Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c1_630 Physcomitrium patens HOM05D004572 ORTHO05D005425 3.9e-144 515.4 389 100.0
Mapoly0027s0115 Marchantia polymorpha HOM05D004572 ORTHO05D005425 3.4e-47 193.4 259 48.3
AagrBONN_evm.TU.Sc2ySwM_344.5065 Anthoceros agrestis HOM05D004572 ORTHO05D005425 4.3e-34 149.8 234 40.2
SEGI_34794 Sequoiadendron giganteum HOM05D004572 ORTHO05D005425 4.1e-29 133.3 252 36.5
MCO10G255 Micromonas commoda HOM05D004572 ORTHO05D005425 2.1e-25 120.9 243 37.9
SMO347G0031 Selaginella moellendorffii HOM05D004572 ORTHO05D005425 4.9e-22 109.8 167 40.7
Sc07g0008270 Simmondsia chinensis HOM05D004572 ORTHO05D005425 3.2e-21 107.1 208 37.0
Hund14323 Selenicereus undatus HOM05D004572 ORTHO05D005425 5.4e-21 106.3 209 37.8
ClCG07G002440 Citrullus lanatus HOM05D004572 ORTHO05D005425 1.2e-20 105.1 194 36.1
MBI12_g26901_MAGBIO Magnolia biondii HOM05D004572 ORTHO05D005425 2.7e-20 104.0 178 37.6
Haze_21257 Corylus avellana HOM05D004572 ORTHO05D005425 7.8e-20 102.4 212 33.0
ATR0579G060 Amborella trichopoda HOM05D004572 ORTHO05D005425 2.3e-19 100.9 254 31.9
Cfa021184 Carpinus fangiana HOM05D004572 ORTHO05D005425 2.3e-19 100.9 204 33.8
MELO3C022741.2 Cucumis melo HOM05D004572 ORTHO05D005425 3.9e-19 100.1 186 37.1
VMungo0720G3103 Vigna mungo HOM05D004572 ORTHO05D005425 5.0e-19 99.8 231 31.6
Manes.03G127200 Manihot esculenta HOM05D004572 ORTHO05D005425 6.6e-19 99.4 236 34.7
Cfa012902 Carpinus fangiana HOM05D004572 ORTHO05D005425 8.6e-19 99.0 235 31.1
Solyc08g074570.1 Solanum lycopersicum HOM05D004572 ORTHO05D005425 1.1e-18 98.6 187 36.9
COL.COLO4_28616 Corchorus olitorius HOM05D004572 ORTHO05D005425 1.5e-18 98.2 207 33.8
Cfa012912 Carpinus fangiana HOM05D004572 ORTHO05D005425 1.9e-18 97.8 252 31.3
Glyma.07G197900 Glycine max HOM05D004572 ORTHO05D005425 1.9e-18 97.8 155 38.7
CBR_g50444 Chara braunii HOM05D004572 ORTHO05D005425 2.5e-18 97.4 221 32.1
DCAR_017646 Daucus carota HOM05D004572 ORTHO05D005425 2.5e-18 97.4 228 34.2
vmacro05137 Vaccinium macrocarpon HOM05D004572 ORTHO05D005425 2.5e-18 97.4 197 36.5
Sopen08g023180 Solanum pennellii HOM05D004572 ORTHO05D005425 3.3e-18 97.1 224 34.4
TAR622G1008 Trochodendron aralioides HOM05D004924 ORTHO05D005896 3.3e-18 97.1 208 33.7
Phvul.003G026500 Phaseolus vulgaris HOM05D004572 ORTHO05D005425 4.3e-18 96.7 180 34.4
THA.LOC104815806 Tarenaya hassleriana HOM05D004572 ORTHO05D005425 4.3e-18 96.7 237 32.9
Cc04_g13460 Coffea canephora HOM05D004572 ORTHO05D005425 5.6e-18 96.3 236 32.2
Sed0022149 Sechium edule HOM05D004572 ORTHO05D005425 5.6e-18 96.3 229 31.9
PSO541G6108 Papaver somniferum HOM05D004572 ORTHO05D005425 7.3e-18 95.9 236 33.1
Manes.03G127100 Manihot esculenta HOM05D004572 ORTHO05D005425 9.5e-18 95.5 238 33.2
Oeu028098.1 Olea europaea HOM05D004572 ORTHO05D005425 9.5e-18 95.5 173 35.8
AagrBONN_evm.TU.Sc2ySwM_344.715 Anthoceros agrestis HOM05D004572 ORTHO05D005425 1.2e-17 95.1 78 61.5
PSO675G6986 Papaver somniferum HOM05D004572 ORTHO05D005425 1.2e-17 95.1 239 32.6
PGSC0003DMG400029573 Solanum tuberosum HOM05D004572 ORTHO05D005425 1.2e-17 95.1 224 34.4
Cpa.g.sc21.98 Carica papaya HOM05D004572 ORTHO05D005425 1.6e-17 94.7 232 32.3
MSTRG.11833 Avicennia marina HOM05D004572 ORTHO05D005425 2.1e-17 94.4 206 32.5
Duzib268G1853 Durio zibethinus HOM05D004572 ORTHO05D005425 2.1e-17 94.4 240 32.5
Gohir.D05G255680 Gossypium hirsutum HOM05D004572 ORTHO05D005425 2.1e-17 94.4 206 32.0
Gorai.009G267300 Gossypium raimondii HOM05D004572 ORTHO05D005425 2.1e-17 94.4 206 32.0
TAR629G0838 Trochodendron aralioides HOM05D004572 ORTHO05D005425 2.1e-17 94.4 211 33.6
CsaV3_3G030260 Cucumis sativus L. HOM05D004572 ORTHO05D005425 2.8e-17 94.0 238 32.8
Migut.A00508 Erythranthe guttata HOM05D004572 ORTHO05D005425 2.8e-17 94.0 211 33.2
TWI32G1304 Tripterygium wilfordii HOM05D004572 ORTHO05D005425 2.8e-17 94.0 243 28.8
Ah.08g210120 Amaranthus hybridus HOM05D004572 ORTHO05D005425 3.6e-17 93.6 229 36.2
Nn5g27612 Nelumbo nucifera HOM05D004572 ORTHO05D005425 3.6e-17 93.6 223 32.3
Lj2g0021533 Lotus japonicus HOM05D004572 ORTHO05D005425 6.2e-17 92.8 181 34.8
Thecc.04G269400 Theobroma cacao HOM05D004572 ORTHO05D005425 6.2e-17 92.8 226 32.3
Peaxi162Scf00445g00102 Petunia axillaris HOM05D004572 ORTHO05D005425 1.1e-16 92.0 249 29.3
QL93p0146_0040 Quercus lobata HOM05D004572 ORTHO05D005425 1.4e-16 91.7 211 32.2
CARHR032960 Cardamine hirsuta HOM05D004572 ORTHO05D005425 1.8e-16 91.3 219 32.0
Gohir.A05G253900 Gossypium hirsutum HOM05D004572 ORTHO05D005425 1.8e-16 91.3 207 32.4
Duzib177G0040 Durio zibethinus HOM05D004572 ORTHO05D005425 2.3e-16 90.9 200 32.0
Cc04_g13510 Coffea canephora HOM05D004572 ORTHO05D005425 5.2e-16 89.7 236 32.2
Thhalv10007601m.g Eutrema salsugineum HOM05D004572 ORTHO05D005425 5.2e-16 89.7 199 31.2
BcaB03g13695 Brassica carinata HOM05D004572 ORTHO05D005425 6.8e-16 89.4 199 31.7
BcaC05g27801 Brassica carinata HOM05D004572 ORTHO05D005425 6.8e-16 89.4 197 29.9
C05p37990 Brassica napus HOM05D004572 ORTHO05D005425 6.8e-16 89.4 197 29.9
BolC5t32530H Brassica oleracea HOM05D004572 ORTHO05D005425 6.8e-16 89.4 197 28.9
AUR62019030 Chenopodium quinoa HOM05D004572 ORTHO05D005425 8.9e-16 89.0 177 37.9
MD11G1222200 Malus domestica HOM05D004572 ORTHO05D005425 8.9e-16 89.0 177 34.5
Nitab4.5_0001131g0030 Nicotiana tabacum HOM05D004572 ORTHO05D005425 8.9e-16 89.0 199 35.2
AUR62008525 Chenopodium quinoa HOM05D004572 ORTHO05D005425 1.2e-15 88.6 179 34.6
DCAR_023418 Daucus carota HOM05D004572 ORTHO05D005425 1.2e-15 88.6 223 32.7
MD03G1208000 Malus domestica HOM05D004572 ORTHO05D005425 1.2e-15 88.6 176 34.1
SalBow4G0115 Salvia bowleyana HOM05D004572 ORTHO05D005425 1.2e-15 88.6 211 31.3
AL1G47900 Arabidopsis lyrata HOM05D004572 ORTHO05D005425 1.5e-15 88.2 217 33.6
Carub.0001s3171 Capsella rubella HOM05D004572 ORTHO05D005425 1.5e-15 88.2 218 32.1
BraA05t21310Z Brassica rapa HOM05D004572 ORTHO05D005425 2.0e-15 87.8 198 29.8
CBR_g2939 Chara braunii HOM05D007240 ORTHO05D003552 2.0e-15 87.8 220 30.0
Dinv09440 Davidia involucrata HOM05D004572 ORTHO05D005425 2.0e-15 87.8 218 32.1
Sp1g28990 Schrenkiella parvula HOM05D004572 ORTHO05D005425 2.0e-15 87.8 202 31.2
Psat6g099680 Pisum sativum HOM05D004572 ORTHO05D005425 3.4e-15 87.0 190 34.7
PRCOL_00000575 Prasinoderma coloniale HOM05D004572 ORTHO05D005425 3.4e-15 87.0 217 32.7
Prupe.4G208800 Prunus persica HOM05D004572 ORTHO05D005425 3.4e-15 87.0 165 36.4
AT1G33520 Arabidopsis thaliana HOM05D004572 ORTHO05D005425 4.4e-15 86.7 217 31.3
Phvul.003G004000 Phaseolus vulgaris HOM05D004572 ORTHO05D005425 4.4e-15 86.7 211 33.2
Medtr1g038340 Medicago truncatula HOM05D004572 ORTHO05D005425 5.8e-15 86.3 163 36.8
Rhsim01G0089200 Rhododendron simsii HOM05D004572 ORTHO05D005425 5.8e-15 86.3 206 33.0
RcHm_v2.0_Chr5g0038051 Rosa chinensis HOM05D004572 ORTHO05D005425 7.5e-15 85.9 243 30.5
Cre06.g303500 Chlamydomonas reinhardtii HOM05D004572 ORTHO05D005425 1.3e-14 85.1 89 48.3
Hma1.2p1_0127F.1_g059630 Hydrangea macrophylla HOM05D004572 ORTHO05D005425 1.3e-14 85.1 226 30.5
Aa31LG6G7980 Aethionema arabicum HOM05D004572 ORTHO05D005425 1.7e-14 84.7 242 28.5
CANSAT56G0747 Cannabis sativa HOM05D004572 ORTHO05D005425 2.2e-14 84.3 238 29.8
CANSAT56G1258 Cannabis sativa HOM05D004572 ORTHO05D005425 2.2e-14 84.3 243 29.6
Nitab4.5_0000907g0020 Nicotiana tabacum HOM05D004572 ORTHO05D005425 2.2e-14 84.3 228 31.1
QL06p018920 Quercus lobata HOM05D004572 ORTHO05D005425 2.2e-14 84.3 217 30.4
arahy.Tifrunner.gnm1.ann1.41JFP3 Arachis hypogaea HOM05D004572 ORTHO05D005425 2.9e-14 84.0 240 30.0
Glyma.20G002200 Glycine max HOM05D004572 ORTHO05D005425 3.7e-14 83.6 143 39.2
arahy.Tifrunner.gnm1.ann1.Z20ZUZ Arachis hypogaea HOM05D004572 ORTHO05D005425 4.9e-14 83.2 244 30.3
CBR_g54973 Chara braunii HOM05D004572 ORTHO05D005425 6.4e-14 82.8 220 30.5
FAN16G2201 Fragaria x ananassa HOM05D004572 ORTHO05D005425 6.4e-14 82.8 209 32.1
HanXRQChr04g0098951 Helianthus annuus HOM05D004572 ORTHO05D005425 6.4e-14 82.8 238 27.7
Lalb_Chr20g0109201 Lupinus albus HOM05D004572 ORTHO05D005425 6.4e-14 82.8 235 29.4
Potri.001G129700 Populus trichocarpa HOM05D004572 ORTHO05D005425 6.4e-14 82.8 200 28.5
SGA_v2.0_scaffold27G11714 Striga asiatica HOM05D004572 ORTHO05D005425 8.3e-14 82.4 181 32.6
arahy.Tifrunner.gnm1.ann1.GWI8GZ Arachis hypogaea HOM05D004572 ORTHO05D005425 1.1e-13 82.0 244 29.9
FAN21G2024 Fragaria x ananassa HOM05D004572 ORTHO05D005425 1.1e-13 82.0 200 32.5
Aqoxy5G04375 Aquilegia oxysepala HOM05D004572 ORTHO05D005425 3.2e-13 80.5 220 29.5
ECA248G3611 Erigeron canadensis HOM05D004572 ORTHO05D005425 4.1e-13 80.1 211 26.5
Sabra03G0071200 Salix brachista HOM05D004572 ORTHO05D005425 4.1e-13 80.1 141 31.9
FvH4_3g22160 Fragaria vesca HOM05D004572 ORTHO05D005425 5.4e-13 79.7 243 30.0
FAN11G3304 Fragaria x ananassa HOM05D004572 ORTHO05D005425 5.4e-13 79.7 243 30.0
CiPaw.11G104400 Carya illinoinensis HOM05D004572 ORTHO05D005425 7.1e-13 79.3 234 26.5
Potri.003G104200 Populus trichocarpa HOM05D004572 ORTHO05D005425 9.2e-13 79.0 171 28.1
ECA233G3653 Erigeron canadensis HOM05D004572 ORTHO05D005425 2.7e-12 77.4 240 25.8
PGR042G2393 Punica granatum HOM05D004572 ORTHO05D005425 2.7e-12 77.4 202 32.2
TWI34G1093 Tripterygium wilfordii HOM05D004572 ORTHO05D005425 2.7e-12 77.4 155 32.3
Os03g0253500 Oryza sativa ssp. japonica HOM05D004572 ORTHO05D005425 1.0e-11 75.5 154 33.1
Ca_12422_v3 Cicer arietinum L. HOM05D004572 ORTHO05D005425 1.3e-11 75.1 160 33.8
Ca_12425_v3 Cicer arietinum L. HOM05D004572 ORTHO05D005425 1.3e-11 75.1 160 33.8
Lsat_1_v5_gn_6_80001 Lactuca sativa HOM05D004572 ORTHO05D005425 2.3e-11 74.3 220 27.3
QL12p001966 Quercus lobata HOM05D004572 ORTHO05D005425 3.0e-11 73.9 194 28.9
Thhalv10027298m.g Eutrema salsugineum HOM05D004572 ORTHO05D005425 3.9e-11 73.6 206 30.1
Eucgr.E01208 Eucalyptus grandis HOM05D004572 ORTHO05D005425 5.1e-11 73.2 179 31.8
CSS0029181 Camellia sinensis var. sinensis HOM05D004572 ORTHO05D005425 6.6e-11 72.8 231 27.3
CSS0036523 Camellia sinensis var. sinensis HOM05D004572 ORTHO05D005425 6.6e-11 72.8 231 27.3
AL7G28150 Arabidopsis lyrata HOM05D004572 ORTHO05D005425 8.6e-11 72.4 199 30.2
CAN.G195.29 Capsicum annuum HOM05D004572 ORTHO05D005425 8.6e-11 72.4 76 47.4
RcHm_v2.0_Chr5g0037991 Rosa chinensis HOM05D004572 ORTHO05D005425 1.5e-10 71.6 148 33.1
unitig_748.g8160 Utricularia gibba HOM05D004572 ORTHO05D005425 1.5e-10 71.6 154 34.4
CDE11G0183 Ceratophyllum demersum HOM05D004572 ORTHO05D005425 1.9e-10 71.2 136 35.3
PSO170G2332 Papaver somniferum HOM05D004572 ORTHO05D005425 7.3e-10 69.3 136 32.4
Zm00001eb398470 Zea mays HOM05D004572 ORTHO05D005425 7.3e-10 69.3 105 44.8
AT4G25020 Arabidopsis thaliana HOM05D004572 ORTHO05D005425 2.1e-09 67.8 198 28.8
Lj8P410T5 Lonicera japonica HOM05D004572 ORTHO05D005425 2.8e-09 67.4 72 47.2
Aa31LG9G8960 Aethionema arabicum HOM05D000113 ORTHO05D002571 4.7e-09 66.6 178 30.3
FAN16G0157 Fragaria x ananassa HOM05D004572 ORTHO05D005425 6.2e-09 66.2 79 48.1
Sed0007980 Sechium edule HOM05D004572 ORTHO05D005425 6.2e-09 66.2 76 46.1
Prupe.4G208700 Prunus persica HOM05D004572 ORTHO05D005425 1.1e-08 65.5 208 29.8
Aqoxy7G00153 Aquilegia oxysepala HOM05D004572 ORTHO05D005425 1.4e-08 65.1 68 44.1
Carub.0007s1601 Capsella rubella HOM05D004572 ORTHO05D005425 1.4e-08 65.1 191 27.7
Sabra01G0100000 Salix brachista HOM05D004572 ORTHO05D005425 1.4e-08 65.1 76 35.5
VMungo0251G2350 Vigna mungo HOM05D004572 ORTHO05D005425 1.8e-08 64.7 125 35.2
Glyma.09G283500 Glycine max HOM05D004572 ORTHO05D005425 2.3e-08 64.3 67 47.8
Atru.chr6.2109 Acer truncatum HOM05D004572 ORTHO05D005425 8.9e-08 62.4 227 26.9
SalBow7G4536 Salvia bowleyana HOM05D000482 ORTHO05D000349 8.9e-08 62.4 79 41.8
TPR.G29795 Trifolium pratense HOM05D004572 ORTHO05D005425 1.5e-07 61.6 166 30.1
Ciclev10001464m.g Citrus clementina HOM05D004572 ORTHO05D005425 4.4e-07 60.1 64 40.6
SHI08932 Sapria himalayana HOM05D004572 ORTHO05D005425 4.4e-07 60.1 205 29.3
HanXRQChr03g0083281 Helianthus annuus HOM05D004572 ORTHO05D005425 9.9e-07 58.9 67 41.8


User provided reference genes

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