Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c1_6120 Physcomitrium patens HOM05D004396 ORTHO05D005272 2.1e-46 188.7 99 100.0
Pp3c2_30990 Physcomitrium patens HOM05D004396 ORTHO05D005272 4.0e-29 131.3 73 90.4
AT1G32210 Arabidopsis thaliana HOM05D004396 ORTHO05D005272 1.6e-22 109.4 71 76.1
arahy.Tifrunner.gnm1.ann1.KG0UNZ Arachis hypogaea HOM05D004396 ORTHO05D005272 2.1e-22 109.0 71 77.5
Sp1g27890 Schrenkiella parvula HOM05D004396 ORTHO05D005272 2.1e-22 109.0 71 76.1
Carub.0001s3054 Capsella rubella HOM05D004396 ORTHO05D005272 2.8e-22 108.6 71 74.6
AL1G46340 Arabidopsis lyrata HOM05D004396 ORTHO05D005272 4.7e-22 107.8 71 74.6
arahy.Tifrunner.gnm1.ann1.Z3U2VZ Arachis hypogaea HOM05D004396 ORTHO05D005272 4.7e-22 107.8 71 76.1
CARHR031580 Cardamine hirsuta HOM05D004396 ORTHO05D005272 4.7e-22 107.8 71 74.6
Ca_25178_v3 Cicer arietinum L. HOM05D004396 ORTHO05D005272 4.7e-22 107.8 71 74.6
Thhalv10009144m.g Eutrema salsugineum HOM05D004396 ORTHO05D005272 4.7e-22 107.8 71 74.6
SEGI_22391 Sequoiadendron giganteum HOM05D004396 ORTHO05D005272 4.7e-22 107.8 80 67.5
TWI60G0023 Tripterygium wilfordii HOM05D004396 ORTHO05D005272 1.1e-21 106.7 71 73.2
MSTRG.12178 Avicennia marina HOM05D004396 ORTHO05D005272 1.4e-21 106.3 75 68.0
BcaB03g13752 Brassica carinata HOM05D004396 ORTHO05D005272 1.8e-21 105.9 71 73.2
BcaB04g17995 Brassica carinata HOM05D004396 ORTHO05D005272 1.8e-21 105.9 71 73.2
A05p25120 Brassica napus HOM05D004396 ORTHO05D005272 1.8e-21 105.9 71 73.2
BraA05t21392Z Brassica rapa HOM05D004396 ORTHO05D005272 1.8e-21 105.9 71 73.2
TWI81G0111 Tripterygium wilfordii HOM05D004396 ORTHO05D005272 1.8e-21 105.9 71 73.2
BcaB07g32895 Brassica carinata HOM05D004396 ORTHO05D005272 2.3e-21 105.5 71 71.8
BcaC05g27252 Brassica carinata HOM05D004396 ORTHO05D005272 2.3e-21 105.5 71 71.8
C05p31610 Brassica napus HOM05D004396 ORTHO05D005272 2.3e-21 105.5 71 71.8
BolC3t13671H Brassica oleracea HOM05D004396 ORTHO05D005272 2.3e-21 105.5 71 71.8
BolC5t31884H Brassica oleracea HOM05D004396 ORTHO05D005272 2.3e-21 105.5 71 71.8
BraA09t38945Z Brassica rapa HOM05D004396 ORTHO05D005272 2.3e-21 105.5 71 71.8
ClCG10G001270 Citrullus lanatus HOM05D004396 ORTHO05D005272 3.1e-21 105.1 71 74.6
Glyma.09G207800 Glycine max HOM05D004396 ORTHO05D005272 4.0e-21 104.8 68 76.5
Glyma.14G201900 Glycine max HOM05D004396 ORTHO05D005272 4.0e-21 104.8 74 71.6
SGA_v2.0_scaffold36G14295 Striga asiatica HOM05D004396 ORTHO05D005272 4.0e-21 104.8 72 66.7
THA.LOC104814414 Tarenaya hassleriana HOM05D004396 ORTHO05D005272 4.0e-21 104.8 71 73.2
CSS0013599 Camellia sinensis var. sinensis HOM05D004396 ORTHO05D005272 5.2e-21 104.4 72 70.8
CSS0046263 Camellia sinensis var. sinensis HOM05D004396 ORTHO05D005272 5.2e-21 104.4 72 70.8
CARHR129690 Cardamine hirsuta HOM05D004396 ORTHO05D005272 5.2e-21 104.4 71 73.2
Cc08_g03470 Coffea canephora HOM05D004396 ORTHO05D005272 5.2e-21 104.4 74 70.3
Thhalv10017441m.g Eutrema salsugineum HOM05D004396 ORTHO05D005272 5.2e-21 104.4 71 71.8
Lalb_Chr05g0215751 Lupinus albus HOM05D004396 ORTHO05D005272 5.2e-21 104.4 71 73.2
Medtr3g023120 Medicago truncatula HOM05D004396 ORTHO05D005272 5.2e-21 104.4 71 74.6
Peaxi162Scf00170g00812 Petunia axillaris HOM05D004396 ORTHO05D005272 5.2e-21 104.4 74 70.3
ATR0626G058 Amborella trichopoda HOM05D004396 ORTHO05D005272 6.8e-21 104.0 76 65.8
AL4G31570 Arabidopsis lyrata HOM05D004396 ORTHO05D005272 6.8e-21 104.0 74 70.3
Ca_27048_v3 Cicer arietinum L. HOM05D004396 ORTHO05D005272 6.8e-21 104.0 73 71.2
Lj2g0004535 Lotus japonicus HOM05D004396 ORTHO05D005272 6.8e-21 104.0 71 74.6
Psat5g213400 Pisum sativum HOM05D004396 ORTHO05D005272 6.8e-21 104.0 71 74.6
vmacro00278 Vaccinium macrocarpon HOM05D004396 ORTHO05D005272 6.8e-21 104.0 72 72.2
CAN.G726.24 Capsicum annuum HOM05D004396 ORTHO05D005272 8.9e-21 103.6 74 70.3
DCAR_008222 Daucus carota HOM05D004396 ORTHO05D005272 8.9e-21 103.6 75 68.0
ECA240G0094 Erigeron canadensis HOM05D004396 ORTHO05D005272 8.9e-21 103.6 75 69.3
Phvul.002G136700 Phaseolus vulgaris HOM05D004396 ORTHO05D005272 8.9e-21 103.6 71 71.8
Solyc08g076460.3 Solanum lycopersicum HOM05D004396 ORTHO05D005272 8.9e-21 103.6 74 71.6
Sopen08g025040 Solanum pennellii HOM05D004396 ORTHO05D005272 8.9e-21 103.6 74 71.6
PGSC0003DMG400014795 Solanum tuberosum HOM05D004396 ORTHO05D005272 8.9e-21 103.6 74 71.6
THA.LOC104798491 Tarenaya hassleriana HOM05D004396 ORTHO05D005272 8.9e-21 103.6 71 71.8
Actinidia18135 Actinidia chinensis HOM05D004396 ORTHO05D005272 1.2e-20 103.2 72 69.4
Aa31LG2G13800 Aethionema arabicum HOM05D004396 ORTHO05D005272 1.2e-20 103.2 69 73.9
AT2G35520 Arabidopsis thaliana HOM05D004396 ORTHO05D005272 1.2e-20 103.2 71 71.8
CSS0033679 Camellia sinensis var. sinensis HOM05D004396 ORTHO05D005272 1.2e-20 103.2 72 70.8
Hma1.2p1_0870F.1_g230890 Hydrangea macrophylla HOM05D004396 ORTHO05D005272 1.2e-20 103.2 72 70.8
Manes.12G090054 Manihot esculenta HOM05D004396 ORTHO05D005272 1.2e-20 103.2 71 74.6
QL12p001650 Quercus lobata HOM05D004396 ORTHO05D005272 1.2e-20 103.2 71 71.8
Carub.0004s1721 Capsella rubella HOM05D004396 ORTHO05D005272 1.5e-20 102.8 71 71.8
CDE08G0196 Ceratophyllum demersum HOM05D004396 ORTHO05D005272 1.5e-20 102.8 71 67.6
Dinv29003 Davidia involucrata HOM05D004396 ORTHO05D005272 1.5e-20 102.8 72 70.8
Mapoly0046s0003 Marchantia polymorpha HOM05D004396 ORTHO05D005272 1.5e-20 102.8 74 70.3
Nn3g19387 Nelumbo nucifera HOM05D004396 ORTHO05D005272 1.5e-20 102.8 71 70.4
GSVIVG01013064001 Vitis vinifera HOM05D004396 ORTHO05D005272 1.5e-20 102.8 71 71.8
Aqoxy7G03666 Aquilegia oxysepala HOM05D004396 ORTHO05D005272 2.0e-20 102.4 76 65.8
Haze_08163 Corylus avellana HOM05D004396 ORTHO05D005272 2.0e-20 102.4 75 72.0
Lalb_Chr16g0381071 Lupinus albus HOM05D004396 ORTHO05D005272 2.0e-20 102.4 71 69.0
Rhsim11G0021700 Rhododendron simsii HOM05D004396 ORTHO05D005272 2.0e-20 102.4 72 70.8
AUR62036328 Chenopodium quinoa HOM05D004396 ORTHO05D005272 2.6e-20 102.1 71 70.4
CsaV3_3G001340 Cucumis sativus L. HOM05D004396 ORTHO05D005272 2.6e-20 102.1 71 73.2
Manes.04G055632 Manihot esculenta HOM05D004396 ORTHO05D005272 2.6e-20 102.1 71 73.2
PSO541G6011 Papaver somniferum HOM05D004396 ORTHO05D005272 2.6e-20 102.1 74 67.6
Nn1g00212 Nelumbo nucifera HOM05D004396 ORTHO05D005272 3.4e-20 101.7 71 69.0
Nitab4.5_0000529g0110 Nicotiana tabacum HOM05D004396 ORTHO05D005272 3.4e-20 101.7 74 68.9
TPR.G19425 Trifolium pratense HOM05D004396 ORTHO05D005272 3.4e-20 101.7 76 68.4
CiPaw.11G098400 Carya illinoinensis HOM05D004396 ORTHO05D005272 4.4e-20 101.3 71 71.8
ECA240G0984 Erigeron canadensis HOM05D000006 ORTHO05D000001 4.4e-20 101.3 75 69.3
PSO675G8737 Papaver somniferum HOM05D004396 ORTHO05D005272 4.4e-20 101.3 74 68.9
Potri.003G096800 Populus trichocarpa HOM05D004396 ORTHO05D005272 4.4e-20 101.3 71 67.6
TPR.G31993 Trifolium pratense HOM05D004396 ORTHO05D005272 4.4e-20 101.3 71 73.2
Ciclev10002883m.g Citrus clementina HOM05D004396 ORTHO05D005272 5.8e-20 100.9 71 71.8
PSO339G1317 Papaver somniferum HOM05D004396 ORTHO05D005272 5.8e-20 100.9 72 68.1
PSO384G3027 Papaver somniferum HOM05D004396 ORTHO05D005272 5.8e-20 100.9 72 68.1
TAR375G0183 Trochodendron aralioides HOM05D004396 ORTHO05D005272 5.8e-20 100.9 71 70.4
VMungo1215G3227 Vigna mungo HOM05D004396 ORTHO05D005272 5.8e-20 100.9 71 70.4
Actinidia14779 Actinidia chinensis HOM05D004396 ORTHO05D005272 7.5e-20 100.5 72 69.4
HanXRQChr13g0414241 Helianthus annuus HOM05D004396 ORTHO05D005272 7.5e-20 100.5 72 69.4
Dinv25260 Davidia involucrata HOM05D004396 ORTHO05D005272 9.8e-20 100.1 72 68.1
Oeu027093.1 Olea europaea HOM05D004396 ORTHO05D005272 9.8e-20 100.1 71 67.6
Sc24g0004110 Simmondsia chinensis HOM05D004396 ORTHO05D005272 9.8e-20 100.1 74 66.2
SGA_v2.0_scaffold198G41072 Striga asiatica HOM05D004396 ORTHO05D005272 9.8e-20 100.1 72 65.3
RcHm_v2.0_Chr6g0251281 Rosa chinensis HOM05D004396 ORTHO05D005272 1.3e-19 99.8 79 65.8
Sed0012676 Sechium edule HOM05D004396 ORTHO05D005272 1.3e-19 99.8 71 69.0
FAN24G1987 Fragaria x ananassa HOM05D004396 ORTHO05D005272 1.7e-19 99.4 79 64.6
FAN27G1914 Fragaria x ananassa HOM05D004396 ORTHO05D005272 1.7e-19 99.4 79 64.6
Ah.02g116090 Amaranthus hybridus HOM05D002241 ORTHO05D002458 2.2e-19 99.0 69 71.0
FAN20G1930 Fragaria x ananassa HOM05D004396 ORTHO05D005272 2.2e-19 99.0 79 64.6
Hma1.2p1_0890F.1_g233090 Hydrangea macrophylla HOM05D004396 ORTHO05D005272 2.2e-19 99.0 72 66.7
MD05G1007700 Malus domestica HOM05D004396 ORTHO05D005272 2.2e-19 99.0 72 70.8
MD10G1005100 Malus domestica HOM05D004396 ORTHO05D005272 2.2e-19 99.0 72 69.4
Sabra03G0065300 Salix brachista HOM05D004396 ORTHO05D005272 2.2e-19 99.0 71 67.6
PGSC0003DMG400018505 Solanum tuberosum HOM05D004396 ORTHO05D005272 2.2e-19 99.0 74 67.6
Lsat_1_v5_gn_6_80060 Lactuca sativa HOM05D004396 ORTHO05D005272 2.9e-19 98.6 75 65.3
COL.COLO4_16940 Corchorus olitorius HOM05D004396 ORTHO05D005272 3.7e-19 98.2 72 68.1
Gorai.003G185400 Gossypium raimondii HOM05D004396 ORTHO05D005272 3.7e-19 98.2 75 66.7
Nitab4.5_0000556g0250 Nicotiana tabacum HOM05D004396 ORTHO05D005272 3.7e-19 98.2 74 64.9
Nitab4.5_0004528g0030 Nicotiana tabacum HOM05D004396 ORTHO05D005272 3.7e-19 98.2 74 64.9
Prupe.8G007900 Prunus persica HOM05D004396 ORTHO05D005272 3.7e-19 98.2 72 70.8
Lsat_1_v5_gn_3_19181 Lactuca sativa HOM05D004396 ORTHO05D005272 4.9e-19 97.8 72 68.1
Prupe.4G286900 Prunus persica HOM05D004396 ORTHO05D005272 4.9e-19 97.8 72 70.8
SalBow1G7612 Salvia bowleyana HOM05D004396 ORTHO05D005272 4.9e-19 97.8 72 62.5
Thecc.03G310300 Theobroma cacao HOM05D004396 ORTHO05D005272 4.9e-19 97.8 72 68.1
unitig_899.g15442 Utricularia gibba HOM05D004396 ORTHO05D005272 4.9e-19 97.8 70 67.1
Eucgr.H00688 Eucalyptus grandis HOM05D004396 ORTHO05D005272 8.3e-19 97.1 71 69.0
FAN15G2154 Fragaria x ananassa HOM05D004396 ORTHO05D005272 8.3e-19 97.1 77 63.6
Lj4g0004552 Lotus japonicus HOM05D004396 ORTHO05D005272 8.3e-19 97.1 71 67.6
Hund10776 Selenicereus undatus HOM05D004396 ORTHO05D005272 8.3e-19 97.1 69 71.0
Cpa.g.sc42.149 Carica papaya HOM05D004396 ORTHO05D005272 1.1e-18 96.7 71 67.6
Duzib084G0048 Durio zibethinus HOM05D004396 ORTHO05D005272 1.1e-18 96.7 75 65.3
Duzib205G0471 Durio zibethinus HOM05D004396 ORTHO05D005272 1.1e-18 96.7 75 65.3
Gohir.D03G176200 Gossypium hirsutum HOM05D004396 ORTHO05D005272 1.1e-18 96.7 73 67.1
Medtr5g029240 Medicago truncatula HOM05D004396 ORTHO05D005272 1.1e-18 96.7 83 62.7
PGR031G0362 Punica granatum HOM05D004396 ORTHO05D005272 1.1e-18 96.7 71 67.6
PGR031G2119 Punica granatum HOM05D004396 ORTHO05D005272 1.1e-18 96.7 71 67.6
Ciclev10013120m.g Citrus clementina HOM05D004396 ORTHO05D005272 1.4e-18 96.3 71 67.6
Sc01g0005580 Simmondsia chinensis HOM05D004396 ORTHO05D005272 1.4e-18 96.3 71 66.2
HanXRQChr06g0172781 Helianthus annuus HOM05D004396 ORTHO05D005272 1.9e-18 95.9 71 67.6
Rhsim07G0132100 Rhododendron simsii HOM05D004396 ORTHO05D005272 1.9e-18 95.9 72 66.7
CiPaw.12G068300 Carya illinoinensis HOM05D004396 ORTHO05D005272 2.4e-18 95.5 71 67.6
FvH4_2g00930 Fragaria vesca HOM05D004396 ORTHO05D005272 5.4e-18 94.4 68 69.1
Gohir.A03G000033 Gossypium hirsutum HOM05D004396 ORTHO05D005272 5.4e-18 94.4 75 65.3
Sabra01G0105900 Salix brachista HOM05D004396 ORTHO05D005272 5.4e-18 94.4 71 66.2
Migut.A01174 Erythranthe guttata HOM05D004396 ORTHO05D005272 7.0e-18 94.0 75 60.0
Atru.chr6.1524 Acer truncatum HOM05D004396 ORTHO05D005272 1.2e-17 93.2 67 68.7
Gohir.A12G206100 Gossypium hirsutum HOM05D004396 ORTHO05D005272 1.2e-17 93.2 72 65.3
Gohir.D12G208400 Gossypium hirsutum HOM05D004396 ORTHO05D005272 1.2e-17 93.2 72 65.3
Gorai.008G224000 Gossypium raimondii HOM05D004396 ORTHO05D005272 1.2e-17 93.2 72 65.3
SMO117G0136 Selaginella moellendorffii HOM05D004396 ORTHO05D005272 1.6e-17 92.8 67 64.2
Potri.001G136800 Populus trichocarpa HOM05D004396 ORTHO05D005272 2.0e-17 92.4 71 66.2
HPP92_025493 Vanilla planifolia HOM05D004396 ORTHO05D005272 4.6e-17 91.3 71 60.6
Os04g0397000 Oryza sativa ssp. japonica HOM05D004396 ORTHO05D005272 1.7e-16 89.4 73 61.6
HPP92_025445 Vanilla planifolia HOM05D004396 ORTHO05D005272 1.7e-16 89.4 71 59.2
AagrBONN_evm.TU.Sc2ySwM_362.1218 Anthoceros agrestis HOM05D000444 ORTHO05D000489 5.0e-16 87.8 72 56.9
Zm00001eb379050 Zea mays HOM05D004396 ORTHO05D005272 2.5e-15 85.5 73 60.3
EL10Ac5g11811 Beta vulgaris HOM05D004396 ORTHO05D005272 7.3e-15 84.0 107 47.7
Peaxi162Scf00045g00321 Petunia axillaris HOM05D004396 ORTHO05D005272 1.7e-11 72.8 47 76.6
Cre02.g108400 Chlamydomonas reinhardtii HOM05D004396 ORTHO05D005272 4.9e-11 71.2 64 50.0
Migut.E00744 Erythranthe guttata HOM05D004396 ORTHO05D005272 1.9e-10 69.3 46 65.2
C03p12000 Brassica napus HOM05D004396 ORTHO05D023989 1.7e-08 62.8 48 64.6
A08p09310 Brassica napus HOM05D004396 ORTHO05D005272 1.9e-07 59.3 66 50.0
BraA08t32929Z Brassica rapa HOM05D004396 ORTHO05D005272 1.9e-07 59.3 66 50.0
A09p33990 Brassica napus HOM05D004396 ORTHO05D005272 2.5e-07 58.9 43 65.1
BolC8t47998H Brassica oleracea HOM05D004396 ORTHO05D005272 2.5e-07 58.9 64 53.1
C05p39130 Brassica napus HOM05D004396 ORTHO05D005272 7.3e-07 57.4 41 68.3
BolC5t32648H Brassica oleracea HOM05D004396 ORTHO05D005272 7.3e-07 57.4 41 68.3
Hund15006 Selenicereus undatus HOM05D004396 ORTHO05D005272 2.8e-06 55.5 33 75.8
CAN.G1987.1 Capsicum annuum HOM05D004396 ORTHO05D005272 4.7e-06 54.7 31 80.6
Cfa012506 Carpinus fangiana HOM05D004396 ORTHO05D005272 8.1e-06 53.9 37 70.3


User provided reference genes

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