Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c1_42750 Physcomitrium patens HOM05D005734 ORTHO05D006990 4.0e-111 404.8 214 100.0
Pp3c14_25740 Physcomitrium patens HOM05D005734 ORTHO05D006990 3.7e-64 248.8 219 68.9
Peaxi162Scf00083g00086 Petunia axillaris HOM05D005734 ORTHO05D006990 1.1e-26 124.4 202 37.6
Sabra07G0011400 Salix brachista HOM05D005734 ORTHO05D006990 2.3e-26 123.2 217 36.9
CSS0031169 Camellia sinensis var. sinensis HOM05D005734 ORTHO05D006990 8.9e-26 121.3 191 39.3
Dinv33615 Davidia involucrata HOM05D005734 ORTHO05D006990 8.9e-26 121.3 193 39.4
Solyc02g084220.3 Solanum lycopersicum HOM05D005734 ORTHO05D006990 1.5e-25 120.6 186 38.7
Sopen02g028960 Solanum pennellii HOM05D005734 ORTHO05D006990 1.5e-25 120.6 186 38.7
Actinidia31004 Actinidia chinensis HOM05D005734 ORTHO05D006990 3.4e-25 119.4 191 37.2
Carub.0008s2820 Capsella rubella HOM05D005734 ORTHO05D006990 5.8e-25 118.6 189 40.2
Potri.005G116300 Populus trichocarpa HOM05D005734 ORTHO05D006990 5.8e-25 118.6 187 36.9
TAR376G0390 Trochodendron aralioides HOM05D005734 ORTHO05D006990 5.8e-25 118.6 210 33.3
SalBow3G4629 Salvia bowleyana HOM05D005734 ORTHO05D006990 7.5e-25 118.2 217 35.0
MSTRG.2698 Avicennia marina HOM05D005734 ORTHO05D006990 9.8e-25 117.9 185 37.3
COL.COLO4_21933 Corchorus olitorius HOM05D005734 ORTHO05D006990 9.8e-25 117.9 190 39.5
AT5G66290 Arabidopsis thaliana HOM05D005734 ORTHO05D006990 1.7e-24 117.1 188 41.5
Gohir.D03G010200 Gossypium hirsutum HOM05D005734 ORTHO05D006990 2.9e-24 116.3 190 38.4
Mapoly0166s0009 Marchantia polymorpha HOM05D005734 ORTHO05D006990 2.9e-24 116.3 157 43.9
QL06p033653 Quercus lobata HOM05D005734 ORTHO05D006990 2.9e-24 116.3 189 38.1
Cc07_g10570 Coffea canephora HOM05D005734 ORTHO05D006990 4.9e-24 115.5 190 36.3
Manes.02G102700 Manihot esculenta HOM05D005734 ORTHO05D006990 4.9e-24 115.5 209 39.2
Gorai.003G010600 Gossypium raimondii HOM05D005734 ORTHO05D006990 8.3e-24 114.8 190 37.9
TAR628G0339 Trochodendron aralioides HOM05D005734 ORTHO05D006990 8.3e-24 114.8 200 33.0
Lj2C466G2 Lonicera japonica HOM05D005734 ORTHO05D006990 1.1e-23 114.4 204 33.8
Nitab4.5_0005721g0110 Nicotiana tabacum HOM05D005734 ORTHO05D006990 1.1e-23 114.4 203 36.9
Sp2g30330 Schrenkiella parvula HOM05D005734 ORTHO05D006990 1.1e-23 114.4 185 38.9
CiPaw.08G133400 Carya illinoinensis HOM05D005734 ORTHO05D006990 1.4e-23 114.0 194 39.2
Rhsim08G0034500 Rhododendron simsii HOM05D005734 ORTHO05D006990 1.4e-23 114.0 194 35.6
MD15G1247200 Malus domestica HOM05D005734 ORTHO05D006990 1.9e-23 113.6 180 36.7
Sabra05G0095300 Salix brachista HOM05D005734 ORTHO05D006990 1.9e-23 113.6 187 35.3
CsaV3_4G005730 Cucumis sativus L. HOM05D005734 ORTHO05D006990 2.4e-23 113.2 195 36.4
Gohir.A02G169800 Gossypium hirsutum HOM05D005734 ORTHO05D006990 2.4e-23 113.2 192 37.5
Lsat_1_v5_gn_3_73980 Lactuca sativa HOM05D005734 ORTHO05D006990 2.4e-23 113.2 201 35.8
Psat2g155360 Pisum sativum HOM05D005734 ORTHO05D006990 2.4e-23 113.2 220 35.5
A07p17570 Brassica napus HOM05D005734 ORTHO05D006990 3.2e-23 112.8 185 37.8
DCAR_017347 Daucus carota HOM05D005734 ORTHO05D006990 3.2e-23 112.8 195 38.5
THA.LOC104819182 Tarenaya hassleriana HOM05D005734 ORTHO05D006990 3.2e-23 112.8 192 37.0
FvH4_1g12000 Fragaria vesca HOM05D005734 ORTHO05D006990 4.1e-23 112.5 181 39.2
FAN19G0086 Fragaria x ananassa HOM05D005734 ORTHO05D006990 4.1e-23 112.5 181 39.2
HanXRQChr15g0482851 Helianthus annuus HOM05D005734 ORTHO05D006990 4.1e-23 112.5 195 38.5
MD02G1134200 Malus domestica HOM05D005734 ORTHO05D006990 4.1e-23 112.5 180 37.2
PGSC0003DMG400003554 Solanum tuberosum HOM05D005734 ORTHO05D006990 4.1e-23 112.5 212 36.8
A09p10030 Brassica napus HOM05D005734 ORTHO05D006990 5.4e-23 112.1 204 36.8
GSVIVG01018804001 Vitis vinifera HOM05D005734 ORTHO05D006990 5.4e-23 112.1 214 33.2
ClCG07G008420 Citrullus lanatus HOM05D005734 ORTHO05D006990 7.1e-23 111.7 195 35.9
SMO228G0004 Selaginella moellendorffii HOM05D005734 ORTHO05D006990 7.1e-23 111.7 111 47.7
Thecc.01G021200 Theobroma cacao HOM05D005734 ORTHO05D006990 7.1e-23 111.7 190 37.9
Ah.03g141620 Amaranthus hybridus HOM05D005734 ORTHO05D006990 1.2e-22 110.9 190 38.4
AL8G45230 Arabidopsis lyrata HOM05D005734 ORTHO05D006990 1.2e-22 110.9 189 38.6
Ciclev10026469m.g Citrus clementina HOM05D005734 ORTHO05D006990 1.2e-22 110.9 181 34.8
ECA246G4348 Erigeron canadensis HOM05D000013 ORTHO05D000011 1.2e-22 110.9 185 36.8
Phvul.002G110400 Phaseolus vulgaris HOM05D005734 ORTHO05D006990 1.2e-22 110.9 186 36.6
Thhalv10004735m.g Eutrema salsugineum HOM05D005734 ORTHO05D006990 1.6e-22 110.5 184 38.6
Lj2g0025294 Lotus japonicus HOM05D005734 ORTHO05D006990 1.6e-22 110.5 192 37.0
Gohir.A12G060300 Gossypium hirsutum HOM05D005734 ORTHO05D006990 2.1e-22 110.2 181 39.2
Nitab4.5_0004254g0030 Nicotiana tabacum HOM05D005734 ORTHO05D006990 2.1e-22 110.2 203 36.5
Medtr5g021750 Medicago truncatula HOM05D005734 ORTHO05D006990 2.7e-22 109.8 217 33.2
RcHm_v2.0_Chr2g0099641 Rosa chinensis HOM05D005734 ORTHO05D006990 2.7e-22 109.8 190 38.4
TPR.G2344 Trifolium pratense HOM05D005734 ORTHO05D006990 2.7e-22 109.8 189 36.5
BcaB02g10036 Brassica carinata HOM05D005734 ORTHO05D006990 3.5e-22 109.4 186 36.6
BcaC06g34694 Brassica carinata HOM05D005734 ORTHO05D006990 3.5e-22 109.4 186 36.6
C07p25530 Brassica napus HOM05D005734 ORTHO05D006990 3.5e-22 109.4 186 36.6
BolC7t43073H Brassica oleracea HOM05D005734 ORTHO05D006990 3.5e-22 109.4 186 36.6
Eucgr.K02152 Eucalyptus grandis HOM05D005734 ORTHO05D006990 3.5e-22 109.4 209 35.9
Sed0005630 Sechium edule HOM05D005734 ORTHO05D006990 3.5e-22 109.4 185 37.3
Aqoxy4G02678 Aquilegia oxysepala HOM05D005734 ORTHO05D006990 4.6e-22 109.0 183 35.0
Glyma.11G075600 Glycine max HOM05D005734 ORTHO05D006990 4.6e-22 109.0 186 36.0
Nn6g32291 Nelumbo nucifera HOM05D005734 ORTHO05D006990 4.6e-22 109.0 180 36.1
Aa31LG1G14770 Aethionema arabicum HOM05D005734 ORTHO05D006990 6.0e-22 108.6 188 37.2
Glyma.01G167600 Glycine max HOM05D005734 ORTHO05D006990 6.0e-22 108.6 217 34.6
TWI73G0895 Tripterygium wilfordii HOM05D005734 ORTHO05D006990 6.0e-22 108.6 207 35.3
Cpa.g.sc6.229 Carica papaya HOM05D005734 ORTHO05D006990 7.8e-22 108.2 180 38.9
Lalb_Chr16g0391171 Lupinus albus HOM05D005734 ORTHO05D006990 7.8e-22 108.2 189 34.4
Aqoxy4G02673 Aquilegia oxysepala HOM05D005734 ORTHO05D006990 1.3e-21 107.5 183 34.4
Duzib147G0754 Durio zibethinus HOM05D005734 ORTHO05D006990 1.3e-21 107.5 181 38.7
ATR0147G004 Amborella trichopoda HOM05D005734 ORTHO05D006990 1.7e-21 107.1 187 36.9
Migut.H01144 Erythranthe guttata HOM05D005734 ORTHO05D006990 2.3e-21 106.7 196 33.7
TWI09G0878 Tripterygium wilfordii HOM05D005734 ORTHO05D006990 2.3e-21 106.7 189 37.6
EL10Ac3g07303 Beta vulgaris HOM05D005734 ORTHO05D006990 3.0e-21 106.3 186 34.9
BcaC04g23124 Brassica carinata HOM05D005734 ORTHO05D006990 3.9e-21 105.9 208 35.1
arahy.Tifrunner.gnm1.ann1.GC558H Arachis hypogaea HOM05D005734 ORTHO05D006990 5.1e-21 105.5 182 36.8
BcaC04g23120 Brassica carinata HOM05D005734 ORTHO05D006990 5.1e-21 105.5 195 36.4
BcaNung05273 Brassica carinata HOM05D005734 ORTHO05D006990 5.1e-21 105.5 202 36.1
Ca_24908_v3 Cicer arietinum L. HOM05D005734 ORTHO05D006990 5.1e-21 105.5 183 36.1
VMungo1215G0268 Vigna mungo HOM05D005734 ORTHO05D006990 5.1e-21 105.5 189 36.0
Hund14038 Selenicereus undatus HOM05D005734 ORTHO05D006990 8.6e-21 104.8 227 33.0
FAN26G0019 Fragaria x ananassa HOM05D005734 ORTHO05D006990 1.1e-20 104.4 181 37.6
Prupe.7G166600 Prunus persica HOM05D005734 ORTHO05D006990 2.5e-20 103.2 180 35.0
C09p11890 Brassica napus HOM05D005734 ORTHO05D006990 3.3e-20 102.8 197 34.0
BolC9t54077H Brassica oleracea HOM05D005734 ORTHO05D006990 4.3e-20 102.4 191 35.1
HanXRQChr16g0531031 Helianthus annuus HOM05D005734 ORTHO05D006990 5.6e-20 102.1 190 33.7
HPP92_018404 Vanilla planifolia HOM05D005734 ORTHO05D006990 5.6e-20 102.1 194 35.6
PSO210G7806 Papaver somniferum HOM05D005734 ORTHO05D006990 9.5e-20 101.3 227 31.7
Zm00001eb055930 Zea mays HOM05D005734 ORTHO05D006990 2.1e-19 100.1 171 34.5
BcaNung04509 Brassica carinata HOM05D005734 ORTHO05D006990 2.8e-19 99.8 186 34.9
Os03g0727100 Oryza sativa ssp. japonica HOM05D005734 ORTHO05D006990 6.2e-19 98.6 200 35.5
SGA_v2.0_scaffold137G35098 Striga asiatica HOM05D005734 ORTHO05D006990 6.2e-19 98.6 108 46.3
unitig_699.g19712 Utricularia gibba HOM05D005734 ORTHO05D006990 8.1e-19 98.2 182 34.6
Cfa006957 Carpinus fangiana HOM05D005734 ORTHO05D006990 1.1e-18 97.8 127 42.5
arahy.Tifrunner.gnm1.ann1.DFQ3ES Arachis hypogaea HOM05D005734 ORTHO05D006990 1.4e-18 97.4 111 45.0
AagrBONN_evm.TU.Sc2ySwM_117.481 Anthoceros agrestis HOM05D005734 ORTHO05D006990 1.8e-18 97.1 141 43.3
CSS0021905 Camellia sinensis var. sinensis HOM05D005734 ORTHO05D006990 3.1e-18 96.3 121 41.3
CSS0012385 Camellia sinensis var. sinensis HOM05D005734 ORTHO05D006990 4.0e-18 95.9 121 41.3
MBI05_g26512_MAGBIO Magnolia biondii HOM05D005734 ORTHO05D006990 4.0e-18 95.9 220 34.5
vmacro18422 Vaccinium macrocarpon HOM05D005734 ORTHO05D006990 4.0e-18 95.9 148 37.8
Atru.chr3.782 Acer truncatum HOM05D005734 ORTHO05D006990 5.2e-18 95.5 154 35.7
CARHR281420 Cardamine hirsuta HOM05D005734 ORTHO05D006990 6.8e-18 95.1 119 41.2
Nn5g29268 Nelumbo nucifera HOM05D005734 ORTHO05D006990 8.9e-18 94.7 200 33.0
Sc16g0002040 Simmondsia chinensis HOM05D005734 ORTHO05D006990 8.9e-18 94.7 108 46.3
ATR0876G001 Amborella trichopoda HOM05D005734 ORTHO05D006990 1.2e-17 94.4 114 44.7
QL06p033647 Quercus lobata HOM05D005734 ORTHO05D006990 1.5e-17 94.0 107 43.0
RcHm_v2.0_Chr5g0080231 Rosa chinensis HOM05D005734 ORTHO05D006990 1.3e-16 90.9 128 39.8
Lsat_1_v5_gn_4_152781 Lactuca sativa HOM05D005734 ORTHO05D006990 1.7e-16 90.5 186 33.3
RcHm_v2.0_Chr0c39g0503221 Rosa chinensis HOM05D005734 ORTHO05D006990 2.2e-16 90.1 128 39.8
RcHm_v2.0_Chr1g0353231 Rosa chinensis HOM05D005734 ORTHO05D006990 2.2e-16 90.1 128 39.8
AUR62018084 Chenopodium quinoa HOM05D005734 ORTHO05D006990 4.9e-16 89.0 125 38.4
CDE11G0627 Ceratophyllum demersum HOM05D005734 ORTHO05D006990 6.0e-14 82.0 103 39.8
Potri.007G014000 Populus trichocarpa HOM05D005734 ORTHO05D006990 1.0e-13 81.3 142 37.3
MELO3C016376.2 Cucumis melo HOM05D005734 ORTHO05D006990 3.9e-13 79.3 142 36.6
Sc16g0006390 Simmondsia chinensis HOM05D005734 ORTHO05D006990 1.5e-12 77.4 80 50.0
FAN23G1819 Fragaria x ananassa HOM05D005734 ORTHO05D006990 4.3e-12 75.9 173 38.2
Sc18g0002570 Simmondsia chinensis HOM05D005734 ORTHO05D006990 9.6e-12 74.7 80 48.8
Sc09g0006730 Simmondsia chinensis HOM05D005734 ORTHO05D006990 1.8e-10 70.5 80 47.5
Haze_03794 Corylus avellana HOM05D005734 ORTHO05D006990 9.9e-09 64.7 68 48.5
BraA09t36646Z Brassica rapa HOM05D005734 ORTHO05D006990 1.4e-07 60.8 106 37.7
CDE05G1720 Ceratophyllum demersum HOM05D005734 ORTHO05D006990 1.6e-06 57.4 183 31.1


User provided reference genes

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