Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c1_7820 Physcomitrium patens HOM05D003475 ORTHO05D004155 6.3e-44 180.3 83 100.0
Pp3c1_10400 Physcomitrium patens HOM05D003475 ORTHO05D004155 1.3e-20 102.8 74 66.2
THA.LOC104823807 Tarenaya hassleriana HOM05D003475 ORTHO05D004155 1.9e-16 89.0 67 59.7
Hma1.2p1_0260F.1_g104710 Hydrangea macrophylla HOM05D003475 ORTHO05D004155 4.2e-16 87.8 67 56.7
Duzib116G0360 Durio zibethinus HOM05D003475 ORTHO05D004155 2.1e-15 85.5 67 58.2
Lj4C50T5 Lonicera japonica HOM05D003475 ORTHO05D004155 4.7e-15 84.3 67 55.2
FAN15G0079 Fragaria x ananassa HOM05D003475 ORTHO05D004155 6.1e-15 84.0 67 59.7
Dinv42129 Davidia involucrata HOM05D003475 ORTHO05D004155 8.0e-15 83.6 67 59.7
Eucgr.F00026 Eucalyptus grandis HOM05D003475 ORTHO05D004155 1.0e-14 83.2 67 53.7
FAN27G1383 Fragaria x ananassa HOM05D003475 ORTHO05D004155 1.0e-14 83.2 67 58.2
Nitab4.5_0004930g0010 Nicotiana tabacum HOM05D003475 ORTHO05D004155 1.0e-14 83.2 67 55.2
CAN.G1288.14 Capsicum annuum HOM05D003475 ORTHO05D004155 1.4e-14 82.8 67 56.7
RcHm_v2.0_Chr6g0307051 Rosa chinensis HOM05D003475 ORTHO05D004155 1.8e-14 82.4 67 58.2
Actinidia27942 Actinidia chinensis HOM05D003475 ORTHO05D004155 2.3e-14 82.0 69 56.5
FvH4_2g34950 Fragaria vesca HOM05D003475 ORTHO05D004155 2.3e-14 82.0 67 58.2
THA.LOC104821889 Tarenaya hassleriana HOM05D003475 ORTHO05D004155 2.3e-14 82.0 67 56.7
FAN20G0705 Fragaria x ananassa HOM05D003475 ORTHO05D004155 3.0e-14 81.6 67 58.2
Hma1.2p1_1543F.1_g289760 Hydrangea macrophylla HOM05D003475 ORTHO05D004155 3.0e-14 81.6 67 56.7
COL.COLO4_26452 Corchorus olitorius HOM05D003475 ORTHO05D004155 4.0e-14 81.3 67 55.2
Nitab4.5_0003438g0010 Nicotiana tabacum HOM05D003475 ORTHO05D004155 4.0e-14 81.3 67 53.7
Thecc.08G013900 Theobroma cacao HOM05D003475 ORTHO05D004155 4.0e-14 81.3 67 56.7
Eucgr.F00027 Eucalyptus grandis HOM05D003475 ORTHO05D004155 5.2e-14 80.9 67 50.7
Potri.002G128700 Populus trichocarpa HOM05D003475 ORTHO05D004155 5.2e-14 80.9 67 55.2
TWI56G0590 Tripterygium wilfordii HOM05D003475 ORTHO05D004155 5.2e-14 80.9 67 52.2
CSS0002070 Camellia sinensis var. sinensis HOM05D003475 ORTHO05D004155 6.8e-14 80.5 68 55.9
ClCG05G019590 Citrullus lanatus HOM05D003475 ORTHO05D004155 6.8e-14 80.5 67 52.2
MBI02_g21206_MAGBIO Magnolia biondii HOM05D003475 ORTHO05D004155 6.8e-14 80.5 73 49.3
Lj6g0027326 Lotus japonicus HOM05D003475 ORTHO05D004155 8.8e-14 80.1 67 55.2
TWI56G1470 Tripterygium wilfordii HOM05D003475 ORTHO05D004155 8.8e-14 80.1 67 56.7
CiPaw.15G063700 Carya illinoinensis HOM05D003475 ORTHO05D004155 1.2e-13 79.7 67 53.7
MD08G1107200 Malus domestica HOM05D003475 ORTHO05D004155 1.2e-13 79.7 67 55.2
Solyc04g049630.3 Solanum lycopersicum HOM05D003475 ORTHO05D004155 1.2e-13 79.7 67 52.2
Sopen04g019770 Solanum pennellii HOM05D003475 ORTHO05D004155 1.2e-13 79.7 67 52.2
Mapoly0002s0297 Marchantia polymorpha HOM05D003475 ORTHO05D004155 1.5e-13 79.3 68 52.9
Sp7g05960 Schrenkiella parvula HOM05D003475 ORTHO05D004155 1.5e-13 79.3 67 53.7
CDE06G0513 Ceratophyllum demersum HOM05D003475 ORTHO05D004155 2.0e-13 79.0 73 49.3
Dinv36000 Davidia involucrata HOM05D003475 ORTHO05D004155 2.0e-13 79.0 67 53.7
Eucgr.F00028 Eucalyptus grandis HOM05D003475 ORTHO05D004155 2.0e-13 79.0 67 50.7
QL02p006064 Quercus lobata HOM05D003475 ORTHO05D004155 2.0e-13 79.0 67 55.2
Atru.chr13.624 Acer truncatum HOM05D003475 ORTHO05D004155 2.6e-13 78.6 67 53.7
MD15G1087800 Malus domestica HOM05D003475 ORTHO05D004155 2.6e-13 78.6 67 55.2
TAR381G1600 Trochodendron aralioides HOM05D003475 ORTHO05D004155 2.6e-13 78.6 68 51.5
GSVIVG01009565001 Vitis vinifera HOM05D003475 ORTHO05D004155 3.4e-13 78.2 67 53.7
Ciclev10003676m.g Citrus clementina HOM05D003475 ORTHO05D004155 4.4e-13 77.8 67 52.2
Peaxi162Scf00929g00519 Petunia axillaris HOM05D003475 ORTHO05D004155 7.5e-13 77.0 68 51.5
CANSAT25G2609 Cannabis sativa HOM05D003475 ORTHO05D004155 1.3e-12 76.3 67 49.3
Haze_17571 Corylus avellana HOM05D003475 ORTHO05D004155 1.3e-12 76.3 67 52.2
Phvul.006G042600 Phaseolus vulgaris HOM05D003475 ORTHO05D004155 1.3e-12 76.3 67 50.7
Hund26615 Selenicereus undatus HOM05D003475 ORTHO05D004155 1.3e-12 76.3 67 50.7
TPR.G16593 Trifolium pratense HOM05D003475 ORTHO05D004155 1.3e-12 76.3 67 53.7
Medtr3g051310 Medicago truncatula HOM05D003475 ORTHO05D004155 1.7e-12 75.9 67 53.7
Os06g0215400 Oryza sativa ssp. japonica HOM05D003475 ORTHO05D004155 1.7e-12 75.9 71 46.5
PSO675G3178 Papaver somniferum HOM05D003475 ORTHO05D004155 1.7e-12 75.9 67 47.8
DCAR_008786 Daucus carota HOM05D003475 ORTHO05D004155 2.2e-12 75.5 68 50.0
Cpa.g.c26337.1 Carica papaya HOM05D003475 ORTHO05D004155 2.8e-12 75.1 67 53.7
Actinidia15262 Actinidia chinensis HOM05D003475 ORTHO05D004155 3.7e-12 74.7 67 50.7
CSS0007643 Camellia sinensis var. sinensis HOM05D003475 ORTHO05D004155 3.7e-12 74.7 67 50.7
Ca_05516_v3 Cicer arietinum L. HOM05D003475 ORTHO05D004155 3.7e-12 74.7 67 52.2
MELO3C016729.2 Cucumis melo HOM05D003475 ORTHO05D004155 3.7e-12 74.7 67 53.7
Sed0005929 Sechium edule HOM05D003475 ORTHO05D004155 3.7e-12 74.7 67 47.8
GSVIVG01009564001 Vitis vinifera HOM05D003475 ORTHO05D004155 3.7e-12 74.7 67 52.2
Aqoxy6G01419 Aquilegia oxysepala HOM05D003475 ORTHO05D004155 4.8e-12 74.3 69 49.3
CsaV3_4G034060 Cucumis sativus L. HOM05D003475 ORTHO05D004155 4.8e-12 74.3 67 52.2
arahy.Tifrunner.gnm1.ann1.VT20D2 Arachis hypogaea HOM05D003475 ORTHO05D004155 6.3e-12 73.9 67 49.3
Cfa018505 Carpinus fangiana HOM05D003475 ORTHO05D004155 6.3e-12 73.9 67 50.7
Rhsim06G0046300 Rhododendron simsii HOM05D003475 ORTHO05D004155 6.3e-12 73.9 67 50.7
Sc08g0000080 Simmondsia chinensis HOM05D003475 ORTHO05D004155 6.3e-12 73.9 67 52.2
arahy.Tifrunner.gnm1.ann1.W6GX7N Arachis hypogaea HOM05D003475 ORTHO05D004155 8.3e-12 73.6 67 49.3
Cc10_g03890 Coffea canephora HOM05D003475 ORTHO05D004155 8.3e-12 73.6 67 49.3
SEGI_11952 Sequoiadendron giganteum HOM05D003475 ORTHO05D004155 8.3e-12 73.6 67 50.7
VMungo0540G2323 Vigna mungo HOM05D003475 ORTHO05D004155 8.3e-12 73.6 67 49.3
Lj9A359T75 Lonicera japonica HOM05D003475 ORTHO05D004155 1.1e-11 73.2 68 51.5
Oeu032239.1 Olea europaea HOM05D003475 ORTHO05D004155 1.1e-11 73.2 67 49.3
PSO675G3306 Papaver somniferum HOM05D003475 ORTHO05D004155 1.1e-11 73.2 74 45.9
Prupe.1G441500 Prunus persica HOM05D003475 ORTHO05D004155 1.1e-11 73.2 67 53.7
DCAR_003620 Daucus carota HOM05D003475 ORTHO05D004155 1.4e-11 72.8 67 47.8
PGR083G1228 Punica granatum HOM05D003475 ORTHO05D004155 1.4e-11 72.8 67 47.8
Sc02g0006850 Simmondsia chinensis HOM05D003475 ORTHO05D004155 1.4e-11 72.8 67 46.3
CsaV3_4G034070 Cucumis sativus L. HOM05D003475 ORTHO05D004155 1.8e-11 72.4 67 49.3
Migut.C00608 Erythranthe guttata HOM05D003475 ORTHO05D004155 1.8e-11 72.4 67 50.7
Glyma.08G315400 Glycine max HOM05D003475 ORTHO05D004155 1.8e-11 72.4 67 50.7
Solyc10g050840.3 Solanum lycopersicum HOM05D003475 ORTHO05D004155 1.8e-11 72.4 67 53.7
SGA_v2.0_scaffold217G42435 Striga asiatica HOM05D003475 ORTHO05D004155 1.8e-11 72.4 67 50.7
CsaV3_4G034080 Cucumis sativus L. HOM05D003475 ORTHO05D004155 2.4e-11 72.0 67 47.8
Gohir.D06G014300 Gossypium hirsutum HOM05D003475 ORTHO05D004155 2.4e-11 72.0 67 53.7
Gorai.010G016900 Gossypium raimondii HOM05D003475 ORTHO05D004155 2.4e-11 72.0 67 53.7
Aa31LG9G17910 Aethionema arabicum HOM05D003475 ORTHO05D004155 3.1e-11 71.6 67 47.8
Cc10_g03900 Coffea canephora HOM05D003475 ORTHO05D004155 3.1e-11 71.6 67 47.8
Gohir.A06G016100 Gossypium hirsutum HOM05D003475 ORTHO05D004155 3.1e-11 71.6 67 53.7
Nn5g30184 Nelumbo nucifera HOM05D003475 ORTHO05D004155 3.1e-11 71.6 67 49.3
MSTRG.25109 Avicennia marina HOM05D003475 ORTHO05D004155 4.1e-11 71.2 67 46.3
Sopen10g022400 Solanum pennellii HOM05D003475 ORTHO05D004155 5.4e-11 70.9 67 52.2
PGSC0003DMG400008244 Solanum tuberosum HOM05D003475 ORTHO05D004155 5.4e-11 70.9 66 54.5
Zm00001eb373040 Zea mays HOM05D003475 ORTHO05D004155 5.4e-11 70.9 67 46.3
vmacro21560 Vaccinium macrocarpon HOM05D003475 ORTHO05D004155 7.0e-11 70.5 67 50.7
PSO541G5638 Papaver somniferum HOM05D003475 ORTHO05D004155 9.1e-11 70.1 74 44.6
Aqoxy6G01420 Aquilegia oxysepala HOM05D003475 ORTHO05D004155 1.2e-10 69.7 67 46.3
Manes.18G034500 Manihot esculenta HOM05D003475 ORTHO05D004155 1.2e-10 69.7 67 44.8
Peaxi162Scf00003g01723 Petunia axillaris HOM05D003475 ORTHO05D004155 1.2e-10 69.7 67 50.7
BolC3t21632H Brassica oleracea HOM05D003475 ORTHO05D004155 1.6e-10 69.3 64 53.1
SalBow7G2818 Salvia bowleyana HOM05D003475 ORTHO05D004155 1.6e-10 69.3 67 49.3
arahy.Tifrunner.gnm1.ann1.DEGU9R Arachis hypogaea HOM05D003475 ORTHO05D004155 2.7e-10 68.6 67 46.3
arahy.Tifrunner.gnm1.ann1.Y23KDA Arachis hypogaea HOM05D003475 ORTHO05D004155 3.5e-10 68.2 67 46.3
C03p93340 Brassica napus HOM05D003475 ORTHO05D004155 3.5e-10 68.2 64 53.1
Nitab4.5_0000876g0160 Nicotiana tabacum HOM05D003475 ORTHO05D004155 3.5e-10 68.2 67 50.7
EL10Ac1g01808 Beta vulgaris HOM05D003475 ORTHO05D004155 4.5e-10 67.8 67 46.3
CSS0021204 Camellia sinensis var. sinensis HOM05D003475 ORTHO05D004155 5.9e-10 67.4 68 50.0
Nitab4.5_0002673g0070 Nicotiana tabacum HOM05D003475 ORTHO05D004155 5.9e-10 67.4 67 49.3
A08p00170 Brassica napus HOM05D003475 ORTHO05D004155 7.7e-10 67.0 64 51.6
BraA08t32073Z Brassica rapa HOM05D003475 ORTHO05D004155 7.7e-10 67.0 64 51.6
Lsat_1_v5_gn_1_54780 Lactuca sativa HOM05D003475 ORTHO05D004155 7.7e-10 67.0 67 44.8
Phvul.006G042700 Phaseolus vulgaris HOM05D003475 ORTHO05D004155 7.7e-10 67.0 67 49.3
SEGI_19056 Sequoiadendron giganteum HOM05D003475 ORTHO05D004155 7.7e-10 67.0 67 49.3
Ah.11g043410 Amaranthus hybridus HOM05D003475 ORTHO05D004155 1.3e-09 66.2 67 44.8
HPP92_004258 Vanilla planifolia HOM05D003475 ORTHO05D004155 1.3e-09 66.2 73 42.5
CBR_g23970 Chara braunii HOM05D003475 ORTHO05D004155 1.7e-09 65.9 52 53.8
Glyma.18G098400 Glycine max HOM05D003475 ORTHO05D004155 1.7e-09 65.9 67 46.3
Lalb_Chr18g0049301 Lupinus albus HOM05D003475 ORTHO05D004155 2.2e-09 65.5 67 50.7
FvH4_2g34941 Fragaria vesca HOM05D003475 ORTHO05D004155 2.9e-09 65.1 64 50.0
FAN27G2115 Fragaria x ananassa HOM05D003475 ORTHO05D004155 2.9e-09 65.1 64 50.0
PSO675G9051 Papaver somniferum HOM05D003475 ORTHO05D004155 2.9e-09 65.1 74 41.9
HPP92_004236 Vanilla planifolia HOM05D003475 ORTHO05D004155 2.9e-09 65.1 73 41.1
ECA248G1217 Erigeron canadensis HOM05D003475 ORTHO05D004155 3.8e-09 64.7 67 46.3
Thhalv10003712m.g Eutrema salsugineum HOM05D003475 ORTHO05D004155 3.8e-09 64.7 73 45.2
FAN20G3001 Fragaria x ananassa HOM05D003475 ORTHO05D004155 3.8e-09 64.7 64 50.0
Lsat_1_v5_gn_6_33061 Lactuca sativa HOM05D003475 ORTHO05D004155 3.8e-09 64.7 67 43.3
Psat4g195440 Pisum sativum HOM05D003475 ORTHO05D004155 3.8e-09 64.7 66 47.0
SHI08311 Sapria himalayana HOM05D003475 ORTHO05D004155 3.8e-09 64.7 67 44.8
ATR0097G003 Amborella trichopoda HOM05D003475 ORTHO05D004155 5.0e-09 64.3 63 46.0
AUR62022463 Chenopodium quinoa HOM05D003475 ORTHO05D004155 5.0e-09 64.3 67 44.8
SMO361G0429 Selaginella moellendorffii HOM05D003475 ORTHO05D004155 5.0e-09 64.3 68 47.1
AL7G45140 Arabidopsis lyrata HOM05D003475 ORTHO05D004155 6.5e-09 63.9 67 47.8
AT5G36210 Arabidopsis thaliana HOM05D003475 ORTHO05D004155 1.5e-08 62.8 67 47.8
HanXRQChr11g0349621 Helianthus annuus HOM05D003475 ORTHO05D004155 1.5e-08 62.8 67 40.3
Prupe.1G441400 Prunus persica HOM05D003475 ORTHO05D004155 1.5e-08 62.8 72 41.7
CARHR216560 Cardamine hirsuta HOM05D003475 ORTHO05D004155 1.9e-08 62.4 67 47.8
HanXRQChr13g0399111 Helianthus annuus HOM05D003475 ORTHO05D004155 1.9e-08 62.4 67 44.8
VMungo0540G0248 Vigna mungo HOM05D003475 ORTHO05D004155 1.9e-08 62.4 67 47.8
Carub.0007s3188 Capsella rubella HOM05D003475 ORTHO05D004155 2.5e-08 62.0 67 47.8
ECA233G1971 Erigeron canadensis HOM05D003475 ORTHO05D004155 3.2e-08 61.6 67 44.8
MD08G1107100 Malus domestica HOM05D003475 ORTHO05D004155 4.2e-08 61.2 74 43.2
Sabra02G0100800 Salix brachista HOM05D003475 ORTHO05D004155 7.2e-08 60.5 67 46.3
Zm00001eb373080 Zea mays HOM05D003475 ORTHO05D004155 7.2e-08 60.5 67 41.8
AUR62040061 Chenopodium quinoa HOM05D003475 ORTHO05D004155 1.2e-07 59.7 66 42.4
Os06g0215300 Oryza sativa ssp. japonica HOM05D003475 ORTHO05D004155 1.6e-07 59.3 73 38.4
vmacro19485 Vaccinium macrocarpon HOM05D003475 ORTHO05D004155 6.1e-07 57.4 49 51.0
Eucgr.F00025 Eucalyptus grandis HOM05D003475 ORTHO05D004155 3.0e-06 55.1 59 44.1


User provided reference genes

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