Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c1_8300 Physcomitrium patens HOM05D005519 ORTHO05D006423 1.4e-63 246.1 121 100.0
AagrBONN_evm.TU.Sc2ySwM_117.629 Anthoceros agrestis HOM05D005519 ORTHO05D006423 7.8e-11 70.9 39 84.6
Mapoly0065s0010 Marchantia polymorpha HOM05D005519 ORTHO05D006423 2.3e-10 69.3 39 79.5
MBI04_g08940_MAGBIO Magnolia biondii HOM05D005519 ORTHO05D006423 2.5e-09 65.9 39 74.4
vmacro01488 Vaccinium macrocarpon HOM05D005519 ORTHO05D006423 1.2e-08 63.5 39 69.2
CDE04G2354 Ceratophyllum demersum HOM05D005519 ORTHO05D006423 2.1e-08 62.8 39 69.2
ClCG08G008840 Citrullus lanatus HOM05D005519 ORTHO05D006423 2.8e-08 62.4 39 66.7
COL.COLO4_03361 Corchorus olitorius HOM05D005519 ORTHO05D006423 2.8e-08 62.4 39 66.7
Duzib116G0927 Durio zibethinus HOM05D005519 ORTHO05D006423 2.8e-08 62.4 39 66.7
Gohir.D02G068600 Gossypium hirsutum HOM05D005519 ORTHO05D006423 2.8e-08 62.4 39 66.7
Gorai.005G077500 Gossypium raimondii HOM05D005519 ORTHO05D006423 2.8e-08 62.4 39 66.7
Sed0015682 Sechium edule HOM05D005519 ORTHO05D006423 2.8e-08 62.4 39 69.2
Thecc.08G158600 Theobroma cacao HOM05D005519 ORTHO05D006423 2.8e-08 62.4 39 66.7
HPP92_000679 Vanilla planifolia HOM05D005519 ORTHO05D006423 2.8e-08 62.4 39 69.2
Zm00001eb357520 Zea mays HOM05D005519 ORTHO05D006423 2.8e-08 62.4 39 66.7
CBR_g32244 Chara braunii HOM05D005519 ORTHO05D006423 3.6e-08 62.0 37 70.3
CsaV3_6G005050 Cucumis sativus L. HOM05D005519 ORTHO05D006423 3.6e-08 62.0 39 66.7
PSO541G5828 Papaver somniferum HOM05D005519 ORTHO05D006423 3.6e-08 62.0 39 66.7
PSO675G0400 Papaver somniferum HOM05D005519 ORTHO05D006423 3.6e-08 62.0 39 66.7
ATR0580G316 Amborella trichopoda HOM05D005519 ORTHO05D006423 4.7e-08 61.6 39 66.7
Duzib093G1843 Durio zibethinus HOM05D005519 ORTHO05D006423 4.7e-08 61.6 39 66.7
SMO139G0065 Selaginella moellendorffii HOM05D005519 ORTHO05D006423 4.7e-08 61.6 39 66.7
Sc26g0002910 Simmondsia chinensis HOM05D005519 ORTHO05D006423 4.7e-08 61.6 39 66.7
Zm00001eb160790 Zea mays HOM05D005519 ORTHO05D006423 4.7e-08 61.6 39 64.1
Ah.05g168160 Amaranthus hybridus HOM05D005519 ORTHO05D006423 6.2e-08 61.2 39 64.1
AUR62026639 Chenopodium quinoa HOM05D003947 ORTHO05D004614 6.2e-08 61.2 39 64.1
AUR62034898 Chenopodium quinoa HOM05D005519 ORTHO05D006423 6.2e-08 61.2 39 64.1
DCAR_001160 Daucus carota HOM05D005519 ORTHO05D006423 6.2e-08 61.2 39 64.1
ECA246G0665 Erigeron canadensis HOM05D003947 ORTHO05D006423 6.2e-08 61.2 39 64.1
Lj7A382T71 Lonicera japonica HOM05D005519 ORTHO05D006423 6.2e-08 61.2 39 64.1
Os01g0589800 Oryza sativa ssp. japonica HOM05D005519 ORTHO05D006423 6.2e-08 61.2 39 64.1
TAR381G0167 Trochodendron aralioides HOM05D005519 ORTHO05D006423 6.2e-08 61.2 39 66.7
unitig_26.g9895 Utricularia gibba HOM05D005519 ORTHO05D006423 6.2e-08 61.2 39 66.7
Lalb_Chr19g0130091 Lupinus albus HOM05D005519 ORTHO05D006423 8.1e-08 60.8 39 66.7
Phvul.004G091300 Phaseolus vulgaris HOM05D005519 ORTHO05D006423 8.1e-08 60.8 39 64.1
Phvul.007G083000 Phaseolus vulgaris HOM05D005519 ORTHO05D006423 8.1e-08 60.8 39 64.1
VMungo0720G0436 Vigna mungo HOM05D005519 ORTHO05D006423 8.1e-08 60.8 39 64.1
Glyma.02G079400 Glycine max HOM05D005519 ORTHO05D006423 1.1e-07 60.5 39 64.1
Glyma.10G222100 Glycine max HOM05D005519 ORTHO05D006423 1.1e-07 60.5 39 64.1
Glyma.16G163800 Glycine max HOM05D005519 ORTHO05D006423 1.1e-07 60.5 39 64.1
Glyma.20G169500 Glycine max HOM05D005519 ORTHO05D006423 1.1e-07 60.5 39 64.1
Medtr1g098280 Medicago truncatula HOM05D005519 ORTHO05D006423 1.1e-07 60.5 39 64.1
Nn5g28816 Nelumbo nucifera HOM05D005519 ORTHO05D006423 1.1e-07 60.5 39 64.1
Nitab4.5_0001103g0040 Nicotiana tabacum HOM05D005519 ORTHO05D006423 1.1e-07 60.5 39 64.1
Solyc12g056620.2 Solanum lycopersicum HOM05D005519 ORTHO05D006423 1.1e-07 60.5 39 64.1
Sopen12g029280 Solanum pennellii HOM05D005519 ORTHO05D006423 1.1e-07 60.5 39 64.1
arahy.Tifrunner.gnm1.ann1.8F5AL7 Arachis hypogaea HOM05D005519 ORTHO05D006423 1.4e-07 60.1 39 64.1
arahy.Tifrunner.gnm1.ann1.SKG6R6 Arachis hypogaea HOM05D005519 ORTHO05D006423 1.4e-07 60.1 39 64.1
Lj2g0026694 Lotus japonicus HOM05D005519 ORTHO05D006423 1.4e-07 60.1 39 64.1
Nitab4.5_0000872g0010 Nicotiana tabacum HOM05D005519 ORTHO05D006423 1.4e-07 60.1 39 64.1
MSTRG.25301 Avicennia marina HOM05D005519 ORTHO05D006423 1.8e-07 59.7 39 61.5
CSS0002205 Camellia sinensis var. sinensis HOM05D005519 ORTHO05D006423 1.8e-07 59.7 39 61.5
CAN.G26.8 Capsicum annuum HOM05D005519 ORTHO05D006423 1.8e-07 59.7 39 61.5
CiPaw.15G012900 Carya illinoinensis HOM05D005519 ORTHO05D006423 1.8e-07 59.7 39 61.5
Dinv25895 Davidia involucrata HOM05D005519 ORTHO05D006423 1.8e-07 59.7 39 61.5
FvH4_2g13070 Fragaria vesca HOM05D005519 ORTHO05D006423 1.8e-07 59.7 39 61.5
Hma1.2p1_0358F.1_g134710 Hydrangea macrophylla HOM05D005519 ORTHO05D006423 1.8e-07 59.7 39 61.5
Lsat_1_v5_gn_6_101660 Lactuca sativa HOM05D005519 ORTHO05D006423 1.8e-07 59.7 39 61.5
Lj4A703G50 Lonicera japonica HOM05D005519 ORTHO05D006423 1.8e-07 59.7 39 61.5
Lj5g0019555 Lotus japonicus HOM05D005519 ORTHO05D006423 1.8e-07 59.7 39 61.5
Manes.02G182800 Manihot esculenta HOM05D005519 ORTHO05D006423 1.8e-07 59.7 39 61.5
Nitab4.5_0000099g0170 Nicotiana tabacum HOM05D005519 ORTHO05D006423 1.8e-07 59.7 39 61.5
Nitab4.5_0002812g0030 Nicotiana tabacum HOM05D005519 ORTHO05D006423 1.8e-07 59.7 39 61.5
Peaxi162Scf00160g01746 Petunia axillaris HOM05D005519 ORTHO05D006423 1.8e-07 59.7 39 61.5
Peaxi162Scf00360g00028 Petunia axillaris HOM05D005519 ORTHO05D006423 1.8e-07 59.7 39 61.5
PGR042G3808 Punica granatum HOM05D005519 ORTHO05D006423 1.8e-07 59.7 39 61.5
QL02p038173 Quercus lobata HOM05D005519 ORTHO05D006423 1.8e-07 59.7 38 63.2
RcHm_v2.0_Chr6g0274331 Rosa chinensis HOM05D005519 ORTHO05D006423 1.8e-07 59.7 39 61.5
Sp1g29260 Schrenkiella parvula HOM05D005519 ORTHO05D006423 1.8e-07 59.7 48 52.1
PGSC0003DMG400018793 Solanum tuberosum HOM05D005519 ORTHO05D006423 1.8e-07 59.7 39 61.5
SGA_v2.0_scaffold108G30869 Striga asiatica HOM05D005519 ORTHO05D006423 1.8e-07 59.7 39 61.5
Atru.chr13.2018 Acer truncatum HOM05D005519 ORTHO05D006423 2.3e-07 59.3 39 61.5
CANSAT25G1666 Cannabis sativa HOM05D005519 ORTHO05D006423 2.3e-07 59.3 39 64.1
CAN.G495.8 Capsicum annuum HOM05D005519 ORTHO05D006423 2.3e-07 59.3 39 61.5
CiPaw.16G008800 Carya illinoinensis HOM05D005519 ORTHO05D006423 2.3e-07 59.3 39 59.0
Ciclev10002625m.g Citrus clementina HOM05D005519 ORTHO05D006423 2.3e-07 59.3 39 61.5
Migut.N03201 Erythranthe guttata HOM05D005519 ORTHO05D006423 2.3e-07 59.3 39 61.5
HanXRQChr11g0320251 Helianthus annuus HOM05D005519 ORTHO05D006423 2.3e-07 59.3 39 61.5
Lalb_Chr03g0035541 Lupinus albus HOM05D005519 ORTHO05D006423 2.3e-07 59.3 39 64.1
MD05G1032800 Malus domestica HOM05D005519 ORTHO05D006423 2.3e-07 59.3 39 61.5
MD10G1033800 Malus domestica HOM05D005519 ORTHO05D006423 2.3e-07 59.3 39 61.5
Manes.18G094400 Manihot esculenta HOM05D005519 ORTHO05D006423 2.3e-07 59.3 39 61.5
Potri.002G065000 Populus trichocarpa HOM05D005519 ORTHO05D006423 2.3e-07 59.3 39 61.5
Potri.005G196100 Populus trichocarpa HOM05D005519 ORTHO05D006423 2.3e-07 59.3 39 61.5
Prupe.8G039900 Prunus persica HOM05D005519 ORTHO05D006423 2.3e-07 59.3 39 61.5
Rhsim11G0087200 Rhododendron simsii HOM05D005519 ORTHO05D006423 2.3e-07 59.3 39 61.5
Sabra02G0051900 Salix brachista HOM05D005519 ORTHO05D006423 2.3e-07 59.3 39 61.5
Sabra05G0149500 Salix brachista HOM05D005519 ORTHO05D006423 2.3e-07 59.3 39 61.5
Solyc04g071930.4 Solanum lycopersicum HOM05D005519 ORTHO05D006423 2.3e-07 59.3 39 61.5
Sopen04g027910 Solanum pennellii HOM05D005519 ORTHO05D006423 2.3e-07 59.3 39 61.5
PGSC0003DMG400025068 Solanum tuberosum HOM05D005519 ORTHO05D006423 2.3e-07 59.3 39 61.5
TWI32G0061 Tripterygium wilfordii HOM05D005519 ORTHO05D006423 2.3e-07 59.3 39 61.5
TWI34G0476 Tripterygium wilfordii HOM05D005519 ORTHO05D006423 2.3e-07 59.3 39 61.5
VMungo0464G1678 Vigna mungo HOM05D005519 ORTHO05D006423 2.3e-07 59.3 39 61.5
GSVIVG01034578001 Vitis vinifera HOM05D005519 ORTHO05D006423 2.3e-07 59.3 39 61.5
Ca_10667_v3 Cicer arietinum L. HOM05D005519 ORTHO05D006423 3.1e-07 58.9 39 61.5
Migut.C00964 Erythranthe guttata HOM05D005519 ORTHO05D006423 3.1e-07 58.9 39 59.0
Gohir.A05G246000 Gossypium hirsutum HOM05D005519 ORTHO05D006423 3.1e-07 58.9 39 61.5
Gohir.D05G247500 Gossypium hirsutum HOM05D005519 ORTHO05D006423 3.1e-07 58.9 39 61.5
Gorai.009G258300 Gossypium raimondii HOM05D005519 ORTHO05D006423 3.1e-07 58.9 39 61.5
QL02p037831 Quercus lobata HOM05D005519 ORTHO05D006423 3.1e-07 58.9 38 60.5
TPR.G17016 Trifolium pratense HOM05D005519 ORTHO05D006423 3.1e-07 58.9 39 61.5
Cpa.g.sc49.79 Carica papaya HOM05D005519 ORTHO05D006423 4.0e-07 58.5 39 59.0
Cfa018287 Carpinus fangiana HOM05D005519 ORTHO05D006423 5.2e-07 58.2 39 59.0
Haze_17800 Corylus avellana HOM05D005519 ORTHO05D006423 5.2e-07 58.2 39 59.0
AL1G48440 Arabidopsis lyrata HOM05D005519 ORTHO05D006423 8.9e-07 57.4 39 59.0
Cc10_g15180 Coffea canephora HOM05D005519 ORTHO05D006423 8.9e-07 57.4 39 59.0
Psat6g190880 Pisum sativum HOM05D005519 ORTHO05D006423 8.9e-07 57.4 39 59.0
Aa31LG6G8220 Aethionema arabicum HOM05D005519 ORTHO05D006423 1.2e-06 57.0 39 59.0
AT1G34000 Arabidopsis thaliana HOM05D005519 ORTHO05D006423 1.2e-06 57.0 39 59.0
BcaB04g17909 Brassica carinata HOM05D005519 ORTHO05D006423 1.2e-06 57.0 39 59.0
BcaB07g33022 Brassica carinata HOM05D005519 ORTHO05D006423 1.2e-06 57.0 39 59.0
A08p08390 Brassica napus HOM05D005519 ORTHO05D006423 1.2e-06 57.0 39 59.0
A09p32470 Brassica napus HOM05D005519 ORTHO05D006423 1.2e-06 57.0 39 59.0
C06p12090 Brassica napus HOM05D005519 ORTHO05D006423 1.2e-06 57.0 39 59.0
BolC6t36346H Brassica oleracea HOM05D005519 ORTHO05D006423 1.2e-06 57.0 39 59.0
BolC8t47881H Brassica oleracea HOM05D005519 ORTHO05D006423 1.2e-06 57.0 39 59.0
BraA08t32855Z Brassica rapa HOM05D005519 ORTHO05D006423 1.2e-06 57.0 39 59.0
BraA09t38789Z Brassica rapa HOM05D005519 ORTHO05D006423 1.2e-06 57.0 39 59.0
Carub.0001s3208 Capsella rubella HOM05D005519 ORTHO05D006423 1.2e-06 57.0 39 59.0
CARHR033380 Cardamine hirsuta HOM05D005519 ORTHO05D006423 1.2e-06 57.0 39 59.0
Cre06.g251150 Chlamydomonas reinhardtii HOM05D005519 ORTHO05D006423 1.2e-06 57.0 39 61.5
Thhalv10008704m.g Eutrema salsugineum HOM05D005519 ORTHO05D006423 1.2e-06 57.0 39 59.0
THA.LOC104806763 Tarenaya hassleriana HOM05D005519 ORTHO05D006423 1.2e-06 57.0 39 59.0
THA.LOC104825113 Tarenaya hassleriana HOM05D005519 ORTHO05D006423 1.2e-06 57.0 39 59.0
Lsat_1_v5_gn_9_42101 Lactuca sativa HOM05D005519 ORTHO05D006423 1.5e-06 56.6 37 62.2
BcaC08g43825 Brassica carinata HOM05D005519 ORTHO05D006423 2.6e-06 55.8 39 56.4
FAN15G1092 Fragaria x ananassa HOM05D003947 ORTHO05D004614 2.6e-06 55.8 34 64.7
FAN24G1125 Fragaria x ananassa HOM05D003947 ORTHO05D004614 2.6e-06 55.8 34 64.7


User provided reference genes

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