Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c1_7410 Physcomitrium patens HOM05D005184 ORTHO05D006222 3.1e-96 355.1 181 100.0
Mapoly0065s0085 Marchantia polymorpha HOM05D005184 ORTHO05D006222 1.2e-60 236.9 177 68.4
Nn4g22873 Nelumbo nucifera HOM05D005184 ORTHO05D006222 7.7e-55 217.6 170 62.9
Pp3c7_23840 Physcomitrium patens HOM05D005184 ORTHO05D006222 1.3e-54 216.9 133 81.2
Cfa009129 Carpinus fangiana HOM05D005184 ORTHO05D006222 5.0e-54 214.9 178 61.8
Manes.01G197300 Manihot esculenta HOM05D005184 ORTHO05D006222 2.5e-53 212.6 177 61.0
CiPaw.05G149300 Carya illinoinensis HOM05D005184 ORTHO05D006222 9.4e-53 210.7 168 62.5
Actinidia27771 Actinidia chinensis HOM05D005184 ORTHO05D006222 4.7e-52 208.4 179 59.8
Lsat_1_v5_gn_4_6340 Lactuca sativa HOM05D005184 ORTHO05D006222 6.1e-52 208.0 174 60.3
HanXRQChr04g0103681 Helianthus annuus HOM05D005184 ORTHO05D006222 8.0e-52 207.6 174 59.8
Potri.008G146200 Populus trichocarpa HOM05D005184 ORTHO05D006222 8.0e-52 207.6 175 58.9
FvH4_4g34930 Fragaria vesca HOM05D005184 ORTHO05D006222 1.8e-51 206.5 175 57.7
PGR119G0379 Punica granatum HOM05D005184 ORTHO05D006222 2.3e-51 206.1 167 62.3
Thecc.02G243600 Theobroma cacao HOM05D005184 ORTHO05D006222 2.3e-51 206.1 170 60.0
Gohir.D01G129700 Gossypium hirsutum HOM05D005184 ORTHO05D006222 3.0e-51 205.7 170 60.0
Ciclev10032867m.g Citrus clementina HOM05D005184 ORTHO05D006222 4.0e-51 205.3 173 60.1
COL.COLO4_19542 Corchorus olitorius HOM05D005184 ORTHO05D006222 4.0e-51 205.3 170 59.4
CANSAT01G1514 Cannabis sativa HOM05D005184 ORTHO05D006222 5.2e-51 204.9 172 59.3
Gohir.A01G139200 Gossypium hirsutum HOM05D005184 ORTHO05D006222 5.2e-51 204.9 170 60.0
Medtr8g063230 Medicago truncatula HOM05D005184 ORTHO05D006222 8.8e-51 204.1 170 61.2
TAR374G1061 Trochodendron aralioides HOM05D005184 ORTHO05D006222 2.0e-50 203.0 177 58.2
MELO3C012019.2 Cucumis melo HOM05D005184 ORTHO05D006222 2.6e-50 202.6 159 63.5
Atru.chr11.1971 Acer truncatum HOM05D005184 ORTHO05D006222 3.4e-50 202.2 168 59.5
CSS0033197 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 3.4e-50 202.2 178 57.9
Ca_22770_v3 Cicer arietinum L. HOM05D005184 ORTHO05D006222 3.4e-50 202.2 172 61.0
Phvul.003G054400 Phaseolus vulgaris HOM05D005184 ORTHO05D006222 4.4e-50 201.8 168 61.3
Glyma.08G290400 Glycine max HOM05D005184 ORTHO05D006222 5.7e-50 201.4 174 59.2
Potri.010G095601 Populus trichocarpa HOM05D005184 ORTHO05D006222 5.7e-50 201.4 168 58.3
CsaV3_5G031800 Cucumis sativus L. HOM05D005184 ORTHO05D006222 7.5e-50 201.1 170 61.2
Lalb_Chr11g0071121 Lupinus albus HOM05D005184 ORTHO05D006222 1.3e-49 200.3 168 61.9
Duzib268G0446 Durio zibethinus HOM05D005184 ORTHO05D006222 1.7e-49 199.9 170 57.6
Glyma.18G133800 Glycine max HOM05D005184 ORTHO05D006222 2.2e-49 199.5 167 59.9
PSO478G1620 Papaver somniferum HOM05D005184 ORTHO05D006222 3.7e-49 198.7 174 56.3
Sabra10G0068200 Salix brachista HOM05D005184 ORTHO05D006222 3.7e-49 198.7 185 54.1
MSTRG.614 Avicennia marina HOM05D005184 ORTHO05D006222 4.8e-49 198.4 173 57.2
Cc11_g14330 Coffea canephora HOM05D005184 ORTHO05D006222 6.3e-49 198.0 182 57.7
TPR.G32980 Trifolium pratense HOM05D005184 ORTHO05D006222 6.3e-49 198.0 169 60.4
arahy.Tifrunner.gnm1.ann1.GIV1JF Arachis hypogaea HOM05D005184 ORTHO05D006222 8.3e-49 197.6 177 58.2
Cpa.g.sc5.359 Carica papaya HOM05D005184 ORTHO05D006222 8.3e-49 197.6 173 57.2
Migut.E00145 Erythranthe guttata HOM05D005184 ORTHO05D006222 8.3e-49 197.6 171 56.7
PSO017G3562 Papaver somniferum HOM05D005184 ORTHO05D006222 1.1e-48 197.2 174 55.7
MD13G1087800 Malus domestica HOM05D005184 ORTHO05D006222 1.4e-48 196.8 187 55.1
CSS0049337 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 1.8e-48 196.4 174 56.9
TWI18G1303 Tripterygium wilfordii HOM05D005184 ORTHO05D006222 1.8e-48 196.4 166 59.0
VMungo0251G1371 Vigna mungo HOM05D005184 ORTHO05D006222 2.4e-48 196.1 163 61.3
MD16G1088100 Malus domestica HOM05D005184 ORTHO05D006222 3.1e-48 195.7 177 58.2
CDE04G2481 Ceratophyllum demersum HOM05D006272 ORTHO05D006222 9.1e-48 194.1 197 51.8
RcHm_v2.0_Chr5g0030111 Rosa chinensis HOM05D005184 ORTHO05D006222 1.6e-47 193.4 165 57.0
SMO117G0191 Selaginella moellendorffii HOM05D005184 ORTHO05D006222 1.6e-47 193.4 171 59.1
ECA234G0428 Erigeron canadensis HOM05D005184 ORTHO05D003386 2.0e-47 193.0 170 55.9
Lj4g0016473 Lotus japonicus HOM05D005184 ORTHO05D006222 3.5e-47 192.2 177 55.9
Rhsim12G0048500 Rhododendron simsii HOM05D005184 ORTHO05D006222 3.5e-47 192.2 188 55.9
Aqoxy3G03072 Aquilegia oxysepala HOM05D005184 ORTHO05D006222 4.5e-47 191.8 174 55.2
Sc04g0008930 Simmondsia chinensis HOM05D005184 ORTHO05D006222 1.0e-46 190.7 168 58.3
Oeu039485.1 Olea europaea HOM05D005184 ORTHO05D006222 2.9e-46 189.1 173 54.9
Gorai.002G161300 Gossypium raimondii HOM05D005184 ORTHO05D006222 6.6e-46 188.0 205 49.8
CBR_g30806 Chara braunii HOM05D005184 ORTHO05D006222 1.9e-45 186.4 179 55.3
Eucgr.B02549 Eucalyptus grandis HOM05D005184 ORTHO05D006222 4.2e-45 185.3 167 55.7
Psat4g125480 Pisum sativum HOM05D005184 ORTHO05D006222 4.2e-45 185.3 181 56.9
Oeu040755.2 Olea europaea HOM05D005184 ORTHO05D006222 5.5e-45 184.9 171 55.6
CSS0034024 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 7.2e-45 184.5 174 55.2
CSS0002866 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 9.5e-45 184.1 167 55.1
AagrBONN_evm.TU.Sc2ySwM_344.3206 Anthoceros agrestis HOM05D005184 ORTHO05D006222 1.2e-44 183.7 157 59.2
ClCG05G025100 Citrullus lanatus HOM05D005184 ORTHO05D006222 1.2e-44 183.7 158 58.9
Haze_12160 Corylus avellana HOM05D005184 ORTHO05D006222 3.6e-44 182.2 178 55.6
CBR_g30798 Chara braunii HOM05D005184 ORTHO05D006222 4.7e-44 181.8 179 54.2
FAN17G0007 Fragaria x ananassa HOM05D005184 ORTHO05D006222 2.3e-43 179.5 175 53.7
FAN22G1244 Fragaria x ananassa HOM05D005184 ORTHO05D006222 2.3e-43 179.5 175 53.7
FAN07G0314 Fragaria x ananassa HOM05D005184 ORTHO05D006222 4.0e-43 178.7 175 53.7
Os02g0741900 Oryza sativa ssp. japonica HOM05D005184 ORTHO05D006222 5.2e-43 178.3 172 54.1
FAN12G2936 Fragaria x ananassa HOM05D005184 ORTHO05D006222 1.2e-42 177.2 175 53.1
Medtr8g461280 Medicago truncatula HOM05D005184 ORTHO05D006222 2.0e-42 176.4 164 54.3
CSS0009826 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 2.6e-42 176.0 165 53.9
Zm00001eb194690 Zea mays HOM05D005184 ORTHO05D006222 9.8e-42 174.1 174 51.7
Zm00001eb254250 Zea mays HOM05D005184 ORTHO05D006222 1.7e-41 173.3 174 51.1
arahy.Tifrunner.gnm1.ann1.G4BVC6 Arachis hypogaea HOM05D005184 ORTHO05D006222 4.9e-41 171.8 236 43.6
CDE06G1803 Ceratophyllum demersum HOM05D005184 ORTHO05D006222 4.9e-41 171.8 175 53.1
DCAR_007099 Daucus carota HOM05D005184 ORTHO05D006222 8.3e-41 171.0 182 53.3
TAR622G1169 Trochodendron aralioides HOM05D005184 ORTHO05D006222 5.9e-39 164.9 166 54.2
AUR62005318 Chenopodium quinoa HOM05D005184 ORTHO05D006222 2.3e-38 162.9 136 62.5
HPP92_015265 Vanilla planifolia HOM05D000076 ORTHO05D002949 3.9e-38 162.2 170 53.5
GSVIVG01020163001 Vitis vinifera HOM05D005184 ORTHO05D006222 5.0e-38 161.8 133 62.4
unitig_749.g13268 Utricularia gibba HOM05D005184 ORTHO05D006222 4.3e-37 158.7 186 44.1
SGA_v2.0_scaffold166G38348 Striga asiatica HOM05D005184 ORTHO05D006222 9.5e-37 157.5 146 58.2
ATR1149G050 Amborella trichopoda HOM05D005184 ORTHO05D006222 2.1e-36 156.4 125 62.4
RcHm_v2.0_Chr3g0467191 Rosa chinensis HOM05D005184 ORTHO05D006222 6.1e-36 154.8 168 48.8
Lj3A1049G57 Lonicera japonica HOM05D005184 ORTHO05D006222 1.8e-35 153.3 127 60.6
THA.LOC104808902 Tarenaya hassleriana HOM05D005184 ORTHO05D006222 2.6e-34 149.4 176 43.8
RcHm_v2.0_Chr4g0444381 Rosa chinensis HOM05D005184 ORTHO05D006222 7.5e-34 147.9 109 67.0
Hund05960 Selenicereus undatus HOM05D005184 ORTHO05D006222 9.8e-34 147.5 120 64.2
AL1G37810 Arabidopsis lyrata HOM05D005184 ORTHO05D006222 3.7e-33 145.6 172 44.8
Carub.0001s2347 Capsella rubella HOM05D005184 ORTHO05D006222 3.7e-33 145.6 172 44.8
AT1G24050 Arabidopsis thaliana HOM05D005184 ORTHO05D006222 4.9e-33 145.2 172 44.8
THA.LOC104822060 Tarenaya hassleriana HOM05D005184 ORTHO05D006222 4.9e-33 145.2 173 43.4
Aa31LG7G7840 Aethionema arabicum HOM05D005184 ORTHO05D006222 6.4e-33 144.8 172 44.8
RcHm_v2.0_Chr1g0347741 Rosa chinensis HOM05D005184 ORTHO05D006222 1.9e-32 143.3 146 48.6
Sp1g21380 Schrenkiella parvula HOM05D005184 ORTHO05D006222 2.7e-31 139.4 172 43.6
BcaC05g26302 Brassica carinata HOM05D005184 ORTHO05D006222 7.8e-31 137.9 175 43.4
BraA07t29118Z Brassica rapa HOM05D005184 ORTHO05D006222 3.9e-30 135.6 170 42.9
BolC5t31020H Brassica oleracea HOM05D005184 ORTHO05D006222 1.9e-29 133.3 176 43.2
BcaB07g32379 Brassica carinata HOM05D005184 ORTHO05D006222 2.5e-29 132.9 172 44.2
C07p20080 Brassica napus HOM05D005184 ORTHO05D006222 2.5e-29 132.9 169 42.6
BolC7t42528H Brassica oleracea HOM05D005184 ORTHO05D006222 2.5e-29 132.9 169 42.6
BraA09t39575Z Brassica rapa HOM05D005184 ORTHO05D006222 7.3e-29 131.3 176 43.2
Thhalv10009785m.g Eutrema salsugineum HOM05D005184 ORTHO05D006222 9.5e-29 131.0 167 43.1
RcHm_v2.0_Chr7g0224821 Rosa chinensis HOM05D005184 ORTHO05D006222 1.2e-28 130.6 123 52.8
Nitab4.5_0000031g0060 Nicotiana tabacum HOM05D005184 ORTHO05D006222 3.6e-28 129.0 192 42.2
Carub.0002s1692 Capsella rubella HOM05D005184 ORTHO05D006222 8.0e-28 127.9 172 41.9
Sed0020204 Sechium edule HOM05D005184 ORTHO05D006222 8.0e-28 127.9 120 55.0
RcHm_v2.0_Chr2g0143691 Rosa chinensis HOM05D005184 ORTHO05D006222 5.2e-27 125.2 139 44.6
CSS0000441 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 6.8e-27 124.8 124 53.2
A09p40800 Brassica napus HOM05D001690 ORTHO05D009096 1.5e-26 123.6 168 42.3
Phvul.003G054101 Phaseolus vulgaris HOM05D005184 ORTHO05D006222 2.0e-26 123.2 115 56.5
C05p23190 Brassica napus HOM05D001690 ORTHO05D009096 2.6e-26 122.9 168 41.7
AL2G29520 Arabidopsis lyrata HOM05D005184 ORTHO05D006222 2.2e-25 119.8 167 40.7
EL10Ac6g13619 Beta vulgaris HOM05D005184 ORTHO05D006222 6.4e-25 118.2 157 47.1
Cre10.g421850 Chlamydomonas reinhardtii HOM05D005184 ORTHO05D006222 6.4e-25 118.2 162 37.7
AT1G70220 Arabidopsis thaliana HOM05D005184 ORTHO05D006222 1.2e-23 114.0 173 38.2
MCO16G256 Micromonas commoda HOM05D005184 ORTHO05D006222 4.6e-23 112.1 152 41.4
BcaB03g14122 Brassica carinata HOM05D005184 ORTHO05D006222 2.3e-22 109.8 117 47.9
Duzib248G0500 Durio zibethinus HOM05D005184 ORTHO05D006222 2.3e-22 109.8 135 44.4
BraA02t06699Z Brassica rapa HOM05D005184 ORTHO05D006222 3.9e-22 109.0 172 36.0
CARHR063340 Cardamine hirsuta HOM05D005184 ORTHO05D006222 6.6e-22 108.2 170 37.6
Prupe.1G258500 Prunus persica HOM05D005184 ORTHO05D006222 1.5e-21 107.1 124 47.6
A02p16400 Brassica napus HOM05D005184 ORTHO05D006222 5.6e-21 105.1 191 33.5
Sp5g25350 Schrenkiella parvula HOM05D005184 ORTHO05D006222 1.2e-20 104.0 175 33.7
CARHR024350 Cardamine hirsuta HOM05D005184 ORTHO05D006222 2.8e-20 102.8 137 41.6
Thhalv10019170m.g Eutrema salsugineum HOM05D005184 ORTHO05D006222 4.7e-20 102.1 183 36.1
BcaC03g15168 Brassica carinata HOM05D005184 ORTHO05D006222 3.1e-19 99.4 171 36.3
C02p27410 Brassica napus HOM05D005184 ORTHO05D006222 1.2e-18 97.4 171 35.7
BolC2t08801H Brassica oleracea HOM05D005184 ORTHO05D006222 1.5e-18 97.1 171 35.7
Cc02_g24860 Coffea canephora HOM05D005184 ORTHO05D006222 2.9e-17 92.8 119 42.9
vmacro22617 Vaccinium macrocarpon HOM05D005184 ORTHO05D006222 2.1e-15 86.7 53 77.4
BcaC06g35075 Brassica carinata HOM05D005184 ORTHO05D006222 2.7e-15 86.3 138 37.7
Solyc04g025670.4 Solanum lycopersicum HOM05D005184 ORTHO05D006222 1.3e-14 84.0 52 76.9
Nitab4.5_0000925g0110 Nicotiana tabacum HOM05D005184 ORTHO05D006222 3.9e-14 82.4 54 72.2
Prupe.1G258600 Prunus persica HOM05D005184 ORTHO05D006222 6.6e-14 81.6 53 75.5
vmacro22616 Vaccinium macrocarpon HOM05D005184 ORTHO05D006222 1.5e-13 80.5 83 54.2
QL03p062286 Quercus lobata HOM05D005184 ORTHO05D006222 1.2e-12 77.4 60 63.3
CSS0046251 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 1.6e-12 77.0 53 67.9
BcaB05g24540 Brassica carinata HOM05D005184 ORTHO05D006222 4.7e-12 75.5 121 36.4
PRCOL_00005775 Prasinoderma coloniale HOM05D005184 ORTHO05D006222 3.1e-11 72.8 97 40.2
Cc00_g31660 Coffea canephora HOM05D005184 ORTHO05D006222 1.2e-10 70.9 129 36.4
BcaB02g09680 Brassica carinata HOM05D000630 ORTHO05D014858 5.8e-10 68.6 124 37.1
A07p13470 Brassica napus HOM05D005184 ORTHO05D006222 8.4e-09 64.7 162 26.5
Peaxi162Scf00792g00021 Petunia axillaris HOM05D005184 ORTHO05D006222 8.4e-09 64.7 41 73.2


User provided reference genes

Program Settings