05D003903 ORTHO05D004828 2.5e-88 330.5 434 40.3
AL4G37600 Arabidopsis lyrata HOM05D003903 ORTHO05D004828 3.2e-88 330.1 431 41.1
Lj6g0001525 Lotus japonicus HOM05D003903 ORTHO05D004828 4.2e-88 329.7 445 39.8
Sp4g22310 Schrenkiella parvula HOM05D003903 ORTHO05D004828 1.6e-87 327.8 431 41.8
AT2G40000 Arabidopsis thaliana HOM05D003903 ORTHO05D004828 2.7e-87 327.0 431 41.3
Thhalv10017972m.g Eutrema salsugineum HOM05D003903 ORTHO05D004828 2.7e-87 327.0 448 41.3
arahy.Tifrunner.gnm1.ann1.66PPWS Arachis hypogaea HOM05D003903 ORTHO05D004828 8.0e-87 325.5 428 41.4
Carub.0004s2214 Capsella rubella HOM05D003903 ORTHO05D004828 1.0e-86 325.1 431 40.8
HPP92_019430 Vanilla planifolia HOM05D003903 ORTHO05D004828 1.8e-86 324.3 436 42.2
Aa31LG5G19600 Aethionema arabicum HOM05D003903 ORTHO05D004828 3.0e-86 323.6 431 42.2
BcaB01g03584 Brassica carinata HOM05D003903 ORTHO05D004828 4.0e-86 323.2 430 40.9
VMungo1383G2047 Vigna mungo HOM05D003903 ORTHO05D004828 6.8e-86 322.4 438 40.0
CARHR134950 Cardamine hirsuta HOM05D003903 ORTHO05D004828 4.4e-85 319.7 431 40.6
Sp5g06640 Schrenkiella parvula HOM05D003903 ORTHO05D004828 5.7e-85 319.3 454 40.3
THA.LOC104824309 Tarenaya hassleriana HOM05D003903 ORTHO05D004828 5.7e-85 319.3 424 40.8
A05p06420 Brassica napus HOM05D003903 ORTHO05D004828 9.8e-85 318.5 431 41.1
BcaB02g09061 Brassica carinata HOM05D003903 ORTHO05D004828 1.3e-84 318.2 448 40.6
BraA05t19610Z Brassica rapa HOM05D003903 ORTHO05D004828 1.3e-84 318.2 431 41.1
CARHR165950 Cardamine hirsuta HOM05D003903 ORTHO05D004828 4.8e-84 316.2 431 41.3
AT3G55840 Arabidopsis thaliana HOM05D003903 ORTHO05D004828 8.3e-84 315.5 444 40.1
C04p07470 Brassica napus HOM05D003903 ORTHO05D004828 8.3e-84 315.5 431 40.6
BolC4t22366H Brassica oleracea HOM05D003903 ORTHO05D004828 8.3e-84 315.5 431 40.6
Carub.0005s2262 Capsella rubella HOM05D003903 ORTHO05D004828 1.4e-83 314.7 446 40.4
Thhalv10010400m.g Eutrema salsugineum HOM05D003903 ORTHO05D004828 1.4e-83 314.7 426 41.8
Glyma.14G061200 Glycine max HOM05D003903 ORTHO05D004828 3.1e-83 313.5 452 38.1
THA.LOC104810079 Tarenaya hassleriana HOM05D003903 ORTHO05D004828 3.1e-83 313.5 450 40.0
Phvul.001G241300 Phaseolus vulgaris HOM05D003903 ORTHO05D004828 5.4e-83 312.8 435 39.5
Lalb_Chr10g0105071 Lupinus albus HOM05D003903 ORTHO05D004828 7.0e-83 312.4 436 40.6
AL5G37130 Arabidopsis lyrata HOM05D003903 ORTHO05D004828 9.1e-83 312.0 448 39.3
A09p48830 Brassica napus HOM05D003903 ORTHO05D004828 9.1e-83 312.0 434 39.9
BolC8t50737H Brassica oleracea HOM05D003903 ORTHO05D004828 9.1e-83 312.0 434 39.9
BraA09t40336Z Brassica rapa HOM05D003903 ORTHO05D004828 9.1e-83 312.0 434 39.9
VMungo0647G1175 Vigna mungo HOM05D003903 ORTHO05D004828 9.1e-83 312.0 426 39.4
C08p31160 Brassica napus HOM05D003903 ORTHO05D004828 1.2e-82 311.6 438 40.2
unitig_37.g12017 Utricularia gibba HOM05D003903 ORTHO05D004828 1.2e-82 311.6 404 42.6
LjContig00357g0017260 Lotus japonicus HOM05D003903 ORTHO05D004828 3.5e-82 310.1 427 38.4
Phvul.008G225500 Phaseolus vulgaris HOM05D003903 ORTHO05D004828 5.9e-82 309.3 452 37.8
Lalb_Chr15g0084211 Lupinus albus HOM05D003903 ORTHO05D004828 7.7e-82 308.9 453 38.6
BraA04t18495Z Brassica rapa HOM05D003903 ORTHO05D004828 1.3e-81 308.1 433 38.8
Lalb_Chr18g0052671 Lupinus albus HOM05D003903 ORTHO05D004828 1.3e-81 308.1 430 38.8
A04p30140 Brassica napus HOM05D003903 ORTHO05D004828 2.9e-81 307.0 433 38.6
C04p67730 Brassica napus HOM05D003903 ORTHO05D004828 6.6e-81 305.8 433 38.3
BolC4t28276H Brassica oleracea HOM05D003903 ORTHO05D004828 8.6e-81 305.4 433 38.6
BcaC02g07344 Brassica carinata HOM05D003903 ORTHO05D004828 2.5e-80 303.9 427 38.9
BcaC02g07389 Brassica carinata HOM05D003903 ORTHO05D004828 2.5e-80 303.9 427 38.9
Ca_05946_v3 Cicer arietinum L. HOM05D003903 ORTHO05D004828 2.1e-79 300.8 468 35.7
Glyma.02G255400 Glycine max HOM05D003903 ORTHO05D004828 1.8e-78 297.7 452 36.5
BcaC02g07343 Brassica carinata HOM05D003903 ORTHO05D004828 3.0e-78 297.0 470 36.4
Dinv20976 Davidia involucrata HOM05D003903 ORTHO05D004828 1.3e-76 291.6 369 44.7
Dinv21029 Davidia involucrata HOM05D003903 ORTHO05D004828 1.3e-76 291.6 369 44.7
Psat2g033760 Pisum sativum HOM05D003903 ORTHO05D004828 8.3e-76 288.9 436 36.7
Medtr5g082150 Medicago truncatula HOM05D003903 ORTHO05D004828 4.1e-75 286.6 426 36.2
BcaB01g00057 Brassica carinata HOM05D003903 ORTHO05D004828 4.4e-53 213.4 434 32.9
BcaB06g29121 Brassica carinata HOM05D003903 ORTHO05D004828 9.9e-53 212.2 312 40.7
Eucgr.G03040 Eucalyptus grandis HOM05D003903 ORTHO05D004828 4.6e-50 203.4 280 38.9
MBI09_g39159_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 1.2e-42 178.7 235 41.3
BolC4t22365H Brassica oleracea HOM05D003903 ORTHO05D004828 2.6e-37 161.0 223 43.5
C04p07450 Brassica napus HOM05D003903 ORTHO05D004828 5.8e-37 159.8 223 43.0
MBI15_g28805_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 2.1e-34 151.4 188 42.0
Dinv34412 Davidia involucrata HOM05D003903 ORTHO05D004828 6.6e-33 146.4 159 46.5
BcaNung05460 Brassica carinata HOM05D003903 ORTHO05D004828 1.6e-31 141.7 180 46.1
TPR.G2520 Trifolium pratense HOM05D003903 ORTHO05D004828 4.2e-27 127.1 173 43.4
Nn5g26808 Nelumbo nucifera HOM05D003903 ORTHO05D004828 2.3e-17 94.7 335 25.7
BcaC09g52232 Brassica carinata HOM05D003903 ORTHO05D031840 5.0e-12 77.0 72 52.8
C08p31450 Brassica napus HOM05D003903 ORTHO05D031840 1.2e-10 72.4 72 50.0
arahy.Tifrunner.gnm1.ann1.I5QRDP Arachis hypogaea HOM05D003903 ORTHO05D004828 2.3e-09 68.2 142 30.3
BolC7t41876H Brassica oleracea HOM05D003903 ORTHO05D031840 5.1e-09 67.0 74 48.6
ATR0693G017 Amborella trichopoda HOM05D003903 ORTHO05D004828 3.3e-08 64.3 51 54.9
BcaNung05461 Brassica carinata HOM05D003903 ORTHO05D004828 7.4e-08 63.2 80 36.2


User provided reference genes

Program Settings