Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c1_6540 Physcomitrium patens HOM05D007699 ORTHO05D009796 2.4e-25 117.9 53 100.0
Pp3s677_20 Physcomitrium patens HOM05D007699 ORTHO05D009796 1.5e-14 82.0 43 86.0
EL10Ac6g13349 Beta vulgaris HOM05D007699 ORTHO05D009796 7.4e-14 79.7 41 90.2
EL10Ac6g13685 Beta vulgaris HOM05D007699 ORTHO05D009796 1.3e-13 79.0 45 80.0
EL10Ac6g13624 Beta vulgaris HOM05D007699 ORTHO05D009796 1.6e-13 78.6 37 97.3
Ciclev10018283m.g Citrus clementina HOM05D007699 ORTHO05D009796 1.6e-13 78.6 37 97.3
Pp3c15_10810 Physcomitrium patens HOM05D007699 ORTHO05D009796 1.6e-13 78.6 44 86.4
Pp3c15_10813 Physcomitrium patens HOM05D007699 ORTHO05D009796 1.6e-13 78.6 44 86.4
Pp3c15_10820 Physcomitrium patens HOM05D007699 ORTHO05D009796 1.6e-13 78.6 44 86.4
Pp3c10_15080 Physcomitrium patens HOM05D007699 ORTHO05D009796 2.1e-13 78.2 49 77.6
Pp3c10_15084 Physcomitrium patens HOM05D007699 ORTHO05D009796 2.1e-13 78.2 49 77.6
Pp3s1006_30 Physcomitrium patens HOM05D007699 ORTHO05D009796 2.1e-13 78.2 49 77.6
Pp3s638_22 Physcomitrium patens HOM05D007699 ORTHO05D009796 2.1e-13 78.2 49 77.6
Pp3s677_10 Physcomitrium patens HOM05D007699 ORTHO05D009796 2.1e-13 78.2 49 77.6
Pp3s677_11 Physcomitrium patens HOM05D007699 ORTHO05D009796 2.1e-13 78.2 49 77.6
Prupe.7G080000 Prunus persica HOM05D007699 ORTHO05D009796 2.8e-13 77.8 46 82.6
Ah.10g036850 Amaranthus hybridus HOM05D007699 ORTHO05D009796 3.7e-13 77.4 35 100.0
EL10Ac6g13683 Beta vulgaris HOM05D007699 ORTHO05D009796 3.7e-13 77.4 35 100.0
GSVIVG01037330001 Vitis vinifera HOM05D007699 ORTHO05D009796 3.7e-13 77.4 35 100.0
arahy.Tifrunner.gnm1.ann1.3J1SD9 Arachis hypogaea HOM05D007699 ORTHO05D009796 8.1e-13 76.3 37 91.9
Prupe.7G069600 Prunus persica HOM05D007699 ORTHO05D009796 8.1e-13 76.3 44 81.8
Pp3c21_2000 Physcomitrium patens HOM05D007699 ORTHO05D009796 1.1e-12 75.9 51 72.5
Pp3c21_2022 Physcomitrium patens HOM05D007699 ORTHO05D009796 1.1e-12 75.9 51 72.5
EL10Ac6g13684 Beta vulgaris HOM05D007699 ORTHO05D009796 1.8e-12 75.1 34 100.0
SHI29091 Sapria himalayana HOM05D007699 ORTHO05D009796 1.8e-12 75.1 36 94.4
A05p18230 Brassica napus HOM05D007699 ORTHO05D009796 2.4e-12 74.7 44 79.5
Nitab4.5_0005352g0040 Nicotiana tabacum HOM05D007699 ORTHO05D009796 2.4e-12 74.7 39 87.2
Pp3c24_6960 Physcomitrium patens HOM05D007699 ORTHO05D009796 2.4e-12 74.7 41 85.4
Pp3c24_6961 Physcomitrium patens HOM05D007699 ORTHO05D009796 2.4e-12 74.7 41 85.4
Solyc12g056290.2 Solanum lycopersicum HOM05D007699 ORTHO05D009796 2.4e-12 74.7 35 97.1
TPR.G38695 Trifolium pratense HOM05D000020 ORTHO05D000543 2.4e-12 74.7 40 85.0
Medtr3g105890 Medicago truncatula HOM05D007699 ORTHO05D009796 4.0e-12 73.9 47 76.6
TPR.G12299 Trifolium pratense HOM05D007699 ORTHO05D009796 5.3e-12 73.6 37 89.2
Phvul.008G062500 Phaseolus vulgaris HOM05D007699 ORTHO05D009796 6.9e-12 73.2 38 89.5
QL03p053410 Quercus lobata HOM05D007699 ORTHO05D009796 6.9e-12 73.2 38 89.5
arahy.Tifrunner.gnm1.ann1.3C01L3 Arachis hypogaea HOM05D007699 ORTHO05D009796 9.0e-12 72.8 35 94.3
EL10Ac6g13623 Beta vulgaris HOM05D007699 ORTHO05D009796 9.0e-12 72.8 32 100.0
C03p91420 Brassica napus HOM05D007699 ORTHO05D009796 9.0e-12 72.8 35 94.3
Carub.0003s1340 Capsella rubella HOM05D007699 ORTHO05D009796 9.0e-12 72.8 35 94.3
CARHR088640 Cardamine hirsuta HOM05D007699 ORTHO05D009796 9.0e-12 72.8 35 94.3
CARHR185520 Cardamine hirsuta HOM05D007699 ORTHO05D009796 9.0e-12 72.8 35 94.3
Migut.J00839 Erythranthe guttata HOM05D007699 ORTHO05D009796 9.0e-12 72.8 35 94.3
FvH4_3g13700 Fragaria vesca HOM05D007699 ORTHO05D009796 9.0e-12 72.8 35 94.3
FAN08G2016 Fragaria x ananassa HOM05D007699 ORTHO05D009796 9.0e-12 72.8 35 94.3
FAN11G1327 Fragaria x ananassa HOM05D007699 ORTHO05D009796 9.0e-12 72.8 35 94.3
FAN11G3494 Fragaria x ananassa HOM05D007699 ORTHO05D009796 9.0e-12 72.8 35 94.3
FAN13G3199 Fragaria x ananassa HOM05D007699 ORTHO05D009796 9.0e-12 72.8 35 94.3
FAN18G1300 Fragaria x ananassa HOM05D005738 ORTHO05D007135 9.0e-12 72.8 35 94.3
FAN18G3749 Fragaria x ananassa HOM05D005738 ORTHO05D007135 9.0e-12 72.8 35 94.3
Hma1.2p1_0886F.1_g232660 Hydrangea macrophylla HOM05D007699 ORTHO05D009796 9.0e-12 72.8 35 94.3
Hma1.2p1_0886F.1_g232685 Hydrangea macrophylla HOM05D007699 ORTHO05D009796 9.0e-12 72.8 35 94.3
Manes.11G145650 Manihot esculenta HOM05D007699 ORTHO05D009796 9.0e-12 72.8 35 94.3
Mapoly0086s0020 Marchantia polymorpha HOM05D007699 ORTHO05D009796 9.0e-12 72.8 35 94.3
Medtr3g084270 Medicago truncatula HOM05D007699 ORTHO05D009796 9.0e-12 72.8 35 94.3
Nn7g36904 Nelumbo nucifera HOM05D007699 ORTHO05D009796 9.0e-12 72.8 32 100.0
Phvul.001G066900 Phaseolus vulgaris HOM05D007699 ORTHO05D009796 9.0e-12 72.8 35 94.3
Phvul.001G084100 Phaseolus vulgaris HOM05D007699 ORTHO05D009796 9.0e-12 72.8 35 94.3
Potri.011G103301 Populus trichocarpa HOM05D007699 ORTHO05D009796 9.0e-12 72.8 35 94.3
Potri.011G103401 Populus trichocarpa HOM05D007699 ORTHO05D009796 9.0e-12 72.8 35 94.3
Sopen12g028800 Solanum pennellii HOM05D007699 ORTHO05D009796 9.0e-12 72.8 35 94.3
Gohir.D06G068332 Gossypium hirsutum HOM05D007699 ORTHO05D009796 1.5e-11 72.0 37 86.5
TPR.G32688 Trifolium pratense HOM05D007699 ORTHO05D009796 2.0e-11 71.6 33 93.9
Mapoly0020s0143 Marchantia polymorpha HOM05D007699 ORTHO05D009796 2.6e-11 71.2 35 91.4
Phvul.001G066700 Phaseolus vulgaris HOM05D007699 ORTHO05D009796 3.4e-11 70.9 31 100.0
EL10Ac6g13625 Beta vulgaris HOM05D007699 ORTHO05D009796 4.5e-11 70.5 46 76.1
FAN08G0324 Fragaria x ananassa HOM05D007699 ORTHO05D009796 4.5e-11 70.5 34 94.1
Pp3c27_1930 Physcomitrium patens HOM05D007699 ORTHO05D009796 3.8e-10 67.4 39 76.9
Gorai.010G079800 Gossypium raimondii HOM05D007699 ORTHO05D009796 4.9e-10 67.0 39 79.5
Pp3c1_26810 Physcomitrium patens HOM05D007699 ORTHO05D009796 4.9e-10 67.0 31 96.8
Pp3c1_26830 Physcomitrium patens HOM05D007699 ORTHO05D009796 4.9e-10 67.0 31 96.8
Gorai.011G262200 Gossypium raimondii HOM05D007699 ORTHO05D009796 1.4e-09 65.5 35 88.6
Thecc.10G037500 Theobroma cacao HOM05D007699 ORTHO05D009796 2.4e-09 64.7 34 88.2
Pp3c24_16090 Physcomitrium patens HOM05D007699 ORTHO05D009796 3.2e-09 64.3 37 78.4
Pp3c24_16091 Physcomitrium patens HOM05D007699 ORTHO05D009796 3.2e-09 64.3 37 78.4
EL10Ac6g13621 Beta vulgaris HOM05D007699 ORTHO05D009796 4.2e-09 63.9 34 85.3
Phvul.001G090500 Phaseolus vulgaris HOM05D007699 ORTHO05D009796 5.5e-09 63.5 31 93.5
Medtr8g461450 Medicago truncatula HOM05D007699 ORTHO05D009796 7.1e-09 63.2 31 93.5
Potri.005G055534 Populus trichocarpa HOM05D007699 ORTHO05D009796 7.1e-09 63.2 31 93.5
Potri.005G055667 Populus trichocarpa HOM05D007699 ORTHO05D009796 7.1e-09 63.2 31 93.5
FAN18G1871 Fragaria x ananassa HOM05D007699 ORTHO05D009796 1.2e-08 62.4 33 87.9
CSS0021910 Camellia sinensis var. sinensis HOM05D007699 ORTHO05D009796 2.7e-08 61.2 35 82.9
Medtr3g108610 Medicago truncatula HOM05D007699 ORTHO05D009796 2.7e-08 61.2 27 100.0
CSS0023756 Camellia sinensis var. sinensis HOM05D007699 ORTHO05D009796 3.5e-08 60.8 30 93.3
Carub.0006s3371 Capsella rubella HOM05D007699 ORTHO05D009796 3.5e-08 60.8 30 93.3
FAN11G3758 Fragaria x ananassa HOM05D007699 ORTHO05D009796 3.5e-08 60.8 30 93.3
Glyma.19G099100 Glycine max HOM05D007699 ORTHO05D009796 3.5e-08 60.8 30 93.3
Gohir.A11G277350 Gossypium hirsutum HOM05D007699 ORTHO05D009796 3.5e-08 60.8 30 93.3
Gorai.011G262800 Gossypium raimondii HOM05D007699 ORTHO05D009796 3.5e-08 60.8 30 93.3
PGSC0003DMG400029597 Solanum tuberosum HOM05D000312 ORTHO05D000221 3.5e-08 60.8 30 93.3
Phvul.009G076400 Phaseolus vulgaris HOM05D007699 ORTHO05D009796 4.6e-08 60.5 33 84.8
arahy.Tifrunner.gnm1.ann1.C3EWW9 Arachis hypogaea HOM05D007699 ORTHO05D009796 1.8e-07 58.5 30 90.0
SHI28974 Sapria himalayana HOM05D007699 ORTHO05D009796 1.8e-07 58.5 35 77.1
Medtr2g101670 Medicago truncatula HOM05D007699 ORTHO05D009796 1.5e-06 55.5 34 73.5


User provided reference genes

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