Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c1_8490 Physcomitrium patens HOM05D002809 ORTHO05D317598 1.5e-238 828.9 379 100.0
Pp3c2_38150 Physcomitrium patens HOM05D004302 ORTHO05D310193 1.5e-36 157.9 365 30.1
Mapoly0002s0187 Marchantia polymorpha HOM05D002809 ORTHO05D004563 2.1e-22 110.9 361 27.1
Mapoly0005s0140 Marchantia polymorpha HOM05D002809 ORTHO05D004563 3.5e-17 93.6 360 25.3
SEGI_39892 Sequoiadendron giganteum HOM05D003005 ORTHO05D017280 1.5e-15 88.2 293 25.9
Mapoly0063s0081 Marchantia polymorpha HOM05D002809 ORTHO05D004563 2.5e-15 87.4 301 25.2
Pp3c3_5460 Physcomitrium patens HOM05D002809 ORTHO05D004563 2.5e-15 87.4 290 25.2
Hund25470 Selenicereus undatus HOM05D002809 ORTHO05D004563 3.3e-15 87.0 292 24.7
Pp3c9_6080 Physcomitrium patens HOM05D002809 ORTHO05D004563 2.1e-14 84.3 244 28.3
CiPaw.05G108500 Carya illinoinensis HOM05D002809 ORTHO05D004563 6.2e-14 82.8 294 24.1
Manes.12G010000 Manihot esculenta HOM05D002809 ORTHO05D004563 4.0e-13 80.1 291 23.0
SMO361G0323 Selaginella moellendorffii HOM05D002809 ORTHO05D004939 4.0e-13 80.1 303 25.1
Nitab4.5_0004914g0010 Nicotiana tabacum HOM05D002809 ORTHO05D004563 1.2e-12 78.6 291 25.4
CSS0014036 Camellia sinensis var. sinensis HOM05D002809 ORTHO05D004563 1.5e-12 78.2 287 23.0
Medtr3g085160 Medicago truncatula HOM05D002809 ORTHO05D004563 1.5e-12 78.2 285 23.5
SEGI_36099 Sequoiadendron giganteum HOM05D003005 ORTHO05D030467 1.5e-12 78.2 322 28.0
Pp3c14_15770 Physcomitrium patens HOM05D003005 ORTHO05D004939 2.0e-12 77.8 304 26.0
AUR62005631 Chenopodium quinoa HOM05D002809 ORTHO05D004563 2.6e-12 77.4 295 24.1
DCAR_026456 Daucus carota HOM05D002809 ORTHO05D004563 2.6e-12 77.4 295 24.4
Dinv10947 Davidia involucrata HOM05D002809 ORTHO05D004563 3.4e-12 77.0 285 23.5
CSS0036768 Camellia sinensis var. sinensis HOM05D002809 ORTHO05D004563 4.5e-12 76.6 287 22.6
BolC5t31323H Brassica oleracea HOM05D002809 ORTHO05D004563 5.8e-12 76.3 293 23.9
Carub.0001s2587 Capsella rubella HOM05D002809 ORTHO05D004563 5.8e-12 76.3 294 23.8
QL03p052448 Quercus lobata HOM05D002809 ORTHO05D004563 5.8e-12 76.3 289 23.2
A09p38610 Brassica napus HOM05D002809 ORTHO05D004563 7.6e-12 75.9 294 22.1
SGA_v2.0_scaffold46G17476 Striga asiatica HOM05D002809 ORTHO05D004563 7.6e-12 75.9 293 25.3
BraA09t39366Z Brassica rapa HOM05D002809 ORTHO05D004563 9.9e-12 75.5 294 22.1
Haze_12431 Corylus avellana HOM05D002809 ORTHO05D004563 1.3e-11 75.1 293 25.6
SEGI_08933 Sequoiadendron giganteum HOM05D002809 ORTHO05D004563 1.3e-11 75.1 290 26.2
AagrBONN_evm.TU.Sc2ySwM_228.2355 Anthoceros agrestis HOM05D002809 ORTHO05D007546 1.7e-11 74.7 301 24.3
EL10Ac6g13516 Beta vulgaris HOM05D002809 ORTHO05D004563 1.7e-11 74.7 289 24.2
Ca_16451_v3 Cicer arietinum L. HOM05D002809 ORTHO05D004563 1.7e-11 74.7 286 23.4
TAR629G1933 Trochodendron aralioides HOM05D002809 ORTHO05D004563 1.7e-11 74.7 287 23.7
Manes.13G010700 Manihot esculenta HOM05D002809 ORTHO05D004563 2.2e-11 74.3 289 22.8
Sopen12g034970 Solanum pennellii HOM05D002809 ORTHO05D004563 2.2e-11 74.3 292 24.7
PGSC0003DMG400034305 Solanum tuberosum HOM05D002809 ORTHO05D004563 2.2e-11 74.3 289 23.5
ATR0763G218 Amborella trichopoda HOM05D005977 ORTHO05D007546 2.9e-11 73.9 346 26.9
BcaC05g26549 Brassica carinata HOM05D002809 ORTHO05D004563 2.9e-11 73.9 286 23.1
C05p26040 Brassica napus HOM05D002809 ORTHO05D004563 2.9e-11 73.9 293 23.5
Dinv17569 Davidia involucrata HOM05D002809 ORTHO05D004563 2.9e-11 73.9 287 22.6
Psat5g096960 Pisum sativum HOM05D002809 ORTHO05D004563 2.9e-11 73.9 296 24.0
Potri.001G057100 Populus trichocarpa HOM05D002809 ORTHO05D004563 2.9e-11 73.9 291 23.7
Migut.K00952 Erythranthe guttata HOM05D002809 ORTHO05D004563 3.8e-11 73.6 300 25.0
Lj3P1070T8 Lonicera japonica HOM05D002809 ORTHO05D004563 3.8e-11 73.6 293 24.2
MD13G1120600 Malus domestica HOM05D002809 ORTHO05D004563 3.8e-11 73.6 297 24.2
unitig_699.g19960 Utricularia gibba HOM05D002809 ORTHO05D004563 3.8e-11 73.6 303 24.8
GSVIVG01010498001 Vitis vinifera HOM05D002809 ORTHO05D004563 3.8e-11 73.6 291 22.7
AUR62028917 Chenopodium quinoa HOM05D002809 ORTHO05D004563 4.9e-11 73.2 305 24.6
Peaxi162Scf00128g00136 Petunia axillaris HOM05D002809 ORTHO05D004563 4.9e-11 73.2 289 24.2
Glyma.11G251600 Glycine max HOM05D002809 ORTHO05D004563 6.4e-11 72.8 285 22.8
Lj4g0005095 Lotus japonicus HOM05D002809 ORTHO05D004563 6.4e-11 72.8 287 22.0
Sp1g23570 Schrenkiella parvula HOM05D002809 ORTHO05D004563 6.4e-11 72.8 286 23.1
TPR.G17783 Trifolium pratense HOM05D002809 ORTHO05D004563 6.4e-11 72.8 285 23.5
CSS0001428 Camellia sinensis var. sinensis HOM05D002809 ORTHO05D004563 8.4e-11 72.4 285 23.5
SalBow2G0967 Salvia bowleyana HOM05D002809 ORTHO05D004563 8.4e-11 72.4 295 23.1
Thhalv10007553m.g Eutrema salsugineum HOM05D002809 ORTHO05D004563 1.1e-10 72.0 295 23.1
Sc11g0000420 Simmondsia chinensis HOM05D002809 ORTHO05D004563 1.1e-10 72.0 360 23.3
Thecc.02G206300 Theobroma cacao HOM05D002809 ORTHO05D004563 1.4e-10 71.6 291 23.4
Atru.chr11.2338 Acer truncatum HOM05D002809 ORTHO05D004563 1.9e-10 71.2 285 22.5
Eucgr.H04635 Eucalyptus grandis HOM05D002809 ORTHO05D004563 1.9e-10 71.2 299 21.4
Glyma.18G275900 Glycine max HOM05D004302 ORTHO05D004939 1.9e-10 71.2 291 26.8
CARHR026910 Cardamine hirsuta HOM05D002809 ORTHO05D004563 2.4e-10 70.9 289 22.5
ECA246G0607 Erigeron canadensis HOM05D002809 ORTHO05D004563 2.4e-10 70.9 276 25.0
FvH4_4g23620 Fragaria vesca HOM05D002809 ORTHO05D004563 2.4e-10 70.9 294 23.1
Gohir.A01G154500 Gossypium hirsutum HOM05D002809 ORTHO05D004563 2.4e-10 70.9 287 22.3
Gohir.D01G146700 Gossypium hirsutum HOM05D002809 ORTHO05D004563 2.4e-10 70.9 287 22.6
Gorai.002G182600 Gossypium raimondii HOM05D002809 ORTHO05D004563 2.4e-10 70.9 287 22.6
MapolyY_A0023 Marchantia polymorpha HOM05D002809 ORTHO05D004563 2.4e-10 70.9 354 24.9
RcHm_v2.0_Chr4g0430081 Rosa chinensis HOM05D002809 ORTHO05D004563 2.4e-10 70.9 297 24.2
COL.COLO4_20416 Corchorus olitorius HOM05D002809 ORTHO05D004563 3.2e-10 70.5 287 23.0
FAN12G0247 Fragaria x ananassa HOM05D002809 ORTHO05D004563 3.2e-10 70.5 294 23.1
Solyc05g015520.3 Solanum lycopersicum HOM05D002809 ORTHO05D004563 3.2e-10 70.5 292 24.3
unitig_747.g21123 Utricularia gibba HOM05D002809 ORTHO05D004563 3.2e-10 70.5 309 23.6
MSTRG.8011 Avicennia marina HOM05D002809 ORTHO05D004563 4.2e-10 70.1 291 22.7
ATR0561G142 Amborella trichopoda HOM05D002809 ORTHO05D004563 5.4e-10 69.7 347 23.6
Aqoxy3G00570 Aquilegia oxysepala HOM05D004302 ORTHO05D004939 5.4e-10 69.7 293 26.3
AL1G40740 Arabidopsis lyrata HOM05D002809 ORTHO05D004563 5.4e-10 69.7 294 23.5
AT1G27340 Arabidopsis thaliana HOM05D002809 ORTHO05D004563 5.4e-10 69.7 291 22.7
Duzib251G0128 Durio zibethinus HOM05D002809 ORTHO05D004563 5.4e-10 69.7 287 22.6
FAN17G0774 Fragaria x ananassa HOM05D002809 ORTHO05D004563 7.1e-10 69.3 297 24.2
Hund06095 Selenicereus undatus HOM05D002809 ORTHO05D004563 9.3e-10 68.9 290 23.8
VMungo1383G2061 Vigna mungo HOM05D002809 ORTHO05D004563 9.3e-10 68.9 289 22.8
Gohir.A03G125400 Gossypium hirsutum HOM05D002809 ORTHO05D004563 1.2e-09 68.6 305 23.3
Phvul.001G262700 Phaseolus vulgaris HOM05D002809 ORTHO05D004563 1.2e-09 68.6 285 22.1
Nn3g16449 Nelumbo nucifera HOM05D002809 ORTHO05D004563 1.6e-09 68.2 291 23.0
PGR119G2572 Punica granatum HOM05D002809 ORTHO05D004563 1.6e-09 68.2 297 22.2
VMungo1383G1338 Vigna mungo HOM05D004302 ORTHO05D004939 1.6e-09 68.2 293 26.3
AagrBONN_evm.TU.Sc2ySwM_228.4047 Anthoceros agrestis HOM05D004302 ORTHO05D010190 2.1e-09 67.8 311 24.4
Glyma.08G253600 Glycine max HOM05D004302 ORTHO05D004939 2.1e-09 67.8 291 26.1
Prupe.1G224600 Prunus persica HOM05D002809 ORTHO05D004563 2.7e-09 67.4 294 22.1
SMO351G0091 Selaginella moellendorffii HOM05D005977 ORTHO05D007546 2.7e-09 67.4 296 25.3
Oeu004454.1 Olea europaea HOM05D002809 ORTHO05D004563 4.6e-09 66.6 304 25.0
Oeu035470.1 Olea europaea HOM05D002809 ORTHO05D004563 4.6e-09 66.6 306 23.2
Phvul.008G025000 Phaseolus vulgaris HOM05D004302 ORTHO05D004939 4.6e-09 66.6 293 25.9
Pp3c25_9030 Physcomitrium patens HOM05D002809 ORTHO05D004939 4.6e-09 66.6 280 23.2
Glyma.18G005400 Glycine max HOM05D002809 ORTHO05D004563 6.0e-09 66.2 285 22.1
Mapoly0014s0188 Marchantia polymorpha HOM05D002809 ORTHO05D004563 6.0e-09 66.2 242 27.3
PSO017G7124 Papaver somniferum HOM05D004302 ORTHO05D004939 6.0e-09 66.2 293 26.3
PSO478G2444 Papaver somniferum HOM05D004302 ORTHO05D004939 6.0e-09 66.2 293 26.6
Lalb_Chr23g0278141 Lupinus albus HOM05D002809 ORTHO05D004563 1.0e-08 65.5 282 22.0
ECA246G1512 Erigeron canadensis HOM05D004302 ORTHO05D004939 1.3e-08 65.1 295 26.1
Nn4g22302 Nelumbo nucifera HOM05D002809 ORTHO05D004563 1.3e-08 65.1 298 23.2
Ah.10g038290 Amaranthus hybridus HOM05D004302 ORTHO05D004939 1.8e-08 64.7 291 25.8
FvH4_6g46160 Fragaria vesca HOM05D004302 ORTHO05D004939 1.8e-08 64.7 302 24.5
FAN14G3160 Fragaria x ananassa HOM05D004302 ORTHO05D004939 1.8e-08 64.7 302 24.5
Lalb_Chr04g0258341 Lupinus albus HOM05D004302 ORTHO05D004939 1.8e-08 64.7 291 25.1
FAN07G0920 Fragaria x ananassa HOM05D002809 ORTHO05D004563 2.3e-08 64.3 297 23.9
Pp3c3_32280 Physcomitrium patens HOM05D002809 ORTHO05D004563 2.3e-08 64.3 288 21.2
unitig_22.g6404 Utricularia gibba HOM05D002809 ORTHO05D004563 5.1e-08 63.2 304 24.0
Gorai.005G165900 Gossypium raimondii HOM05D002809 ORTHO05D004563 6.7e-08 62.8 306 23.2
Lalb_Chr10g0092641 Lupinus albus HOM05D004302 ORTHO05D004939 6.7e-08 62.8 293 24.9
Pp3c26_8170 Physcomitrium patens HOM05D004302 ORTHO05D026051 6.7e-08 62.8 329 23.1
FAN05G3039 Fragaria x ananassa HOM05D004302 ORTHO05D004939 8.7e-08 62.4 303 24.1
THA.LOC104820986 Tarenaya hassleriana HOM05D004302 ORTHO05D004939 8.7e-08 62.4 293 25.3
Actinidia18474 Actinidia chinensis HOM05D007162 ORTHO05D007631 1.5e-07 61.6 288 21.9
FAN09G3470 Fragaria x ananassa HOM05D004302 ORTHO05D004939 1.5e-07 61.6 303 24.1
Pp3c7_15830 Physcomitrium patens HOM05D021600 ORTHO05D030467 1.5e-07 61.6 234 25.2
Prupe.3G247500 Prunus persica HOM05D004302 ORTHO05D004939 2.5e-07 60.8 301 24.9
Haze_00858 Corylus avellana HOM05D007162 ORTHO05D007631 3.3e-07 60.5 285 23.2
Mapoly0072s0056 Marchantia polymorpha HOM05D004302 ORTHO05D004939 3.3e-07 60.5 344 23.8
Mapoly0168s0028 Marchantia polymorpha HOM05D003005 ORTHO05D007546 3.3e-07 60.5 293 22.2
Sed0014031 Sechium edule HOM05D002809 ORTHO05D004563 3.3e-07 60.5 287 22.6
SEGI_19604 Sequoiadendron giganteum HOM05D005561 ORTHO05D006834 4.3e-07 60.1 124 32.3
SEGI_32322 Sequoiadendron giganteum HOM05D005561 ORTHO05D006834 4.3e-07 60.1 124 32.3
ATR0691G100 Amborella trichopoda HOM05D004302 ORTHO05D004939 5.6e-07 59.7 295 25.8
ECA238G3553 Erigeron canadensis HOM05D004302 ORTHO05D004939 5.6e-07 59.7 293 23.9
CSS0000127 Camellia sinensis var. sinensis HOM05D007162 ORTHO05D007631 7.4e-07 59.3 278 21.9
CSS0043507 Camellia sinensis var. sinensis HOM05D007162 ORTHO05D007631 7.4e-07 59.3 278 21.9
Mapoly0270s0001 Marchantia polymorpha HOM05D035083 ORTHO05D036668 7.4e-07 59.3 222 26.1
BcaC05g26739 Brassica carinata HOM05D002809 ORTHO05D004563 1.3e-06 58.5 194 24.7
MELO3C022055.2 Cucumis melo HOM05D004302 ORTHO05D004939 1.3e-06 58.5 301 23.3
CsaV3_5G038750 Cucumis sativus L. HOM05D004302 ORTHO05D004939 1.3e-06 58.5 301 23.3
TAR624G0126 Trochodendron aralioides HOM05D006415 ORTHO05D008549 1.3e-06 58.5 176 28.4
Pp3c9_19230 Physcomitrium patens HOM05D021600 ORTHO05D015161 1.6e-06 58.2 248 25.0
Sc13g0007060 Simmondsia chinensis HOM05D007162 ORTHO05D007631 2.1e-06 57.8 296 22.3
RcHm_v2.0_Chr4g0426111 Rosa chinensis HOM05D007162 ORTHO05D007631 2.8e-06 57.4 290 22.8
Rhsim04G0242300 Rhododendron simsii HOM05D007162 ORTHO05D007631 3.7e-06 57.0 278 22.3
Lsat_1_v5_gn_2_1901 Lactuca sativa HOM05D005561 ORTHO05D006834 6.2e-06 56.2 229 22.3


User provided reference genes

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