Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c1_41500 Physcomitrium patens HOM05D003071 ORTHO05D316991 5.9e-204 714.5 414 100.0
Pp3c19_4390 Physcomitrium patens HOM05D001158 ORTHO05D000964 1.1e-24 119.0 130 40.0
Mapoly0021s0067 Marchantia polymorpha HOM05D001158 ORTHO05D000964 5.2e-19 100.1 218 32.1
AagrBONN_evm.TU.Sc2ySwM_340.175 Anthoceros agrestis HOM05D001158 ORTHO05D000964 3.7e-17 94.0 188 33.0
SMO147G0403 Selaginella moellendorffii HOM05D001158 ORTHO05D000964 3.0e-14 84.3 125 32.8
Mapoly0021s0033 Marchantia polymorpha HOM05D001158 ORTHO05D000964 5.6e-13 80.1 134 32.1
Pp3c3_32270 Physcomitrium patens HOM05D003071 ORTHO05D000964 7.3e-13 79.7 131 31.3
Pp3c12_12080 Physcomitrium patens HOM05D003071 ORTHO05D000964 8.1e-12 76.3 131 30.5
RcHm_v2.0_Chr7g0198691 Rosa chinensis HOM05D001158 ORTHO05D000964 8.1e-12 76.3 125 35.2
FAN04G0969 Fragaria x ananassa HOM05D001158 ORTHO05D000964 2.4e-11 74.7 125 32.8
DCAR_022000 Daucus carota HOM05D003071 ORTHO05D003641 4.0e-11 73.9 128 32.0
FvH4_5g01841 Fragaria vesca HOM05D001158 ORTHO05D000964 4.0e-11 73.9 125 32.8
FAN08G0932 Fragaria x ananassa HOM05D001158 ORTHO05D000964 5.2e-11 73.6 125 32.8
ATR0006G017 Amborella trichopoda HOM05D003071 ORTHO05D003641 8.9e-11 72.8 119 33.6
MD01G1048900 Malus domestica HOM05D001158 ORTHO05D000964 1.2e-10 72.4 125 29.6
Prupe.5G094600 Prunus persica HOM05D001158 ORTHO05D000964 1.5e-10 72.0 125 32.8
Sed0025200 Sechium edule HOM05D003071 ORTHO05D003641 2.0e-10 71.6 126 32.5
Sopen10g007070 Solanum pennellii HOM05D001158 ORTHO05D000964 3.4e-10 70.9 131 29.8
Sopen10g007080 Solanum pennellii HOM05D001158 ORTHO05D000964 3.4e-10 70.9 131 28.2
PGSC0003DMG400026887 Solanum tuberosum HOM05D001158 ORTHO05D000964 5.8e-10 70.1 131 29.8
MELO3C018475.2 Cucumis melo HOM05D003071 ORTHO05D003641 1.3e-09 68.9 125 32.0
ClCG02G006210 Citrullus lanatus HOM05D003071 ORTHO05D003641 1.7e-09 68.6 125 32.0
CsaV3_7G008320 Cucumis sativus L. HOM05D003071 ORTHO05D003641 2.2e-09 68.2 125 32.0
Sabra02G0123400 Salix brachista HOM05D001158 ORTHO05D000964 2.2e-09 68.2 125 31.2
Nn1g08103 Nelumbo nucifera HOM05D003071 ORTHO05D003641 4.9e-09 67.0 126 31.0
Sed0005673 Sechium edule HOM05D003071 ORTHO05D003641 4.9e-09 67.0 191 26.2
PGSC0003DMG400019943 Solanum tuberosum HOM05D001158 ORTHO05D000964 4.9e-09 67.0 126 32.5
AUR62010270 Chenopodium quinoa HOM05D003071 ORTHO05D003641 6.4e-09 66.6 125 30.4
Mapoly0188s0003 Marchantia polymorpha HOM05D003071 ORTHO05D003641 6.4e-09 66.6 119 30.3
Solyc10g018060.2 Solanum lycopersicum HOM05D001158 ORTHO05D000964 6.4e-09 66.6 124 30.6
Sopen10g007100 Solanum pennellii HOM05D001158 ORTHO05D000964 6.4e-09 66.6 124 30.6
Atru.chr9.457 Acer truncatum HOM05D003071 ORTHO05D003641 8.4e-09 66.2 119 31.1
AagrBONN_evm.TU.Sc2ySwM_340.178 Anthoceros agrestis HOM05D001158 ORTHO05D000964 8.4e-09 66.2 117 33.3
Dinv43775 Davidia involucrata HOM05D001158 ORTHO05D000964 8.4e-09 66.2 125 29.6
HPP92_015276 Vanilla planifolia HOM05D003071 ORTHO05D003641 8.4e-09 66.2 127 30.7
Atru.chr5.2596 Acer truncatum HOM05D003071 ORTHO05D003641 1.1e-08 65.9 119 30.3
EL10Ac9g22308 Beta vulgaris HOM05D003071 ORTHO05D003641 1.1e-08 65.9 119 31.9
CAN.G1231.18 Capsicum annuum HOM05D003071 ORTHO05D003641 1.9e-08 65.1 125 30.4
Potri.002G155600 Populus trichocarpa HOM05D001158 ORTHO05D000964 1.9e-08 65.1 125 31.2
Actinidia17881 Actinidia chinensis HOM05D003071 ORTHO05D003641 2.4e-08 64.7 209 26.8
Aqoxy7G00386 Aquilegia oxysepala HOM05D001158 ORTHO05D000964 2.4e-08 64.7 123 29.3
Nn3g20125 Nelumbo nucifera HOM05D003071 ORTHO05D003641 2.4e-08 64.7 118 30.5
Phvul.002G286900 Phaseolus vulgaris HOM05D001158 ORTHO05D000964 2.4e-08 64.7 124 29.0
Actinidia38303 Actinidia chinensis HOM05D001158 ORTHO05D000964 3.2e-08 64.3 125 29.6
PGR142G1514 Punica granatum HOM05D003071 ORTHO05D003641 3.2e-08 64.3 125 29.6
Pp3c9_16970 Physcomitrium patens HOM05D003071 ORTHO05D003641 4.2e-08 63.9 119 33.6
Hund06325 Selenicereus undatus HOM05D003071 ORTHO05D003641 4.2e-08 63.9 127 29.1
CAN.G859.6 Capsicum annuum HOM05D001158 ORTHO05D000964 5.4e-08 63.5 125 28.8
Cfa021169 Carpinus fangiana HOM05D003071 ORTHO05D003641 5.4e-08 63.5 125 28.8
VMungo0251G1334 Vigna mungo HOM05D001158 ORTHO05D000964 5.4e-08 63.5 135 26.7
CSS0003976 Camellia sinensis var. sinensis HOM05D003071 ORTHO05D003641 7.1e-08 63.2 128 28.9
Cpa.g.sc200.14 Carica papaya HOM05D003071 ORTHO05D003641 7.1e-08 63.2 125 28.8
MD05G1087200 Malus domestica HOM05D003071 ORTHO05D003641 7.1e-08 63.2 125 28.0
Potri.001G301900 Populus trichocarpa HOM05D003071 ORTHO05D003641 7.1e-08 63.2 119 30.3
TPR.G12096 Trifolium pratense HOM05D001158 ORTHO05D000964 7.1e-08 63.2 124 30.6
AagrBONN_evm.TU.Sc2ySwM_340.177 Anthoceros agrestis HOM05D001158 ORTHO05D000964 9.3e-08 62.8 116 31.9
ECA240G3211 Erigeron canadensis HOM05D003071 ORTHO05D003641 9.3e-08 62.8 123 28.5
PSO170G0220 Papaver somniferum HOM05D003071 ORTHO05D003641 9.3e-08 62.8 119 31.1
SGA_v2.0_scaffold43G16448 Striga asiatica HOM05D001158 ORTHO05D000964 9.3e-08 62.8 125 28.8
Atru.chr12.437 Acer truncatum HOM05D001158 ORTHO05D000964 1.2e-07 62.4 134 28.4
CSS0037575 Camellia sinensis var. sinensis HOM05D003071 ORTHO05D003641 1.2e-07 62.4 125 29.6
CiPaw.05G009500 Carya illinoinensis HOM05D003071 ORTHO05D003641 1.2e-07 62.4 125 28.8
Medtr1g008950 Medicago truncatula HOM05D001158 ORTHO05D000964 1.2e-07 62.4 124 30.6
Sabra16G0190000 Salix brachista HOM05D003071 ORTHO05D003641 1.2e-07 62.4 119 30.3
Solyc01g107740.3 Solanum lycopersicum HOM05D003071 ORTHO05D003641 1.2e-07 62.4 125 28.8
HanXRQChr16g0510001 Helianthus annuus HOM05D003071 ORTHO05D003641 1.6e-07 62.0 120 29.2
Lsat_1_v5_gn_0_4121 Lactuca sativa HOM05D003071 ORTHO05D003641 1.6e-07 62.0 120 29.2
Manes.02G025000 Manihot esculenta HOM05D001158 ORTHO05D000964 1.6e-07 62.0 133 30.1
PGR031G1423 Punica granatum HOM05D003071 ORTHO05D003641 1.6e-07 62.0 127 29.1
GSVIVG01019850001 Vitis vinifera HOM05D001158 ORTHO05D000964 1.6e-07 62.0 125 30.4
CBR_g36985 Chara braunii HOM05D003071 ORTHO05D003641 2.1e-07 61.6 123 28.5
Dinv03041 Davidia involucrata HOM05D001158 ORTHO05D000964 2.1e-07 61.6 135 30.4
PSO210G2766 Papaver somniferum HOM05D003071 ORTHO05D003641 2.1e-07 61.6 119 30.3
TWI79G1016 Tripterygium wilfordii HOM05D003071 ORTHO05D003641 2.1e-07 61.6 125 30.4
MSTRG.20176 Avicennia marina HOM05D003071 ORTHO05D003641 2.7e-07 61.2 127 29.9
COL.COLO4_32616 Corchorus olitorius HOM05D003071 ORTHO05D003641 2.7e-07 61.2 119 30.3
Gohir.A01G007600 Gossypium hirsutum HOM05D003071 ORTHO05D003641 2.7e-07 61.2 119 29.4
Gohir.D01G007700 Gossypium hirsutum HOM05D003071 ORTHO05D003641 2.7e-07 61.2 119 29.4
MBI16_g12378_MAGBIO Magnolia biondii HOM05D003071 ORTHO05D003641 2.7e-07 61.2 119 30.3
Manes.10G077400 Manihot esculenta HOM05D003071 ORTHO05D003641 2.7e-07 61.2 125 29.6
Psat6g005920 Pisum sativum HOM05D001158 ORTHO05D000964 2.7e-07 61.2 124 33.1
QL02p072870 Quercus lobata HOM05D003071 ORTHO05D003641 2.7e-07 61.2 125 28.8
QL11p034267 Quercus lobata HOM05D003071 ORTHO05D003641 2.7e-07 61.2 125 28.8
Sopen01g049920 Solanum pennellii HOM05D003071 ORTHO05D003641 2.7e-07 61.2 119 29.4
CANSAT25G2199 Cannabis sativa HOM05D003071 ORTHO05D003641 3.5e-07 60.8 125 28.0
Cfa004559 Carpinus fangiana HOM05D003071 ORTHO05D003641 3.5e-07 60.8 125 29.6
Haze_10149 Corylus avellana HOM05D003071 ORTHO05D003641 4.6e-07 60.5 125 30.4
Hma1.2p1_0796F.1_g219040 Hydrangea macrophylla HOM05D003071 ORTHO05D003641 4.6e-07 60.5 119 30.3
ECA236G3143 Erigeron canadensis HOM05D003071 ORTHO05D003641 6.0e-07 60.1 129 27.1
Phvul.002G053900 Phaseolus vulgaris HOM05D003071 ORTHO05D003641 6.0e-07 60.1 119 29.4
PGSC0003DMG402025869 Solanum tuberosum HOM05D003071 ORTHO05D003641 6.0e-07 60.1 125 29.6
VMungo1215G2306 Vigna mungo HOM05D003071 ORTHO05D003641 6.0e-07 60.1 119 29.4
Haze_15201 Corylus avellana HOM05D001158 ORTHO05D000964 7.8e-07 59.7 125 28.0
HanXRQChr03g0070191 Helianthus annuus HOM05D003071 ORTHO05D003641 7.8e-07 59.7 120 28.3
PSO541G2166 Papaver somniferum HOM05D003071 ORTHO05D003641 7.8e-07 59.7 119 29.4
PSO675G7902 Papaver somniferum HOM05D003071 ORTHO05D003641 7.8e-07 59.7 120 29.2
HPP92_001499 Vanilla planifolia HOM05D005745 ORTHO05D006857 7.8e-07 59.7 124 29.8
Aqoxy5G03960 Aquilegia oxysepala HOM05D001158 ORTHO05D000964 1.0e-06 59.3 125 29.6
EL10Ac5g12762 Beta vulgaris HOM05D001158 ORTHO05D000964 1.0e-06 59.3 125 28.8
CiPaw.11G138800 Carya illinoinensis HOM05D001158 ORTHO05D000964 1.0e-06 59.3 125 28.8
Eucgr.I01113 Eucalyptus grandis HOM05D003071 ORTHO05D003641 1.0e-06 59.3 119 29.4
Medtr5g079880 Medicago truncatula HOM05D001158 ORTHO05D000964 1.0e-06 59.3 134 27.6
Glyma.11G000700 Glycine max HOM05D003071 ORTHO05D003641 1.3e-06 58.9 119 29.4
Lalb_Chr16g0376241 Lupinus albus HOM05D003071 ORTHO05D003641 1.3e-06 58.9 119 29.4
Os06g0638900 Oryza sativa ssp. japonica HOM05D003071 ORTHO05D003641 1.3e-06 58.9 84 34.5
unitig_0.g1229 Utricularia gibba HOM05D001158 ORTHO05D000964 1.3e-06 58.9 125 28.8
GSVIVG01003176001 Vitis vinifera HOM05D003071 ORTHO05D003641 1.3e-06 58.9 218 26.1
DCAR_029078 Daucus carota HOM05D000231 ORTHO05D003641 1.7e-06 58.5 83 34.9
Hma1.2p1_0953F.1_g241140 Hydrangea macrophylla HOM05D001158 ORTHO05D000964 1.7e-06 58.5 135 28.9
vmacro13322 Vaccinium macrocarpon HOM05D001158 ORTHO05D000964 1.7e-06 58.5 125 25.6
CANSAT21G1256 Cannabis sativa HOM05D001158 ORTHO05D000964 2.3e-06 58.2 134 29.1
AUR62013250 Chenopodium quinoa HOM05D003071 ORTHO05D003641 2.3e-06 58.2 119 27.7
HanXRQChr10g0302061 Helianthus annuus HOM05D003071 ORTHO05D003641 2.3e-06 58.2 125 27.2
Nn5g30392 Nelumbo nucifera HOM05D003071 ORTHO05D003641 2.3e-06 58.2 186 26.9
vmacro19518 Vaccinium macrocarpon HOM05D003071 ORTHO05D003641 2.3e-06 58.2 83 36.1
Ca_05893_v3 Cicer arietinum L. HOM05D001158 ORTHO05D000964 3.0e-06 57.8 134 28.4
ECA233G3582 Erigeron canadensis HOM05D000038 ORTHO05D009636 3.0e-06 57.8 121 27.3
Potri.002G123200 Populus trichocarpa HOM05D003071 ORTHO05D003641 3.0e-06 57.8 120 26.7
SEGI_24227 Sequoiadendron giganteum HOM05D001158 ORTHO05D000964 3.0e-06 57.8 122 27.0
HanXRQChr03g0070201 Helianthus annuus HOM05D003071 ORTHO05D003641 3.9e-06 57.4 120 27.5
TAR628G0589 Trochodendron aralioides HOM05D003071 ORTHO05D003641 3.9e-06 57.4 119 27.7
TAR628G1177 Trochodendron aralioides HOM05D003071 ORTHO05D003641 3.9e-06 57.4 119 27.7
DCAR_003613 Daucus carota HOM05D003071 ORTHO05D003641 5.1e-06 57.0 83 34.9
Gorai.002G008800 Gossypium raimondii HOM05D003071 ORTHO05D003641 5.1e-06 57.0 119 29.4
Hma1.2p1_0634F.1_g193010 Hydrangea macrophylla HOM05D003071 ORTHO05D003641 5.1e-06 57.0 118 29.7
Nitab4.5_0002815g0170 Nicotiana tabacum HOM05D001596 ORTHO05D002857 5.1e-06 57.0 115 28.7
Nitab4.5_0003486g0010 Nicotiana tabacum HOM05D001158 ORTHO05D000964 5.1e-06 57.0 100 30.0
Rhsim07G0019300 Rhododendron simsii HOM05D001158 ORTHO05D000964 5.1e-06 57.0 125 27.2
GSVIVG01009437001 Vitis vinifera HOM05D003071 ORTHO05D003641 5.1e-06 57.0 119 30.3
CSS0028507 Camellia sinensis var. sinensis HOM05D001158 ORTHO05D000964 6.6e-06 56.6 126 27.8
CiPaw.05G009600 Carya illinoinensis HOM05D003071 ORTHO05D003641 6.6e-06 56.6 126 28.6
RhsimUnG0060900 Rhododendron simsii HOM05D003071 ORTHO05D003641 6.6e-06 56.6 80 37.5
SGA_v2.0_scaffold225G43090 Striga asiatica HOM05D003071 ORTHO05D003641 6.6e-06 56.6 119 28.6
Oeu017475.1 Olea europaea HOM05D003071 ORTHO05D003641 8.7e-06 56.2 120 26.7
SalBow6G2089 Salvia bowleyana HOM05D003071 ORTHO05D003641 8.7e-06 56.2 83 34.9


User provided reference genes

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