Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c1_40240 Physcomitrium patens HOM05D006171 ORTHO05D007294 4.4e-192 674.5 343 100.0
Mapoly0047s0137 Marchantia polymorpha HOM05D006171 ORTHO05D007294 1.0e-116 424.1 283 73.1
Manes.11G069800 Manihot esculenta HOM05D006171 ORTHO05D007294 1.3e-111 407.1 267 73.4
CBR_g3722 Chara braunii HOM05D006171 ORTHO05D007294 1.9e-110 403.3 346 63.0
THA.LOC104812426 Tarenaya hassleriana HOM05D006171 ORTHO05D007294 4.2e-110 402.1 266 71.1
Nitab4.5_0002700g0080 Nicotiana tabacum HOM05D006171 ORTHO05D007294 6.0e-109 398.3 268 70.5
Potri.003G185754 Populus trichocarpa HOM05D006171 ORTHO05D007294 5.1e-108 395.2 270 71.1
Eucgr.F03988 Eucalyptus grandis HOM05D006171 ORTHO05D007294 6.7e-108 394.8 296 65.9
Cpa.g.sc95.67 Carica papaya HOM05D006171 ORTHO05D007294 8.7e-108 394.4 269 69.9
Potri.003G185501 Populus trichocarpa HOM05D006171 ORTHO05D007294 1.1e-107 394.0 270 70.7
PGR102G1595 Punica granatum HOM05D006171 ORTHO05D007294 1.1e-107 394.0 266 70.7
CAN.G1008.12 Capsicum annuum HOM05D006171 ORTHO05D007294 1.9e-107 393.3 270 69.3
Peaxi162Scf00314g01040 Petunia axillaris HOM05D006171 ORTHO05D007294 1.9e-107 393.3 286 66.8
A09p61030 Brassica napus HOM05D000031 ORTHO05D007294 2.5e-107 392.9 269 69.1
BraA09t41476Z Brassica rapa HOM05D000031 ORTHO05D007294 2.5e-107 392.9 269 69.1
Carub.0001s1588 Capsella rubella HOM05D006171 ORTHO05D007294 3.3e-107 392.5 269 69.1
CiPaw.01G256900 Carya illinoinensis HOM05D006171 ORTHO05D007294 4.3e-107 392.1 270 70.0
Thhalv10008259m.g Eutrema salsugineum HOM05D006171 ORTHO05D007294 4.3e-107 392.1 269 69.1
AL1G28240 Arabidopsis lyrata HOM05D006171 ORTHO05D007294 5.7e-107 391.7 269 69.1
Potri.001G040100 Populus trichocarpa HOM05D006171 ORTHO05D007294 5.7e-107 391.7 270 70.7
Atru.chr1.2816 Acer truncatum HOM05D006171 ORTHO05D007294 7.4e-107 391.3 270 70.0
ECA232G3902 Erigeron canadensis HOM05D006171 ORTHO05D007294 7.4e-107 391.3 268 69.0
Potri.003G185901 Populus trichocarpa HOM05D006171 ORTHO05D007294 9.7e-107 391.0 269 69.9
SMO356G0223 Selaginella moellendorffii HOM05D006171 ORTHO05D007294 9.7e-107 391.0 257 73.2
Sopen03g036650 Solanum pennellii HOM05D006171 ORTHO05D007294 9.7e-107 391.0 269 69.5
AT1G16080 Arabidopsis thaliana HOM05D006171 ORTHO05D007294 1.3e-106 390.6 269 68.8
PGSC0003DMG400014158 Solanum tuberosum HOM05D006171 ORTHO05D007294 1.6e-106 390.2 260 70.8
Thecc.06G048100 Theobroma cacao HOM05D006171 ORTHO05D007294 1.6e-106 390.2 269 70.3
Solyc03g117740.3 Solanum lycopersicum HOM05D006171 ORTHO05D007294 2.2e-106 389.8 269 69.1
Sabra03G0135700 Salix brachista HOM05D006171 ORTHO05D007294 2.8e-106 389.4 277 69.3
Gohir.D05G117900 Gossypium hirsutum HOM05D006171 ORTHO05D007294 3.7e-106 389.0 254 72.4
SalBow1G2136 Salvia bowleyana HOM05D006171 ORTHO05D007294 3.7e-106 389.0 265 69.8
Sp1g14390 Schrenkiella parvula HOM05D006171 ORTHO05D007294 3.7e-106 389.0 269 68.8
Nitab4.5_0004738g0050 Nicotiana tabacum HOM05D006171 ORTHO05D007294 4.8e-106 388.7 268 69.8
Rhsim12G0183500 Rhododendron simsii HOM05D006171 ORTHO05D007294 1.4e-105 387.1 254 71.7
C08p44630 Brassica napus HOM05D000031 ORTHO05D007294 1.8e-105 386.7 269 68.8
BolC8t52009H Brassica oleracea HOM05D000031 ORTHO05D007294 1.8e-105 386.7 269 68.8
Cfa001846 Carpinus fangiana HOM05D006171 ORTHO05D007294 1.8e-105 386.7 269 69.1
Actinidia36860 Actinidia chinensis HOM05D006171 ORTHO05D007294 2.4e-105 386.3 266 69.5
Nn2g12468 Nelumbo nucifera HOM05D006171 ORTHO05D007294 2.4e-105 386.3 289 67.1
BcaC05g25605 Brassica carinata HOM05D006171 ORTHO05D007294 3.1e-105 386.0 269 69.5
Ah.09g231760 Amaranthus hybridus HOM05D006171 ORTHO05D007294 4.1e-105 385.6 267 68.5
BolC5t30159H Brassica oleracea HOM05D006171 ORTHO05D007294 4.1e-105 385.6 269 69.1
Migut.D01148 Erythranthe guttata HOM05D006171 ORTHO05D007294 4.1e-105 385.6 279 66.7
Lj5C82T4 Lonicera japonica HOM05D006171 ORTHO05D007294 4.1e-105 385.6 272 68.0
Sc10g0006500 Simmondsia chinensis HOM05D006171 ORTHO05D007294 4.1e-105 385.6 270 69.6
BcaB02g06590 Brassica carinata HOM05D006171 ORTHO05D007294 5.3e-105 385.2 269 69.5
Lsat_1_v5_gn_4_84921 Lactuca sativa HOM05D006171 ORTHO05D007294 5.3e-105 385.2 270 67.4
unitig_62.g23820 Utricularia gibba HOM05D006171 ORTHO05D007294 9.0e-105 384.4 269 67.7
Ciclev10025944m.g Citrus clementina HOM05D006171 ORTHO05D007294 1.2e-104 384.0 269 70.3
MELO3C023482.2 Cucumis melo HOM05D006171 ORTHO05D007294 1.2e-104 384.0 268 69.0
CsaV3_7G031750 Cucumis sativus L. HOM05D006171 ORTHO05D007294 1.2e-104 384.0 268 69.0
Aqoxy7G02339 Aquilegia oxysepala HOM05D006171 ORTHO05D007294 2.0e-104 383.3 273 64.8
HPP92_021945 Vanilla planifolia HOM05D006171 ORTHO05D007294 2.6e-104 382.9 271 68.3
Aa31LG7G650 Aethionema arabicum HOM05D006171 ORTHO05D007294 3.4e-104 382.5 271 69.0
A06p12100 Brassica napus HOM05D006171 ORTHO05D007294 3.4e-104 382.5 269 68.8
Duzib235G0222 Durio zibethinus HOM05D006171 ORTHO05D007294 5.9e-104 381.7 269 69.1
TWI12G1342 Tripterygium wilfordii HOM05D006171 ORTHO05D007294 5.9e-104 381.7 261 69.0
ClCG09G003450 Citrullus lanatus HOM05D006171 ORTHO05D007294 7.7e-104 381.3 268 68.3
BraA06t24379Z Brassica rapa HOM05D006171 ORTHO05D007294 1.0e-103 380.9 269 68.8
RcHm_v2.0_Chr2g0132161 Rosa chinensis HOM05D006171 ORTHO05D007294 1.3e-103 380.6 261 69.3
Hund22405 Selenicereus undatus HOM05D006171 ORTHO05D007294 1.3e-103 380.6 327 60.9
SGA_v2.0_scaffold74G24604 Striga asiatica HOM05D006171 ORTHO05D007294 1.3e-103 380.6 253 70.4
MSTRG.9390 Avicennia marina HOM05D006171 ORTHO05D007294 2.2e-103 379.8 301 63.1
BcaB03g14506 Brassica carinata HOM05D000031 ORTHO05D007294 2.2e-103 379.8 270 67.4
vmacro16838 Vaccinium macrocarpon HOM05D006171 ORTHO05D007294 2.2e-103 379.8 250 72.0
C05p14280 Brassica napus HOM05D006171 ORTHO05D007294 2.9e-103 379.4 269 68.8
COL.COLO4_26789 Corchorus olitorius HOM05D006171 ORTHO05D007294 6.5e-103 378.3 253 71.5
CBR_g39222 Chara braunii HOM05D006171 ORTHO05D007294 1.1e-102 377.5 269 69.9
FvH4_6g28180 Fragaria vesca HOM05D006171 ORTHO05D007294 1.1e-102 377.5 270 67.8
FAN14G3270 Fragaria x ananassa HOM05D006171 ORTHO05D007294 1.4e-102 377.1 270 67.8
Prupe.3G104600 Prunus persica HOM05D006171 ORTHO05D007294 1.9e-102 376.7 261 68.6
CSS0034221 Camellia sinensis var. sinensis HOM05D006171 ORTHO05D007294 3.2e-102 375.9 269 68.4
FAN09G0753 Fragaria x ananassa HOM05D006171 ORTHO05D007294 3.2e-102 375.9 274 66.8
Oeu003115.1 Olea europaea HOM05D006171 ORTHO05D007294 3.2e-102 375.9 242 70.7
Oeu003116.1 Olea europaea HOM05D006171 ORTHO05D007294 3.2e-102 375.9 242 70.7
AUR62002650 Chenopodium quinoa HOM05D006171 ORTHO05D007294 5.5e-102 375.2 262 67.9
HanXRQChr16g0499501 Helianthus annuus HOM05D006171 ORTHO05D007294 9.4e-102 374.4 278 64.7
TAR626G1848 Trochodendron aralioides HOM05D006171 ORTHO05D007294 3.6e-101 372.5 267 66.3
GSVIVG01016093001 Vitis vinifera HOM05D006171 ORTHO05D007294 4.6e-101 372.1 242 71.1
Glyma.08G220900 Glycine max HOM05D006171 ORTHO05D007294 6.1e-101 371.7 280 64.6
MD09G1228700 Malus domestica HOM05D006171 ORTHO05D007294 7.9e-101 371.3 261 68.2
Potri.001G041140 Populus trichocarpa HOM05D006171 ORTHO05D007294 1.4e-100 370.5 270 68.5
Glyma.07G020900 Glycine max HOM05D006171 ORTHO05D007294 1.8e-100 370.2 283 64.0
arahy.Tifrunner.gnm1.ann1.B85C5A Arachis hypogaea HOM05D006171 ORTHO05D007294 6.7e-100 368.2 267 67.0
Lj3g0005429 Lotus japonicus HOM05D006171 ORTHO05D007294 6.7e-100 368.2 278 63.3
Zm00001eb177930 Zea mays HOM05D006171 ORTHO05D007294 6.7e-100 368.2 282 66.3
arahy.Tifrunner.gnm1.ann1.F1WQ27 Arachis hypogaea HOM05D006171 ORTHO05D007294 8.8e-100 367.9 267 67.0
Medtr4g007910 Medicago truncatula HOM05D006171 ORTHO05D007294 1.5e-99 367.1 267 65.5
Phvul.009G155700 Phaseolus vulgaris HOM05D006171 ORTHO05D007294 2.0e-99 366.7 269 64.7
CDE07G0158 Ceratophyllum demersum HOM05D006171 ORTHO05D007294 5.7e-99 365.2 269 65.1
VMungo1309G0227 Vigna mungo HOM05D006171 ORTHO05D007294 7.4e-99 364.8 269 63.9
Lalb_Chr25g0278721 Lupinus albus HOM05D006171 ORTHO05D007294 9.7e-99 364.4 264 68.2
Cc04_g05360 Coffea canephora HOM05D006171 ORTHO05D007294 1.7e-98 363.6 242 69.4
Phvul.008G253700 Phaseolus vulgaris HOM05D006171 ORTHO05D007294 3.1e-97 359.4 260 65.8
MBI14_g16440_MAGBIO Magnolia biondii HOM05D006171 ORTHO05D007294 4.1e-97 359.0 251 67.3
VMungo0647G1588 Vigna mungo HOM05D006171 ORTHO05D007294 6.9e-97 358.2 272 64.3
AUR62034059 Chenopodium quinoa HOM05D006171 ORTHO05D007294 1.2e-96 357.5 306 58.2
Psat7g260440 Pisum sativum HOM05D006171 ORTHO05D007294 3.4e-96 355.9 265 63.8
EL10Ac8g19420 Beta vulgaris HOM05D006171 ORTHO05D007294 7.4e-91 338.2 270 62.2
CSS0033272 Camellia sinensis var. sinensis HOM05D006171 ORTHO05D007294 9.7e-91 337.8 269 62.8
MCO15G666 Micromonas commoda HOM05D006171 ORTHO05D007294 1.4e-89 334.0 262 62.2
Gorai.009G121800 Gossypium raimondii HOM05D006171 ORTHO05D007294 1.6e-85 320.5 217 72.4
AagrBONN_evm.TU.Sc2ySwM_344.694 Anthoceros agrestis HOM05D006171 ORTHO05D007294 2.7e-85 319.7 281 61.6
Cre10.g435850 Chlamydomonas reinhardtii HOM05D006171 ORTHO05D007294 2.7e-85 319.7 266 60.9
PRCOL_00006061 Prasinoderma coloniale HOM05D006171 ORTHO05D007294 2.3e-84 316.6 243 62.6
Os08g0266300 Oryza sativa ssp. japonica HOM05D006171 ORTHO05D007294 5.7e-83 312.0 252 65.9
PSO017G5952 Papaver somniferum HOM05D006171 ORTHO05D007294 3.1e-81 306.2 191 74.3
PSO170G6342 Papaver somniferum HOM05D006171 ORTHO05D007294 1.6e-80 303.9 191 73.8
CANSAT64G1829 Cannabis sativa HOM05D006171 ORTHO05D007294 4.5e-80 302.4 191 73.3
ATR0580G215 Amborella trichopoda HOM05D006171 ORTHO05D007294 4.2e-78 295.8 189 72.0
FAN05G3051 Fragaria x ananassa HOM05D006171 ORTHO05D007294 1.0e-76 291.2 246 63.0
MD17G1227100 Malus domestica HOM05D006171 ORTHO05D007294 1.4e-76 290.8 189 71.4
HanXRQChr16g0499491 Helianthus annuus HOM05D006171 ORTHO05D007294 3.4e-75 286.2 264 53.4
Dinv21434 Davidia involucrata HOM05D006171 ORTHO05D007294 1.7e-74 283.9 201 70.6
QL05p037111 Quercus lobata HOM05D006171 ORTHO05D007294 8.5e-71 271.6 190 70.5
Gohir.A05G117000 Gossypium hirsutum HOM05D006171 ORTHO05D007294 2.7e-69 266.5 173 74.6
Aqoxy6G02563 Aquilegia oxysepala HOM05D006171 ORTHO05D007294 8.6e-55 218.4 256 46.5
Hma1.2p1_2173F.1_g316040 Hydrangea macrophylla HOM05D006171 ORTHO05D007294 3.3e-54 216.5 210 55.7
RcHm_v2.0_Chr2g0132191 Rosa chinensis HOM05D006171 ORTHO05D007294 2.1e-53 213.8 190 57.9
Rhsim12G0183600 Rhododendron simsii HOM05D006171 ORTHO05D007294 3.4e-51 206.5 254 46.9
Sed0008158 Sechium edule HOM05D006171 ORTHO05D007294 1.9e-46 190.7 144 66.0
AagrBONN_evm.TU.Sc2ySwM_344.1199 Anthoceros agrestis HOM05D006171 ORTHO05D007294 7.6e-35 152.1 275 36.4
QL05p037113 Quercus lobata HOM05D006171 ORTHO05D007294 9.9e-27 125.2 82 67.1
Cre03.g167050 Chlamydomonas reinhardtii HOM05D006171 ORTHO05D007294 4.9e-26 122.9 324 30.2
CDE04G3654 Ceratophyllum demersum HOM05D006171 ORTHO05D007294 6.4e-26 122.5 128 50.8
SEGI_00638 Sequoiadendron giganteum HOM05D006171 ORTHO05D007294 1.0e-23 115.2 65 84.6
PRCOL_00003410 Prasinoderma coloniale HOM05D006171 ORTHO05D007294 2.1e-21 107.5 289 33.9
arahy.Tifrunner.gnm1.ann1.VYJR5C Arachis hypogaea HOM05D006171 ORTHO05D007294 6.4e-10 69.3 91 47.3
RcHm_v2.0_Chr2g0132221 Rosa chinensis HOM05D006171 ORTHO05D007294 8.4e-10 68.9 66 50.0


User provided reference genes

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