Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c1_42330 Physcomitrium patens HOM05D007808 ORTHO05D009895 4.0e-273 944.1 466 100.0
Pp3c1_42340 Physcomitrium patens HOM05D007808 ORTHO05D009895 1.7e-45 188.0 117 80.3
AagrBONN_evm.TU.Sc2ySwM_117.2846 Anthoceros agrestis HOM05D007808 ORTHO05D009895 2.4e-23 114.4 440 25.7
Cc01_g17900 Coffea canephora HOM05D007808 ORTHO05D009895 7.9e-19 99.4 428 24.8
GSVIVG01028406001 Vitis vinifera HOM05D007808 ORTHO05D009895 7.9e-19 99.4 400 25.2
Zm00001eb191560 Zea mays HOM05D007808 ORTHO05D009895 1.0e-18 99.0 477 25.4
AT5G44010 Arabidopsis thaliana HOM05D007808 ORTHO05D009895 3.9e-18 97.1 412 24.8
Carub.0008s0453 Capsella rubella HOM05D007808 ORTHO05D009895 1.1e-17 95.5 415 25.3
Os02g0814600 Oryza sativa ssp. japonica HOM05D007808 ORTHO05D009895 1.1e-17 95.5 470 23.6
RcHm_v2.0_Chr6g0286881 Rosa chinensis HOM05D007808 ORTHO05D009895 5.7e-17 93.2 452 22.8
Hma1.2p1_0273F.1_g109280 Hydrangea macrophylla HOM05D007808 ORTHO05D009895 1.3e-16 92.0 460 24.6
AL8G16070 Arabidopsis lyrata HOM05D007808 ORTHO05D009895 1.6e-16 91.7 410 23.9
PSO832G1361 Papaver somniferum HOM05D007808 ORTHO05D009895 3.7e-16 90.5 474 22.8
Potri.014G192200 Populus trichocarpa HOM05D007808 ORTHO05D009895 4.8e-16 90.1 470 23.8
A09p20750 Brassica napus HOM05D007808 ORTHO05D009895 1.4e-15 88.6 407 23.3
CANSAT01G0990 Cannabis sativa HOM05D007808 ORTHO05D009895 1.8e-15 88.2 464 22.6
Migut.D00468 Erythranthe guttata HOM05D007808 ORTHO05D009895 1.8e-15 88.2 464 22.8
Manes.13G040600 Manihot esculenta HOM05D007808 ORTHO05D009895 1.8e-15 88.2 466 23.4
Prupe.8G216500 Prunus persica HOM05D007808 ORTHO05D009895 3.1e-15 87.4 448 22.8
QL09p041160 Quercus lobata HOM05D007808 ORTHO05D009895 4.1e-15 87.0 472 22.9
BraA09t37679Z Brassica rapa HOM05D007808 ORTHO05D009895 9.0e-15 85.9 407 23.1
Ciclev10020041m.g Citrus clementina HOM05D007808 ORTHO05D009895 4.5e-14 83.6 464 21.8
Gohir.D07G157600 Gossypium hirsutum HOM05D007808 ORTHO05D009895 4.5e-14 83.6 462 22.5
Actinidia37545 Actinidia chinensis HOM05D007808 ORTHO05D009895 5.9e-14 83.2 454 21.6
BcaC04g21876 Brassica carinata HOM05D007808 ORTHO05D009895 5.9e-14 83.2 417 23.7
C09p26260 Brassica napus HOM05D007808 ORTHO05D009895 5.9e-14 83.2 417 23.7
Gohir.A07G151000 Gossypium hirsutum HOM05D007808 ORTHO05D009895 1.0e-13 82.4 463 22.5
Duzib138G1393 Durio zibethinus HOM05D007808 ORTHO05D009895 1.7e-13 81.6 487 21.6
HanXRQChr04g0111341 Helianthus annuus HOM05D007808 ORTHO05D009895 2.9e-13 80.9 462 22.7
BcaB07g30982 Brassica carinata HOM05D007808 ORTHO05D009895 3.8e-13 80.5 409 23.0
CARHR179280 Cardamine hirsuta HOM05D007808 ORTHO05D009895 3.8e-13 80.5 356 25.3
THA.LOC104801132 Tarenaya hassleriana HOM05D007808 ORTHO05D009895 3.8e-13 80.5 421 23.8
Aqoxy5G00155 Aquilegia oxysepala HOM05D007808 ORTHO05D009895 6.5e-13 79.7 449 24.7
FAN27G2486 Fragaria x ananassa HOM05D007808 ORTHO05D009895 8.5e-13 79.3 434 22.1
SalBow4G3111 Salvia bowleyana HOM05D007808 ORTHO05D009895 8.5e-13 79.3 418 22.7
FAN20G2653 Fragaria x ananassa HOM05D007808 ORTHO05D009895 1.1e-12 79.0 432 21.5
Lj2C1144T6 Lonicera japonica HOM05D007808 ORTHO05D009895 1.1e-12 79.0 137 35.8
Oeu039657.1 Olea europaea HOM05D007808 ORTHO05D009895 2.5e-12 77.8 258 27.9
FvH4_2g20710 Fragaria vesca HOM05D007808 ORTHO05D009895 3.2e-12 77.4 455 21.5
Gorai.001G180500 Gossypium raimondii HOM05D007808 ORTHO05D009895 4.2e-12 77.0 206 30.1
PSO764G0215 Papaver somniferum HOM05D007808 ORTHO05D009895 4.2e-12 77.0 432 22.0
Peaxi162Scf00415g00913 Petunia axillaris HOM05D007808 ORTHO05D009895 4.2e-12 77.0 115 39.1
Atru.chr5.1818 Acer truncatum HOM05D007808 ORTHO05D009895 7.2e-12 76.3 470 23.2
Nitab4.5_0010039g0030 Nicotiana tabacum HOM05D007808 ORTHO05D009895 2.1e-11 74.7 115 36.5
Thecc.01G251900 Theobroma cacao HOM05D007808 ORTHO05D009895 2.1e-11 74.7 467 22.5
Lsat_1_v5_gn_8_92100 Lactuca sativa HOM05D007808 ORTHO05D009895 4.6e-11 73.6 274 24.5
FAN15G3261 Fragaria x ananassa HOM05D007808 ORTHO05D009895 6.1e-11 73.2 135 29.6
MBI10_g30718_MAGBIO Magnolia biondii HOM05D007808 ORTHO05D009895 1.3e-10 72.0 141 30.5
ATR0736G152 Amborella trichopoda HOM05D007808 ORTHO05D009895 1.8e-10 71.6 113 36.3
Haze_24684 Corylus avellana HOM05D007808 ORTHO05D009895 2.3e-10 71.2 113 34.5
Nn1g02938 Nelumbo nucifera HOM05D007808 ORTHO05D009895 5.1e-10 70.1 131 31.3
PGR031G1809 Punica granatum HOM05D007808 ORTHO05D009895 8.7e-10 69.3 131 29.8
Solyc09g072860.2 Solanum lycopersicum HOM05D007808 ORTHO05D009895 1.1e-09 68.9 113 32.7
BolC9t55528H Brassica oleracea HOM05D007808 ORTHO05D009895 1.9e-09 68.2 110 34.5
FAN24G0750 Fragaria x ananassa HOM05D007808 ORTHO05D009895 1.9e-09 68.2 117 30.8
Sopen09g028660 Solanum pennellii HOM05D007808 ORTHO05D009895 2.5e-09 67.8 113 33.6
TWI18G1304 Tripterygium wilfordii HOM05D007808 ORTHO05D009895 4.3e-09 67.0 205 24.9
HPP92_025831 Vanilla planifolia HOM05D007808 ORTHO05D009895 4.3e-09 67.0 117 37.6
COL.COLO4_10584 Corchorus olitorius HOM05D007808 ORTHO05D009895 1.3e-08 65.5 110 37.3
CSS0017675 Camellia sinensis var. sinensis HOM05D007808 ORTHO05D009895 1.6e-08 65.1 113 33.6
CSS0046569 Camellia sinensis var. sinensis HOM05D007808 ORTHO05D009895 1.6e-08 65.1 113 33.6
Sabra14G0143900 Salix brachista HOM05D007808 ORTHO05D009895 2.2e-08 64.7 141 29.8
TAR633G0330 Trochodendron aralioides HOM05D007808 ORTHO05D009895 2.2e-08 64.7 132 31.1
Cpa.g.sc87.15 Carica papaya HOM05D007808 ORTHO05D009895 2.8e-08 64.3 134 29.9
DCAR_018515 Daucus carota HOM05D007808 ORTHO05D009895 6.3e-08 63.2 134 29.1
CiPaw.04G189400 Carya illinoinensis HOM05D007808 ORTHO05D009895 3.1e-07 60.8 83 37.3
CAN.G1395.2 Capsicum annuum HOM05D007808 ORTHO05D009895 5.3e-07 60.1 113 31.9


User provided reference genes

Program Settings