Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c1_7290 Physcomitrium patens HOM05D004038 ORTHO05D004619 0.0e+00 1152.5 567 100.0
Pp3c1_34260 Physcomitrium patens HOM05D004038 ORTHO05D004619 5.1e-145 518.8 530 50.6
Pp3c14_7650 Physcomitrium patens HOM05D004038 ORTHO05D004619 5.8e-125 452.2 496 47.6
Pp3c10_11360 Physcomitrium patens HOM05D004038 ORTHO05D004619 4.6e-122 442.6 494 48.6
SMO266G0055 Selaginella moellendorffii HOM05D004038 ORTHO05D004619 3.3e-19 100.9 222 32.9
AT2G44090 Arabidopsis thaliana HOM05D004038 ORTHO05D004619 7.4e-19 99.8 185 37.3
Aa31LG10G14160 Aethionema arabicum HOM05D004038 ORTHO05D004619 1.6e-18 98.6 205 33.7
arahy.Tifrunner.gnm1.ann1.7FI9ND Arachis hypogaea HOM05D004038 ORTHO05D004619 2.8e-18 97.8 175 37.7
arahy.Tifrunner.gnm1.ann1.BTB9WU Arachis hypogaea HOM05D004038 ORTHO05D004619 2.8e-18 97.8 175 37.7
CDE08G0097 Ceratophyllum demersum HOM05D004038 ORTHO05D004619 2.8e-18 97.8 509 24.8
Eucgr.A00409 Eucalyptus grandis HOM05D004038 ORTHO05D004619 2.8e-18 97.8 217 34.1
MSTRG.24543 Avicennia marina HOM05D004038 ORTHO05D004619 3.6e-18 97.4 217 33.6
Cc03_g15910 Coffea canephora HOM05D004038 ORTHO05D004619 3.6e-18 97.4 214 36.4
EL10Ac3g06184 Beta vulgaris HOM05D004038 ORTHO05D004619 4.8e-18 97.1 229 33.6
Ah.07g203340 Amaranthus hybridus HOM05D004038 ORTHO05D004619 6.2e-18 96.7 233 33.5
Carub.0005s2665 Capsella rubella HOM05D004038 ORTHO05D004619 8.1e-18 96.3 186 34.4
CARHR139240 Cardamine hirsuta HOM05D004038 ORTHO05D004619 8.1e-18 96.3 185 35.7
COL.COLO4_14407 Corchorus olitorius HOM05D004038 ORTHO05D004619 8.1e-18 96.3 196 37.2
Medtr4g134960 Medicago truncatula HOM05D004038 ORTHO05D004619 8.1e-18 96.3 187 36.9
Actinidia18385 Actinidia chinensis HOM05D004038 ORTHO05D004619 1.1e-17 95.9 195 35.9
MSTRG.22058 Avicennia marina HOM05D004038 ORTHO05D004619 1.1e-17 95.9 188 35.1
HPP92_004656 Vanilla planifolia HOM05D004038 ORTHO05D004619 1.1e-17 95.9 221 32.1
Ciclev10019310m.g Citrus clementina HOM05D004038 ORTHO05D004619 1.8e-17 95.1 226 33.6
Mapoly0053s0086 Marchantia polymorpha HOM05D004038 ORTHO05D004619 1.8e-17 95.1 214 34.6
AT3G59910 Arabidopsis thaliana HOM05D004038 ORTHO05D004619 2.4e-17 94.7 186 33.9
Dinv24739 Davidia involucrata HOM05D004038 ORTHO05D004619 2.4e-17 94.7 195 34.9
Duzib093G1419 Durio zibethinus HOM05D004038 ORTHO05D004619 2.4e-17 94.7 194 35.1
Oeu061885.1 Olea europaea HOM05D004038 ORTHO05D004619 2.4e-17 94.7 186 34.9
Sp4g26170 Schrenkiella parvula HOM05D004038 ORTHO05D004619 2.4e-17 94.7 185 36.2
Hund12302 Selenicereus undatus HOM05D004038 ORTHO05D004619 2.4e-17 94.7 190 34.7
AL5G42070 Arabidopsis lyrata HOM05D004038 ORTHO05D004619 3.1e-17 94.4 186 33.3
BcaC07g40397 Brassica carinata HOM05D004038 ORTHO05D004619 3.1e-17 94.4 186 34.9
MBI10_g31866_MAGBIO Magnolia biondii HOM05D004038 ORTHO05D004619 3.1e-17 94.4 185 35.7
Pp3c24_10000 Physcomitrium patens HOM05D004038 ORTHO05D004619 3.1e-17 94.4 214 33.2
vmacro00732 Vaccinium macrocarpon HOM05D004038 ORTHO05D004619 3.1e-17 94.4 201 34.8
Thhalv10001361m.g Eutrema salsugineum HOM05D004038 ORTHO05D004619 4.0e-17 94.0 185 35.7
Pp3c23_11480 Physcomitrium patens HOM05D004038 ORTHO05D004619 4.0e-17 94.0 214 32.7
Aa31LG1G25740 Aethionema arabicum HOM05D004038 ORTHO05D004619 5.3e-17 93.6 185 35.7
Ah.13g073130 Amaranthus hybridus HOM05D004038 ORTHO05D004619 5.3e-17 93.6 196 35.2
A09p52260 Brassica napus HOM05D004038 ORTHO05D004619 5.3e-17 93.6 211 32.2
BraA09t40655Z Brassica rapa HOM05D004038 ORTHO05D004619 5.3e-17 93.6 211 32.2
Cpa.g.sc9.239 Carica papaya HOM05D004038 ORTHO05D004619 5.3e-17 93.6 216 33.3
Duzib106G0840 Durio zibethinus HOM05D004038 ORTHO05D004619 5.3e-17 93.6 196 35.2
Rhsim09G0001600 Rhododendron simsii HOM05D004038 ORTHO05D004619 5.3e-17 93.6 189 35.4
AL4G42970 Arabidopsis lyrata HOM05D004038 ORTHO05D004619 6.9e-17 93.2 185 35.7
Potri.017G001300 Populus trichocarpa HOM05D004038 ORTHO05D004619 6.9e-17 93.2 191 34.6
Lalb_Chr13g0304471 Lupinus albus HOM05D004038 ORTHO05D004619 9.0e-17 92.8 185 35.1
Oeu050303.2 Olea europaea HOM05D004038 ORTHO05D004619 9.0e-17 92.8 212 33.0
SEGI_02142 Sequoiadendron giganteum HOM05D004038 ORTHO05D004619 9.0e-17 92.8 215 34.0
Migut.N03013 Erythranthe guttata HOM05D004038 ORTHO05D004619 1.2e-16 92.4 193 35.8
Glyma.17G000500 Glycine max HOM05D004038 ORTHO05D004619 1.2e-16 92.4 185 35.7
Gohir.A13G079100 Gossypium hirsutum HOM05D004038 ORTHO05D004619 1.2e-16 92.4 193 35.8
Gohir.D13G095500 Gossypium hirsutum HOM05D004038 ORTHO05D004619 1.2e-16 92.4 193 35.8
MD01G1124800 Malus domestica HOM05D004038 ORTHO05D004619 1.2e-16 92.4 191 37.2
Phvul.003G074400 Phaseolus vulgaris HOM05D004038 ORTHO05D004619 1.2e-16 92.4 185 35.7
Psat4g001200 Pisum sativum HOM05D004038 ORTHO05D004619 1.2e-16 92.4 187 35.8
Ca_13541_v3 Cicer arietinum L. HOM05D004038 ORTHO05D004619 1.5e-16 92.0 187 35.3
Migut.O00491 Erythranthe guttata HOM05D004038 ORTHO05D004619 1.5e-16 92.0 189 35.4
Pp3c20_17330 Physcomitrium patens HOM05D004038 ORTHO05D004619 1.5e-16 92.0 214 32.2
Thecc.05G000500 Theobroma cacao HOM05D004038 ORTHO05D004619 1.5e-16 92.0 196 35.7
BcaC02g12341 Brassica carinata HOM05D004038 ORTHO05D004619 2.0e-16 91.7 185 35.7
C08p34910 Brassica napus HOM05D004038 ORTHO05D004619 2.0e-16 91.7 186 33.9
BolC4t22128H Brassica oleracea HOM05D004038 ORTHO05D004619 2.0e-16 91.7 185 35.7
CDE09G0082 Ceratophyllum demersum HOM05D004038 ORTHO05D004619 2.0e-16 91.7 187 33.7
Lj6A289T17 Lonicera japonica HOM05D004038 ORTHO05D004619 2.0e-16 91.7 221 32.1
Pp3c23_5610 Physcomitrium patens HOM05D004038 ORTHO05D004619 2.0e-16 91.7 214 32.2
SalBow6G2055 Salvia bowleyana HOM05D004038 ORTHO05D004619 2.0e-16 91.7 186 34.4
VMungo1215G2173 Vigna mungo HOM05D004038 ORTHO05D004619 2.0e-16 91.7 185 35.7
AUR62002499 Chenopodium quinoa HOM05D004038 ORTHO05D004619 3.4e-16 90.9 229 33.2
AUR62023688 Chenopodium quinoa HOM05D004038 ORTHO05D004619 3.4e-16 90.9 229 33.2
Glyma.07G273900 Glycine max HOM05D004038 ORTHO05D004619 3.4e-16 90.9 181 35.4
Gorai.001G247600 Gossypium raimondii HOM05D004038 ORTHO05D004619 3.4e-16 90.9 193 35.2
C04p04970 Brassica napus HOM05D004038 ORTHO05D004619 4.5e-16 90.5 185 35.1
BraA05t19406Z Brassica rapa HOM05D004038 ORTHO05D004619 4.5e-16 90.5 185 35.1
PGR042G1685 Punica granatum HOM05D004038 ORTHO05D004619 4.5e-16 90.5 215 31.6
Sc19g0002460 Simmondsia chinensis HOM05D004038 ORTHO05D004619 4.5e-16 90.5 227 32.6
Zm00001eb244150 Zea mays HOM05D004038 ORTHO05D004619 4.5e-16 90.5 183 38.8
BcaC02g07135 Brassica carinata HOM05D004038 ORTHO05D004619 5.8e-16 90.1 203 34.0
A05p04210 Brassica napus HOM05D004038 ORTHO05D004619 5.8e-16 90.1 185 35.1
Cc03_g15890 Coffea canephora HOM05D004038 ORTHO05D004619 5.8e-16 90.1 197 36.0
Lj4g0009662 Lotus japonicus HOM05D004038 ORTHO05D004619 5.8e-16 90.1 185 35.1
Atru.chr3.1959 Acer truncatum HOM05D004038 ORTHO05D004619 7.6e-16 89.7 228 32.9
AagrBONN_evm.TU.Sc2ySwM_344.984 Anthoceros agrestis HOM05D004038 ORTHO05D004619 7.6e-16 89.7 246 30.5
Thhalv10005846m.g Eutrema salsugineum HOM05D004038 ORTHO05D004619 9.9e-16 89.4 218 30.7
CARHR170240 Cardamine hirsuta HOM05D004038 ORTHO05D004619 1.3e-15 89.0 187 33.7
Dinv33253 Davidia involucrata HOM05D004038 ORTHO05D004619 1.3e-15 89.0 196 34.2
MD02G1000800 Malus domestica HOM05D004038 ORTHO05D004619 1.3e-15 89.0 195 34.4
Os11g0246900 Oryza sativa ssp. japonica HOM05D004038 ORTHO05D004619 1.3e-15 89.0 197 31.5
THA.LOC104802352 Tarenaya hassleriana HOM05D004038 ORTHO05D004619 1.3e-15 89.0 213 31.0
TAR365G0572 Trochodendron aralioides HOM05D004038 ORTHO05D004619 1.3e-15 89.0 188 34.0
TAR636G2134 Trochodendron aralioides HOM05D004038 ORTHO05D004619 1.3e-15 89.0 190 34.2
GSVIVG01038267001 Vitis vinifera HOM05D004038 ORTHO05D004619 1.3e-15 89.0 196 34.7
BcaB02g08921 Brassica carinata HOM05D004038 ORTHO05D004619 1.7e-15 88.6 185 34.1
BcaC07g40545 Brassica carinata HOM05D004038 ORTHO05D004619 1.7e-15 88.6 186 33.3
BolC8t51093H Brassica oleracea HOM05D004038 ORTHO05D004619 1.7e-15 88.6 186 33.3
DCAR_023794 Daucus carota HOM05D004038 ORTHO05D004619 1.7e-15 88.6 219 34.2
FvH4_1g00080 Fragaria vesca HOM05D004038 ORTHO05D004619 1.7e-15 88.6 216 33.3
FAN28G1790 Fragaria x ananassa HOM05D004038 ORTHO05D004619 1.7e-15 88.6 216 33.3
Sp5g03260 Schrenkiella parvula HOM05D004038 ORTHO05D004619 1.7e-15 88.6 186 33.3
CANSAT56G2502 Cannabis sativa HOM05D004038 ORTHO05D004619 2.9e-15 87.8 510 23.5
Nitab4.5_0008814g0010 Nicotiana tabacum HOM05D004038 ORTHO05D004619 2.9e-15 87.8 186 33.9
Nitab4.5_0012258g0010 Nicotiana tabacum HOM05D004038 ORTHO05D004619 2.9e-15 87.8 185 34.1
Os02g0562400 Oryza sativa ssp. japonica HOM05D004038 ORTHO05D004619 2.9e-15 87.8 153 41.8
TWI63G0698 Tripterygium wilfordii HOM05D004038 ORTHO05D004619 2.9e-15 87.8 188 35.6
ATR0743G108 Amborella trichopoda HOM05D004038 ORTHO05D004619 3.8e-15 87.4 194 36.1
RcHm_v2.0_Chr2g0084351 Rosa chinensis HOM05D004038 ORTHO05D004619 3.8e-15 87.4 219 32.9
ClCG08G010220 Citrullus lanatus HOM05D004038 ORTHO05D004619 4.9e-15 87.0 226 29.2
Haze_11105 Corylus avellana HOM05D004038 ORTHO05D004619 4.9e-15 87.0 194 34.0
Prupe.7G271200 Prunus persica HOM05D004038 ORTHO05D004619 4.9e-15 87.0 188 33.0
Sed0003085 Sechium edule HOM05D004038 ORTHO05D004619 4.9e-15 87.0 226 28.8
HPP92_001964 Vanilla planifolia HOM05D004038 ORTHO05D004619 4.9e-15 87.0 225 31.1
Manes.01G009451 Manihot esculenta HOM05D004038 ORTHO05D004619 6.4e-15 86.7 191 34.0
A04p33200 Brassica napus HOM05D000190 ORTHO05D000113 8.4e-15 86.3 119 41.2
Hma1.2p1_0513F.1_g169760 Hydrangea macrophylla HOM05D004038 ORTHO05D004619 8.4e-15 86.3 188 34.6
MBI07_g27881_MAGBIO Magnolia biondii HOM05D004038 ORTHO05D004619 8.4e-15 86.3 195 34.4
MD15G1142000 Malus domestica HOM05D004038 ORTHO05D004619 8.4e-15 86.3 195 33.3
Nitab4.5_0000219g0020 Nicotiana tabacum HOM05D004038 ORTHO05D004619 1.1e-14 85.9 187 33.2
Nitab4.5_0000348g0080 Nicotiana tabacum HOM05D004038 ORTHO05D004619 1.1e-14 85.9 187 33.7
BolC4t28590H Brassica oleracea HOM05D000190 ORTHO05D000113 1.4e-14 85.5 119 42.0
CAN.G68.3 Capsicum annuum HOM05D004038 ORTHO05D004619 1.4e-14 85.5 189 33.9
QL10p064923 Quercus lobata HOM05D004038 ORTHO05D004619 1.4e-14 85.5 194 33.5
SMO361G0247 Selaginella moellendorffii HOM05D004038 ORTHO05D004619 1.4e-14 85.5 214 30.8
C04p70890 Brassica napus HOM05D000190 ORTHO05D000113 1.9e-14 85.1 120 40.8
FAN23G2340 Fragaria x ananassa HOM05D004038 ORTHO05D004619 1.9e-14 85.1 214 33.2
FAN26G0143 Fragaria x ananassa HOM05D004038 ORTHO05D004619 1.9e-14 85.1 214 33.2
Peaxi162Scf01205g00162 Petunia axillaris HOM05D004038 ORTHO05D004619 2.4e-14 84.7 183 33.3
Potri.007G146500 Populus trichocarpa HOM05D004038 ORTHO05D004619 2.4e-14 84.7 194 33.0
Sabra07G0114900 Salix brachista HOM05D004038 ORTHO05D004619 2.4e-14 84.7 194 32.0
Zm00001eb168270 Zea mays HOM05D004038 ORTHO05D004619 2.4e-14 84.7 187 32.6
MELO3C011438.2 Cucumis melo HOM05D004038 ORTHO05D004619 3.2e-14 84.3 226 29.2
ATR0225G045 Amborella trichopoda HOM05D004038 ORTHO05D004619 4.2e-14 84.0 217 33.2
SalBow3G0041 Salvia bowleyana HOM05D004038 ORTHO05D004619 4.2e-14 84.0 217 30.0
BraA04t18779Z Brassica rapa HOM05D000190 ORTHO05D000113 5.5e-14 83.6 119 40.3
Cfa008534 Carpinus fangiana HOM05D004038 ORTHO05D004619 7.1e-14 83.2 194 33.5
Solyc08g015780.3 Solanum lycopersicum HOM05D004038 ORTHO05D004619 7.1e-14 83.2 185 31.4
Sopen08g005950 Solanum pennellii HOM05D004038 ORTHO05D004619 7.1e-14 83.2 185 31.4
Migut.G00797 Erythranthe guttata HOM05D004038 ORTHO05D004619 9.3e-14 82.8 217 30.4
CsaV3_6G032420 Cucumis sativus L. HOM05D004038 ORTHO05D004619 1.2e-13 82.4 226 28.8
CiPaw.02G125700 Carya illinoinensis HOM05D004038 ORTHO05D004619 1.6e-13 82.0 194 32.5
HanXRQChr01g0023591 Helianthus annuus HOM05D004038 ORTHO05D004619 1.6e-13 82.0 185 33.0
PGSC0003DMG400013719 Solanum tuberosum HOM05D004038 ORTHO05D004619 1.6e-13 82.0 185 31.4
CiPaw.01G203200 Carya illinoinensis HOM05D004038 ORTHO05D004619 2.1e-13 81.6 188 34.0
CBR_g40501 Chara braunii HOM05D004038 ORTHO05D004619 2.1e-13 81.6 142 32.4
Sopen12g008310 Solanum pennellii HOM05D004038 ORTHO05D004619 2.7e-13 81.3 186 33.3
Peaxi162Scf00057g00179 Petunia axillaris HOM05D004038 ORTHO05D004619 6.0e-13 80.1 194 34.0
Aqoxy2G04186 Aquilegia oxysepala HOM05D004038 ORTHO05D004619 7.9e-13 79.7 217 31.3
Solyc12g017540.2 Solanum lycopersicum HOM05D004038 ORTHO05D004619 7.9e-13 79.7 186 32.8
CDE02G2909 Ceratophyllum demersum HOM05D004038 ORTHO05D004619 1.0e-12 79.3 92 45.7
PSO357G0424 Papaver somniferum HOM05D004038 ORTHO05D004619 1.3e-12 79.0 193 32.6
PGSC0003DMG402006465 Solanum tuberosum HOM05D004038 ORTHO05D004619 3.9e-12 77.4 188 32.4
PSO170G2946 Papaver somniferum HOM05D004038 ORTHO05D004619 5.1e-12 77.0 193 32.6
unitig_27.g25138 Utricularia gibba HOM05D004038 ORTHO05D004619 5.1e-12 77.0 203 30.5
SGA_v2.0_scaffold19G08904 Striga asiatica HOM05D004038 ORTHO05D004619 9.0e-09 66.2 186 31.2
Lsat_1_v5_gn_1_77161 Lactuca sativa HOM05D004038 ORTHO05D004619 2.2e-07 61.6 480 22.3
Rhsim09G0010000 Rhododendron simsii HOM05D004038 ORTHO05D004619 4.2e-06 57.4 237 31.6


User provided reference genes

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