Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c1_8510 Physcomitrium patens HOM05D001177 ORTHO05D001507 1.1e-25 119.0 54 100.0
Pp3c4_1220 Physcomitrium patens HOM05D001177 ORTHO05D001507 2.3e-15 84.7 53 73.6
Pp3c4_27110 Physcomitrium patens HOM05D001177 ORTHO05D001507 3.5e-11 70.9 53 58.5
Pp3c10_15120 Physcomitrium patens HOM05D001177 ORTHO05D001507 7.8e-11 69.7 53 58.5
Pp3c3_25310 Physcomitrium patens HOM05D001177 ORTHO05D001507 1.0e-10 69.3 53 58.5
ATR0824G069 Amborella trichopoda HOM05D001177 ORTHO05D001507 7.3e-09 63.2 53 49.1
Mapoly0077s0009 Marchantia polymorpha HOM05D001177 ORTHO05D001507 7.3e-09 63.2 54 48.1
Lalb_Chr24g0403421 Lupinus albus HOM05D001177 ORTHO05D001507 2.8e-08 61.2 55 49.1
SMO141G0125 Selaginella moellendorffii HOM05D001177 ORTHO05D001507 3.6e-08 60.8 53 43.4
SEGI_00116 Sequoiadendron giganteum HOM05D001177 ORTHO05D001507 3.6e-08 60.8 54 50.0
Mapoly0007s0020 Marchantia polymorpha HOM05D001177 ORTHO05D001507 4.7e-08 60.5 54 48.1
Manes.17G107700 Manihot esculenta HOM05D001177 ORTHO05D001507 6.1e-08 60.1 55 47.3
SEGI_18332 Sequoiadendron giganteum HOM05D001177 ORTHO05D001507 6.1e-08 60.1 53 45.3
TAR381G0649 Trochodendron aralioides HOM05D001177 ORTHO05D001507 6.1e-08 60.1 54 50.0
Mapoly0001s0534 Marchantia polymorpha HOM05D001177 ORTHO05D001507 8.0e-08 59.7 53 41.5
AagrBONN_evm.TU.Sc2ySwM_228.5695 Anthoceros agrestis HOM05D001177 ORTHO05D001507 1.0e-07 59.3 53 45.3
Aqoxy3G00857 Aquilegia oxysepala HOM05D001177 ORTHO05D001507 1.0e-07 59.3 55 45.5
SEGI_40457 Sequoiadendron giganteum HOM05D001177 ORTHO05D001507 1.0e-07 59.3 53 41.5
Glyma.08G293200 Glycine max HOM05D001177 ORTHO05D001507 1.4e-07 58.9 55 45.5
Ca_05076_v3 Cicer arietinum L. HOM05D001177 ORTHO05D001507 1.8e-07 58.5 55 45.5
Manes.15G156000 Manihot esculenta HOM05D001177 ORTHO05D001507 1.8e-07 58.5 55 45.5
CiPaw.05G144100 Carya illinoinensis HOM05D001177 ORTHO05D001507 2.3e-07 58.2 55 45.5
Medtr5g037020 Medicago truncatula HOM05D001177 ORTHO05D001507 3.1e-07 57.8 55 45.5
MSTRG.7849 Avicennia marina HOM05D001177 ORTHO05D001507 4.0e-07 57.4 55 43.6
Glyma.02G026500 Glycine max HOM05D001177 ORTHO05D001507 4.0e-07 57.4 55 43.6
Phvul.002G078300 Phaseolus vulgaris HOM05D001177 ORTHO05D001507 4.0e-07 57.4 55 43.6
SGA_v2.0_scaffold87G26990 Striga asiatica HOM05D001177 ORTHO05D001507 4.0e-07 57.4 55 43.6
ECA246G4581 Erigeron canadensis HOM05D001177 ORTHO05D001507 5.2e-07 57.0 55 45.5
HanXRQChr07g0203371 Helianthus annuus HOM05D001177 ORTHO05D001507 5.2e-07 57.0 55 45.5
QL03p067497 Quercus lobata HOM05D001177 ORTHO05D001507 5.2e-07 57.0 53 43.4
SGA_v2.0_scaffold166G38307 Striga asiatica HOM05D001177 ORTHO05D001507 5.2e-07 57.0 55 45.5
Thecc.04G025100 Theobroma cacao HOM05D001177 ORTHO05D001507 5.2e-07 57.0 55 45.5
TPR.G26705 Trifolium pratense HOM05D001177 ORTHO05D001507 5.2e-07 57.0 55 43.6
VMungo1215G1136 Vigna mungo HOM05D001177 ORTHO05D001507 5.2e-07 57.0 55 43.6
Glyma.18G130100 Glycine max HOM05D001177 ORTHO05D001507 6.8e-07 56.6 55 43.6
Lj2g0005552 Lotus japonicus HOM05D001177 ORTHO05D001507 6.8e-07 56.6 55 43.6
Nn6g31712 Nelumbo nucifera HOM05D001177 ORTHO05D001507 6.8e-07 56.6 55 47.3
arahy.Tifrunner.gnm1.ann1.1S388T Arachis hypogaea HOM05D001177 ORTHO05D001507 8.9e-07 56.2 55 45.5
arahy.Tifrunner.gnm1.ann1.W74W8S Arachis hypogaea HOM05D001177 ORTHO05D001507 8.9e-07 56.2 55 45.5
CANSAT64G1555 Cannabis sativa HOM05D001177 ORTHO05D001507 8.9e-07 56.2 55 43.6
CANSAT64G1637 Cannabis sativa HOM05D001177 ORTHO05D001507 8.9e-07 56.2 55 43.6
Migut.L01373 Erythranthe guttata HOM05D001177 ORTHO05D001507 8.9e-07 56.2 55 45.5
Glyma.19G081400 Glycine max HOM05D001177 ORTHO05D001507 8.9e-07 56.2 55 45.5
HanXRQChr15g0478261 Helianthus annuus HOM05D001177 ORTHO05D001507 8.9e-07 56.2 55 45.5
PSO541G2533 Papaver somniferum HOM05D001177 ORTHO05D001507 8.9e-07 56.2 55 50.9
PSO675G0647 Papaver somniferum HOM05D001177 ORTHO05D001507 8.9e-07 56.2 55 50.9
Solyc02g093750.3 Solanum lycopersicum HOM05D001177 ORTHO05D001507 8.9e-07 56.2 53 43.4
GSVIVG01003965001 Vitis vinifera HOM05D001177 ORTHO05D001507 8.9e-07 56.2 55 43.6
Ciclev10017544m.g Citrus clementina HOM05D001177 ORTHO05D001507 1.2e-06 55.8 55 45.5
Cc11_g13950 Coffea canephora HOM05D001177 ORTHO05D001507 1.2e-06 55.8 55 43.6
CsaV3_5G032020 Cucumis sativus L. HOM05D001177 ORTHO05D001507 1.2e-06 55.8 55 41.8
Dinv25699 Davidia involucrata HOM05D001177 ORTHO05D001507 1.2e-06 55.8 55 43.6
Gohir.A09G032600 Gossypium hirsutum HOM05D001177 ORTHO05D001507 1.2e-06 55.8 55 45.5
Gohir.D09G032600 Gossypium hirsutum HOM05D001177 ORTHO05D001507 1.2e-06 55.8 55 45.5
Gorai.006G037600 Gossypium raimondii HOM05D001177 ORTHO05D001507 1.2e-06 55.8 55 45.5
Nn5g30978 Nelumbo nucifera HOM05D001177 ORTHO05D001507 1.2e-06 55.8 55 47.3
Psat2g114760 Pisum sativum HOM05D001177 ORTHO05D001507 1.2e-06 55.8 55 41.8
Aqoxy3G03166 Aquilegia oxysepala HOM05D001177 ORTHO05D001507 1.5e-06 55.5 55 43.6
CDE05G2199 Ceratophyllum demersum HOM05D001177 ORTHO05D001507 1.5e-06 55.5 54 44.4
Ciclev10030976m.g Citrus clementina HOM05D001177 ORTHO05D001507 1.5e-06 55.5 55 43.6
Glyma.01G038500 Glycine max HOM05D001177 ORTHO05D001507 1.5e-06 55.5 55 41.8
A08p27820 Brassica napus HOM05D001177 ORTHO05D001507 2.0e-06 55.1 55 45.5
BraA08t34714Z Brassica rapa HOM05D001177 ORTHO05D001507 2.0e-06 55.1 55 45.5
CAN.G1694.2 Capsicum annuum HOM05D001177 ORTHO05D001507 2.0e-06 55.1 55 43.6
ClCG05G024890 Citrullus lanatus HOM05D001177 ORTHO05D001507 2.0e-06 55.1 55 43.6
COL.COLO4_29270 Corchorus olitorius HOM05D001177 ORTHO05D001507 2.0e-06 55.1 55 45.5
MELO3C012037.2 Cucumis melo HOM05D001177 ORTHO05D001507 2.0e-06 55.1 55 43.6
Duzib264G0509 Durio zibethinus HOM05D001177 ORTHO05D001507 2.0e-06 55.1 55 41.8
Migut.E00129 Erythranthe guttata HOM05D001177 ORTHO05D001507 2.0e-06 55.1 55 43.6
Lsat_1_v5_gn_8_161801 Lactuca sativa HOM05D001177 ORTHO05D001507 2.0e-06 55.1 55 41.8
PSO832G0304 Papaver somniferum HOM05D001177 ORTHO05D001507 2.0e-06 55.1 55 43.6
PGR102G2564 Punica granatum HOM05D001177 ORTHO05D001507 2.0e-06 55.1 55 43.6
Solyc05g006560.1 Solanum lycopersicum HOM05D001177 ORTHO05D001507 2.0e-06 55.1 55 43.6
Sopen02g038390 Solanum pennellii HOM05D001177 ORTHO05D001507 2.0e-06 55.1 53 41.5
Sopen05g002510 Solanum pennellii HOM05D001177 ORTHO05D001507 2.0e-06 55.1 55 43.6
PGSC0003DMG400022633 Solanum tuberosum HOM05D001177 ORTHO05D001507 2.0e-06 55.1 55 43.6
VMungo0720G0730 Vigna mungo HOM05D001177 ORTHO05D001507 2.0e-06 55.1 55 45.5
EL10Ac6g13090 Beta vulgaris HOM05D001177 ORTHO05D001507 2.6e-06 54.7 55 45.5
BcaC07g39241 Brassica carinata HOM05D001177 ORTHO05D001507 2.6e-06 54.7 55 43.6
Ca_06622_v3 Cicer arietinum L. HOM05D001177 ORTHO05D001507 2.6e-06 54.7 55 43.6
Lalb_Chr09g0326591 Lupinus albus HOM05D001177 ORTHO05D001507 2.6e-06 54.7 55 41.8
Oeu015871.1 Olea europaea HOM05D001177 ORTHO05D001507 2.6e-06 54.7 55 41.8
PSO591G0450 Papaver somniferum HOM05D001177 ORTHO05D001507 2.6e-06 54.7 55 41.8
Phvul.008G147000 Phaseolus vulgaris HOM05D001177 ORTHO05D001507 2.6e-06 54.7 55 45.5
SEGI_13207 Sequoiadendron giganteum HOM05D001177 ORTHO05D001507 2.6e-06 54.7 54 46.3
SEGI_37371 Sequoiadendron giganteum HOM05D001177 ORTHO05D001507 2.6e-06 54.7 54 48.1
VMungo0251G2894 Vigna mungo HOM05D001177 ORTHO05D001507 2.6e-06 54.7 55 40.0
Aa31LG2G5370 Aethionema arabicum HOM05D001177 ORTHO05D001507 3.4e-06 54.3 55 41.8
Nn3g17055 Nelumbo nucifera HOM05D001177 ORTHO05D001507 3.4e-06 54.3 55 43.6
Oeu044539.2 Olea europaea HOM05D001177 ORTHO05D001507 3.4e-06 54.3 55 41.8
Prupe.3G299100 Prunus persica HOM05D001177 ORTHO05D001507 3.4e-06 54.3 55 43.6
Rhsim10G0011800 Rhododendron simsii HOM05D001177 ORTHO05D001507 3.4e-06 54.3 55 41.8
Sed0017932 Sechium edule HOM05D001177 ORTHO05D001507 3.4e-06 54.3 55 43.6
TAR371G0949 Trochodendron aralioides HOM05D001177 ORTHO05D001507 3.4e-06 54.3 55 43.6
Duzib248G0839 Durio zibethinus HOM05D001177 ORTHO05D001507 4.4e-06 53.9 55 41.8
FvH4_4g35330 Fragaria vesca HOM05D001177 ORTHO05D001507 4.4e-06 53.9 55 41.8
FAN12G0036 Fragaria x ananassa HOM05D001177 ORTHO05D001507 4.4e-06 53.9 55 41.8
FAN17G0702 Fragaria x ananassa HOM05D001177 ORTHO05D001507 4.4e-06 53.9 55 41.8
FAN22G1475 Fragaria x ananassa HOM05D001177 ORTHO05D001507 4.4e-06 53.9 55 41.8
Hma1.2p1_0279F.1_g112200 Hydrangea macrophylla HOM05D001177 ORTHO05D001507 4.4e-06 53.9 55 43.6
Hma1.2p1_0289F.1_g114520 Hydrangea macrophylla HOM05D001177 ORTHO05D001507 4.4e-06 53.9 55 41.8
MD16G1083500 Malus domestica HOM05D001177 ORTHO05D001507 4.4e-06 53.9 55 40.0
Rhsim12G0052400 Rhododendron simsii HOM05D001177 ORTHO05D001507 4.4e-06 53.9 55 43.6
TWI75G1660 Tripterygium wilfordii HOM05D001177 ORTHO05D001507 4.4e-06 53.9 55 40.0
TAR376G0130 Trochodendron aralioides HOM05D001177 ORTHO05D001507 4.4e-06 53.9 54 48.1
Aqoxy6G01632 Aquilegia oxysepala HOM05D001177 ORTHO05D001507 5.8e-06 53.5 55 45.5
MSTRG.13392 Avicennia marina HOM05D001177 ORTHO05D001507 5.8e-06 53.5 55 41.8
CSS0013074 Camellia sinensis var. sinensis HOM05D001177 ORTHO05D001507 5.8e-06 53.5 55 41.8
CSS0018087 Camellia sinensis var. sinensis HOM05D001177 ORTHO05D001507 5.8e-06 53.5 55 41.8
Cpa.g.sc5.316 Carica papaya HOM05D001177 ORTHO05D001507 5.8e-06 53.5 55 40.0
Eucgr.I01697 Eucalyptus grandis HOM05D001177 ORTHO05D001507 5.8e-06 53.5 55 41.8
Lalb_Chr16g0382611 Lupinus albus HOM05D001177 ORTHO05D001507 5.8e-06 53.5 55 40.0
Sed0000420 Sechium edule HOM05D001177 ORTHO05D001507 5.8e-06 53.5 55 41.8
TWI36G1408 Tripterygium wilfordii HOM05D001177 ORTHO05D001507 5.8e-06 53.5 55 38.2
ATR0712G160 Amborella trichopoda HOM05D001177 ORTHO05D001507 7.5e-06 53.1 54 40.7
MSTRG.24062 Avicennia marina HOM05D001177 ORTHO05D001507 7.5e-06 53.1 55 40.0
Duzib268G1843 Durio zibethinus HOM05D001177 ORTHO05D001507 7.5e-06 53.1 55 41.8
Gohir.A05G319900 Gossypium hirsutum HOM05D001177 ORTHO05D001507 7.5e-06 53.1 55 41.8
Gohir.D05G322200 Gossypium hirsutum HOM05D001177 ORTHO05D001507 7.5e-06 53.1 55 41.8
Gorai.009G345800 Gossypium raimondii HOM05D001177 ORTHO05D001507 7.5e-06 53.1 55 41.8
MD09G1017900 Malus domestica HOM05D001177 ORTHO05D001507 7.5e-06 53.1 55 43.6
Nitab4.5_0001030g0100 Nicotiana tabacum HOM05D001177 ORTHO05D001507 7.5e-06 53.1 55 41.8
Nitab4.5_0011499g0010 Nicotiana tabacum HOM05D001177 ORTHO05D001507 7.5e-06 53.1 55 41.8
Potri.001G336766 Populus trichocarpa HOM05D001177 ORTHO05D001507 7.5e-06 53.1 55 41.8
Potri.008G192000 Populus trichocarpa HOM05D001177 ORTHO05D001507 7.5e-06 53.1 55 43.6
QL02p073163 Quercus lobata HOM05D001177 ORTHO05D001507 7.5e-06 53.1 55 41.8
Sabra08G0145500 Salix brachista HOM05D001177 ORTHO05D001507 7.5e-06 53.1 55 43.6
Sc14g0008510 Simmondsia chinensis HOM05D001177 ORTHO05D001507 7.5e-06 53.1 55 41.8
Thecc.02G238200 Theobroma cacao HOM05D001177 ORTHO05D001507 7.5e-06 53.1 55 41.8
TAR622G0035 Trochodendron aralioides HOM05D001177 ORTHO05D001507 7.5e-06 53.1 55 43.6
Atru.chr6.2478 Acer truncatum HOM05D001177 ORTHO05D001507 9.8e-06 52.8 56 39.3
C08p22460 Brassica napus HOM05D001177 ORTHO05D001507 9.8e-06 52.8 55 41.8
COL.COLO4_36267 Corchorus olitorius HOM05D001177 ORTHO05D001507 9.8e-06 52.8 55 38.2
Dinv24929 Davidia involucrata HOM05D001177 ORTHO05D001507 9.8e-06 52.8 55 38.2
Lsat_1_v5_gn_2_93580 Lactuca sativa HOM05D001177 ORTHO05D001507 9.8e-06 52.8 55 40.0
Oeu030467.1 Olea europaea HOM05D001177 ORTHO05D001507 9.8e-06 52.8 55 40.0
Oeu034102.1 Olea europaea HOM05D001177 ORTHO05D001507 9.8e-06 52.8 55 43.6
Peaxi162Scf00828g10023 Petunia axillaris HOM05D001177 ORTHO05D001507 9.8e-06 52.8 55 41.8
Rhsim10G0011700 Rhododendron simsii HOM05D001177 ORTHO05D001507 9.8e-06 52.8 55 40.0
RcHm_v2.0_Chr4g0444941 Rosa chinensis HOM05D001177 ORTHO05D001507 9.8e-06 52.8 55 41.8


User provided reference genes

Program Settings