Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c1_41950 Physcomitrium patens HOM05D004580 ORTHO05D005917 1.3e-222 776.2 407 100.0
Pp3c2_670 Physcomitrium patens HOM05D004580 ORTHO05D005917 4.1e-173 611.7 349 83.1
Mapoly0004s0171 Marchantia polymorpha HOM05D004580 ORTHO05D005917 6.2e-145 518.1 327 73.7
AagrBONN_evm.TU.Sc2ySwM_117.2526 Anthoceros agrestis HOM05D004580 ORTHO05D005917 2.1e-140 503.1 352 69.9
SEGI_24357 Sequoiadendron giganteum HOM05D004580 ORTHO05D005917 2.3e-131 473.0 336 66.4
arahy.Tifrunner.gnm1.ann1.UE4JHM Arachis hypogaea HOM05D004580 ORTHO05D005917 4.8e-129 465.3 341 64.5
arahy.Tifrunner.gnm1.ann1.T3Z839 Arachis hypogaea HOM05D004580 ORTHO05D005917 4.0e-128 462.2 340 64.4
Manes.18G065933 Manihot esculenta HOM05D004580 ORTHO05D005917 4.0e-128 462.2 337 63.5
ATR0706G027 Amborella trichopoda HOM05D004580 ORTHO05D005917 7.6e-127 458.0 321 67.9
Nn5g30292 Nelumbo nucifera HOM05D004580 ORTHO05D005917 7.6e-127 458.0 339 63.4
VMungo1127G0933 Vigna mungo HOM05D004580 ORTHO05D005917 1.0e-126 457.6 344 63.7
Cfa013658 Carpinus fangiana HOM05D004580 ORTHO05D005917 2.9e-126 456.1 347 63.4
Phvul.011G102600 Phaseolus vulgaris HOM05D004580 ORTHO05D005917 2.9e-126 456.1 336 64.6
COL.COLO4_12032 Corchorus olitorius HOM05D004580 ORTHO05D005917 3.8e-126 455.7 340 63.5
Haze_22292 Corylus avellana HOM05D004580 ORTHO05D005917 6.5e-126 454.9 347 62.8
Sed0021368 Sechium edule HOM05D004580 ORTHO05D005917 8.4e-126 454.5 350 62.3
Atru.chr13.1137 Acer truncatum HOM05D004580 ORTHO05D005917 1.1e-125 454.1 344 62.8
Duzib093G0091 Durio zibethinus HOM05D004580 ORTHO05D005917 1.4e-125 453.8 339 62.8
Hma1.2p1_0044F.1_g026170 Hydrangea macrophylla HOM05D004580 ORTHO05D005917 4.2e-125 452.2 339 63.1
MBI05_g34722_MAGBIO Magnolia biondii HOM05D004580 ORTHO05D005917 4.2e-125 452.2 337 64.4
Ciclev10001487m.g Citrus clementina HOM05D004580 ORTHO05D005917 9.3e-125 451.1 348 61.5
Aqoxy7G04111 Aquilegia oxysepala HOM05D004580 ORTHO05D005917 2.1e-124 449.9 339 61.9
THA.LOC104813113 Tarenaya hassleriana HOM05D004580 ORTHO05D005917 2.1e-124 449.9 337 63.8
Thecc.08G104300 Theobroma cacao HOM05D004580 ORTHO05D005917 2.1e-124 449.9 350 62.3
AT4G08960 Arabidopsis thaliana HOM05D004580 ORTHO05D005917 2.7e-124 449.5 336 63.1
AL6G41550 Arabidopsis lyrata HOM05D004580 ORTHO05D005917 3.5e-124 449.1 352 61.9
CiPaw.07G178200 Carya illinoinensis HOM05D004580 ORTHO05D005917 4.6e-124 448.7 345 61.7
Gorai.010G039500 Gossypium raimondii HOM05D004580 ORTHO05D005917 4.6e-124 448.7 339 62.8
Sabra05G0123100 Salix brachista HOM05D004580 ORTHO05D005917 4.6e-124 448.7 338 62.1
CANSAT25G2089 Cannabis sativa HOM05D004580 ORTHO05D005917 7.9e-124 448.0 346 62.4
Eucgr.B00032 Eucalyptus grandis HOM05D004580 ORTHO05D005917 1.3e-123 447.2 349 59.9
Gohir.A06G034900 Gossypium hirsutum HOM05D004580 ORTHO05D005917 1.8e-123 446.8 339 62.5
Medtr4g053370 Medicago truncatula HOM05D004580 ORTHO05D005917 1.8e-123 446.8 304 67.8
Potri.005G162900 Populus trichocarpa HOM05D004580 ORTHO05D005917 1.8e-123 446.8 342 61.1
Carub.0006s2756 Capsella rubella HOM05D004580 ORTHO05D005917 5.1e-123 445.3 352 61.1
FvH4_6g23990 Fragaria vesca HOM05D004580 ORTHO05D005917 5.1e-123 445.3 337 63.2
FAN14G1039 Fragaria x ananassa HOM05D004580 ORTHO05D005917 5.1e-123 445.3 337 63.2
Gohir.D06G035500 Gossypium hirsutum HOM05D004580 ORTHO05D005917 6.7e-123 444.9 339 62.5
TAR625G1360 Trochodendron aralioides HOM05D004580 ORTHO05D005917 6.7e-123 444.9 342 62.3
Aa31LG9G14650 Aethionema arabicum HOM05D004580 ORTHO05D005917 8.7e-123 444.5 352 61.1
CDE05G3003 Ceratophyllum demersum HOM05D004580 ORTHO05D005917 8.7e-123 444.5 337 61.7
Glyma.11G184601 Glycine max HOM05D004580 ORTHO05D005917 8.7e-123 444.5 342 62.3
PSO541G6503 Papaver somniferum HOM05D004580 ORTHO05D005917 1.1e-122 444.1 343 61.5
FAN05G1019 Fragaria x ananassa HOM05D004580 ORTHO05D005917 1.5e-122 443.7 345 61.7
Potri.002G099000 Populus trichocarpa HOM05D004580 ORTHO05D005917 2.5e-122 443.0 355 60.0
Dinv17643 Davidia involucrata HOM05D004580 ORTHO05D005917 3.3e-122 442.6 339 61.1
SMO329G0013 Selaginella moellendorffii HOM05D004580 ORTHO05D005917 7.4e-122 441.4 329 63.5
RcHm_v2.0_Chr7g0243401 Rosa chinensis HOM05D004580 ORTHO05D005917 9.7e-122 441.0 326 64.4
Prupe.1G521000 Prunus persica HOM05D004580 ORTHO05D005917 1.6e-121 440.3 347 62.0
Hund08631 Selenicereus undatus HOM05D004580 ORTHO05D005917 1.6e-121 440.3 363 60.1
TAR381G0740 Trochodendron aralioides HOM05D004580 ORTHO05D005917 1.6e-121 440.3 342 60.5
TWI12G1022 Tripterygium wilfordii HOM05D004580 ORTHO05D005917 2.2e-121 439.9 343 59.8
Duzib041G0230 Durio zibethinus HOM05D004580 ORTHO05D005917 3.7e-121 439.1 344 62.2
PGR031G1028 Punica granatum HOM05D004580 ORTHO05D005917 3.7e-121 439.1 342 60.5
Cpa.g.sc36.160 Carica papaya HOM05D004580 ORTHO05D005917 6.3e-121 438.3 313 64.2
MSTRG.13678 Avicennia marina HOM05D004580 ORTHO05D005917 8.2e-121 438.0 344 61.0
Lj3g0026440 Lotus japonicus HOM05D004580 ORTHO05D005917 8.2e-121 438.0 304 66.4
MD08G1227100 Malus domestica HOM05D004580 ORTHO05D005917 1.4e-120 437.2 347 60.5
MD15G1419400 Malus domestica HOM05D004580 ORTHO05D005917 1.4e-120 437.2 347 61.1
CARHR259970 Cardamine hirsuta HOM05D004580 ORTHO05D005917 1.8e-120 436.8 352 58.8
BraA03t12037Z Brassica rapa HOM05D004580 ORTHO05D005917 2.4e-120 436.4 335 61.2
Sp6g08660 Schrenkiella parvula HOM05D004580 ORTHO05D005917 2.4e-120 436.4 336 61.0
BcaC01g04745 Brassica carinata HOM05D004580 ORTHO05D005917 3.1e-120 436.0 336 60.1
ClCG08G011200 Citrullus lanatus HOM05D004580 ORTHO05D005917 3.1e-120 436.0 343 61.2
Sc10g0006870 Simmondsia chinensis HOM05D004580 ORTHO05D005917 3.1e-120 436.0 363 57.9
MSTRG.2066 Avicennia marina HOM05D004580 ORTHO05D005917 4.1e-120 435.6 334 61.1
CsaV3_2G029780 Cucumis sativus L. HOM05D004580 ORTHO05D005917 5.3e-120 435.3 348 60.9
BcaB01g02381 Brassica carinata HOM05D004580 ORTHO05D005917 6.9e-120 434.9 337 61.4
BcaB01g02835 Brassica carinata HOM05D004580 ORTHO05D005917 6.9e-120 434.9 337 61.4
Ca_19393_v3 Cicer arietinum L. HOM05D004580 ORTHO05D005917 9.0e-120 434.5 302 66.9
RcHm_v2.0_Chr1g0321971 Rosa chinensis HOM05D004580 ORTHO05D005917 9.0e-120 434.5 346 59.5
AUR62017729 Chenopodium quinoa HOM05D004580 ORTHO05D005917 1.2e-119 434.1 349 62.5
Psat7g188520 Pisum sativum HOM05D004580 ORTHO05D005917 1.2e-119 434.1 298 66.8
Migut.E00684 Erythranthe guttata HOM05D004580 ORTHO05D005917 1.5e-119 433.7 334 61.4
Nn5g30036 Nelumbo nucifera HOM05D004580 ORTHO05D005917 1.5e-119 433.7 346 59.8
A03p28330 Brassica napus HOM05D004580 ORTHO05D005917 2.6e-119 433.0 335 60.6
CSS0011251 Camellia sinensis var. sinensis HOM05D004580 ORTHO05D005917 2.6e-119 433.0 310 65.2
MELO3C011036.2 Cucumis melo HOM05D004580 ORTHO05D005917 2.6e-119 433.0 343 60.3
QL12p037342 Quercus lobata HOM05D004580 ORTHO05D005917 2.6e-119 433.0 298 65.8
ClCG11G014220 Citrullus lanatus HOM05D004580 ORTHO05D005917 4.5e-119 432.2 354 57.3
C03p34240 Brassica napus HOM05D004580 ORTHO05D005917 5.9e-119 431.8 335 60.0
BolC3t15733H Brassica oleracea HOM05D004580 ORTHO05D005917 5.9e-119 431.8 335 60.0
BcaB01g02823 Brassica carinata HOM05D004580 ORTHO05D005917 7.7e-119 431.4 337 60.8
Thhalv10028722m.g Eutrema salsugineum HOM05D004580 ORTHO05D005917 1.3e-118 430.6 337 60.2
Actinidia04333 Actinidia chinensis HOM05D004580 ORTHO05D005917 2.9e-118 429.5 348 59.8
ECA236G1081 Erigeron canadensis HOM05D004580 ORTHO05D005917 2.9e-118 429.5 340 60.9
C09p37760 Brassica napus HOM05D004580 ORTHO05D005917 3.8e-118 429.1 336 59.5
BolC9t56609H Brassica oleracea HOM05D004580 ORTHO05D005917 3.8e-118 429.1 336 59.5
CSS0039091 Camellia sinensis var. sinensis HOM05D004580 ORTHO05D005917 3.8e-118 429.1 336 62.5
Sabra02G0077800 Salix brachista HOM05D004580 ORTHO05D005917 3.8e-118 429.1 343 61.2
CSS0036827 Camellia sinensis var. sinensis HOM05D004580 ORTHO05D005917 5.0e-118 428.7 335 62.4
DCAR_023183 Daucus carota HOM05D004580 ORTHO05D005917 5.0e-118 428.7 341 61.6
MELO3C003564.2 Cucumis melo HOM05D004580 ORTHO05D005917 1.1e-117 427.6 354 57.9
Lsat_1_v5_gn_4_64561 Lactuca sativa HOM05D004580 ORTHO05D005917 1.1e-117 427.6 339 60.2
CsaV3_3G047600 Cucumis sativus L. HOM05D004580 ORTHO05D005917 1.9e-117 426.8 348 58.0
Nitab4.5_0013217g0010 Nicotiana tabacum HOM05D004580 ORTHO05D005917 1.9e-117 426.8 347 60.8
Lalb_Chr03g0028011 Lupinus albus HOM05D004580 ORTHO05D005917 3.2e-117 426.0 342 59.6
EL10Ac9g22979 Beta vulgaris HOM05D004580 ORTHO05D005917 5.5e-117 425.2 341 61.9
PSO781G0322 Papaver somniferum HOM05D004580 ORTHO05D005917 5.5e-117 425.2 343 57.7
Nitab4.5_0000069g0120 Nicotiana tabacum HOM05D004580 ORTHO05D005917 1.6e-116 423.7 347 60.5
HPP92_004278 Vanilla planifolia HOM05D004580 ORTHO05D005917 2.7e-116 422.9 345 60.6
DCAR_002598 Daucus carota HOM05D004580 ORTHO05D005917 3.6e-116 422.5 341 60.4
Oeu036766.1 Olea europaea HOM05D004580 ORTHO05D005917 4.6e-116 422.2 347 60.5
PGSC0003DMG402016396 Solanum tuberosum HOM05D004580 ORTHO05D005917 4.6e-116 422.2 348 60.1
Sopen01g003800 Solanum pennellii HOM05D004580 ORTHO05D005917 6.1e-116 421.8 348 60.3
SGA_v2.0_scaffold358G49840 Striga asiatica HOM05D004580 ORTHO05D005917 7.9e-116 421.4 324 60.2
vmacro15988 Vaccinium macrocarpon HOM05D004580 ORTHO05D005917 1.0e-115 421.0 350 58.0
HanXRQChr04g0124871 Helianthus annuus HOM05D004580 ORTHO05D005917 1.4e-115 420.6 345 58.8
Ah.01g012710 Amaranthus hybridus HOM05D004580 ORTHO05D005917 3.9e-115 419.1 337 60.8
Sed0008659 Sechium edule HOM05D004580 ORTHO05D005917 5.1e-115 418.7 316 59.8
FvH4_5g29380 Fragaria vesca HOM05D004580 ORTHO05D005917 2.0e-114 416.8 341 58.9
Lj3P847T35 Lonicera japonica HOM05D004580 ORTHO05D005917 2.0e-114 416.8 304 63.8
Solyc01g008280.4 Solanum lycopersicum HOM05D004580 ORTHO05D005917 3.3e-114 416.0 348 59.5
MBI02_g02175_MAGBIO Magnolia biondii HOM05D004580 ORTHO05D005917 5.7e-114 415.2 336 58.6
GSVIVG01009068001 Vitis vinifera HOM05D004580 ORTHO05D005917 1.3e-113 414.1 340 59.7
CBR_g45439 Chara braunii HOM05D004580 ORTHO05D005917 1.1e-112 411.0 355 57.2
PSO541G6453 Papaver somniferum HOM05D004580 ORTHO05D005917 1.8e-112 410.2 341 57.5
BcaC04g20934 Brassica carinata HOM05D004580 ORTHO05D005917 1.5e-111 407.1 336 57.7
Os06g0219800 Oryza sativa ssp. japonica HOM05D004580 ORTHO05D005917 1.5e-111 407.1 342 59.4
Zm00001eb372770 Zea mays HOM05D004580 ORTHO05D005917 7.7e-111 404.8 343 60.1
Rhsim09G0069400 Rhododendron simsii HOM05D004580 ORTHO05D005917 1.0e-107 394.4 353 56.9
Nn1g05417 Nelumbo nucifera HOM05D004580 ORTHO05D005917 2.8e-105 386.3 310 59.0
HPP92_016361 Vanilla planifolia HOM05D004580 ORTHO05D005917 1.8e-104 383.6 340 55.6
Gorai.009G235200 Gossypium raimondii HOM05D004580 ORTHO05D005917 1.0e-102 377.9 314 58.9
SHI33348 Sapria himalayana HOM05D004580 ORTHO05D005917 1.7e-102 377.1 337 53.7
Gohir.D05G227500 Gossypium hirsutum HOM05D004580 ORTHO05D005917 2.2e-102 376.7 256 67.2
Peaxi162Scf00021g02317 Petunia axillaris HOM05D004580 ORTHO05D005917 2.3e-99 366.7 346 55.5
Gohir.A05G224950 Gossypium hirsutum HOM05D004580 ORTHO05D005917 1.6e-92 344.0 305 57.4
Glyma.12G087751 Glycine max HOM05D004580 ORTHO05D005917 1.4e-91 340.9 199 78.9
FAN18G2046 Fragaria x ananassa HOM05D004580 ORTHO05D005917 1.8e-91 340.5 295 55.9
SEGI_19435 Sequoiadendron giganteum HOM05D004580 ORTHO05D005917 1.5e-90 337.4 250 64.0
unitig_8.g3592 Utricularia gibba HOM05D004580 ORTHO05D005917 7.5e-90 335.1 198 75.8
TPR.G17228 Trifolium pratense HOM05D004580 ORTHO05D005917 4.1e-88 329.3 313 54.3
FAN02G1810 Fragaria x ananassa HOM05D004580 ORTHO05D005917 7.0e-88 328.6 198 76.3
Lalb_Chr19g0136591 Lupinus albus HOM05D004580 ORTHO05D005917 3.4e-82 309.7 342 48.5
Cre13.g580650 Chlamydomonas reinhardtii HOM05D004580 ORTHO05D005917 4.5e-79 299.3 392 41.8
CAN.G282.45 Capsicum annuum HOM05D004580 ORTHO05D005917 2.1e-76 290.4 231 61.9
BraA09t38542Z Brassica rapa HOM05D004580 ORTHO05D005917 3.6e-76 289.7 219 63.9
A09p29790 Brassica napus HOM05D004580 ORTHO05D005917 8.0e-76 288.5 177 74.6
MCO01G633 Micromonas commoda HOM05D004580 ORTHO05D005917 5.6e-69 265.8 302 44.7
PRCOL_00005481 Prasinoderma coloniale HOM05D004580 ORTHO05D005917 5.6e-69 265.8 341 40.8
FAN24G1342 Fragaria x ananassa HOM05D004580 ORTHO05D005917 2.3e-62 243.8 229 54.6
Cfa021829 Carpinus fangiana HOM05D004580 ORTHO05D011646 4.7e-60 236.1 363 37.5
Aqoxy6G00748 Aquilegia oxysepala HOM05D004580 ORTHO05D005917 2.0e-58 230.7 220 50.5
FvH4_2g11953 Fragaria vesca HOM05D004580 ORTHO05D000007 4.1e-56 223.0 221 51.6
Cfa001645 Carpinus fangiana HOM05D004580 ORTHO05D020348 3.5e-55 219.9 361 38.2
CDE05G0498 Ceratophyllum demersum HOM05D004580 ORTHO05D005917 5.8e-50 202.6 203 47.8
GSVIVG01009057001 Vitis vinifera HOM05D004580 ORTHO05D005917 6.4e-41 172.6 125 68.0
FAN24G1075 Fragaria x ananassa HOM05D004580 ORTHO05D005917 8.7e-30 135.6 148 50.0
Oeu013193.1 Olea europaea HOM05D004580 ORTHO05D005917 3.3e-29 133.7 181 38.1
Nn3g16512 Nelumbo nucifera HOM05D004580 ORTHO05D005917 4.2e-24 116.7 64 82.8
Cfa014845 Carpinus fangiana HOM05D000016 ORTHO05D000725 9.0e-19 99.0 105 44.8
Nn5g29558 Nelumbo nucifera HOM05D004580 ORTHO05D005917 5.5e-16 89.7 117 38.5
FvH4_4g06652 Fragaria vesca HOM05D004580 ORTHO05D000031 2.7e-15 87.4 55 72.7


User provided reference genes

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