Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c1_39830 Physcomitrium patens HOM05D006853 ORTHO05D008906 1.8e-148 529.3 269 100.0
Mapoly0008s0082 Marchantia polymorpha HOM05D006853 ORTHO05D008906 5.0e-58 228.8 282 44.3
SEGI_13208 Sequoiadendron giganteum HOM05D006853 ORTHO05D008906 1.7e-53 213.8 264 42.4
SMO164G0046 Selaginella moellendorffii HOM05D006853 ORTHO05D008906 1.3e-50 204.1 273 43.2
Aqoxy5G01341 Aquilegia oxysepala HOM05D006853 ORTHO05D008906 8.5e-42 174.9 233 42.9
BcaB07g30269 Brassica carinata HOM05D006853 ORTHO05D008906 2.5e-41 173.3 234 39.3
PSO541G5551 Papaver somniferum HOM05D006853 ORTHO05D008906 2.7e-40 169.9 252 39.3
Sed0015072 Sechium edule HOM05D006853 ORTHO05D008906 2.7e-40 169.9 245 39.6
C02p52120 Brassica napus HOM05D006853 ORTHO05D008906 8.0e-40 168.3 240 37.5
BolC2t11296H Brassica oleracea HOM05D006853 ORTHO05D008906 8.0e-40 168.3 240 37.5
PSO675G5986 Papaver somniferum HOM05D006853 ORTHO05D008906 2.3e-39 166.8 252 38.9
MELO3C005171.2 Cucumis melo HOM05D006853 ORTHO05D008906 5.2e-39 165.6 246 41.1
AagrBONN_evm.TU.Sc2ySwM_368.2648 Anthoceros agrestis HOM05D006853 ORTHO05D008906 8.8e-39 164.9 216 40.3
Nn7g37287 Nelumbo nucifera HOM05D006853 ORTHO05D008906 1.2e-38 164.5 235 42.1
Hund25134 Selenicereus undatus HOM05D006853 ORTHO05D008906 1.2e-38 164.5 236 40.7
BcaC03g17267 Brassica carinata HOM05D006853 ORTHO05D008906 1.5e-38 164.1 238 37.0
BcaC03g17268 Brassica carinata HOM05D006853 ORTHO05D008906 1.5e-38 164.1 238 37.0
AUR62007823 Chenopodium quinoa HOM05D006853 ORTHO05D008906 1.5e-38 164.1 238 37.8
Thhalv10004778m.g Eutrema salsugineum HOM05D006853 ORTHO05D008906 1.5e-38 164.1 236 37.7
ECA233G2927 Erigeron canadensis HOM05D006853 ORTHO05D006634 2.0e-38 163.7 232 39.2
CsaV3_5G018880 Cucumis sativus L. HOM05D006853 ORTHO05D008906 3.4e-38 162.9 238 40.3
ClCG01G007410 Citrullus lanatus HOM05D006853 ORTHO05D008906 4.4e-38 162.5 250 39.6
Ah.02g127470 Amaranthus hybridus HOM05D001046 ORTHO05D002934 7.5e-38 161.8 238 39.1
CiPaw.06G096100 Carya illinoinensis HOM05D006853 ORTHO05D008906 9.8e-38 161.4 239 42.3
Nitab4.5_0010998g0020 Nicotiana tabacum HOM05D006853 ORTHO05D008906 2.8e-37 159.8 274 38.0
Carub.0005s0328 Capsella rubella HOM05D006853 ORTHO05D008906 3.7e-37 159.5 271 35.4
CAN.G184.17 Capsicum annuum HOM05D006853 ORTHO05D008906 3.7e-37 159.5 270 36.3
CARHR146460 Cardamine hirsuta HOM05D006853 ORTHO05D008906 3.7e-37 159.5 233 36.1
Atru.chr11.1459 Acer truncatum HOM05D006853 ORTHO05D008906 4.8e-37 159.1 266 37.6
Atru.chr11.1493 Acer truncatum HOM05D006853 ORTHO05D008906 4.8e-37 159.1 266 37.6
BcaB07g30639 Brassica carinata HOM05D006853 ORTHO05D008906 4.8e-37 159.1 238 35.3
Nitab4.5_0000027g0460 Nicotiana tabacum HOM05D006853 ORTHO05D008906 4.8e-37 159.1 274 37.2
SalBow8G0220 Salvia bowleyana HOM05D006853 ORTHO05D008906 4.8e-37 159.1 270 34.8
Lsat_1_v5_gn_8_37640 Lactuca sativa HOM05D006853 ORTHO05D008906 6.3e-37 158.7 231 39.8
Peaxi162Scf00188g00063 Petunia axillaris HOM05D006853 ORTHO05D008906 6.3e-37 158.7 238 40.3
QL03p047845 Quercus lobata HOM05D006853 ORTHO05D008906 6.3e-37 158.7 235 40.0
Cc11_g11200 Coffea canephora HOM05D006853 ORTHO05D008906 1.1e-36 157.9 272 37.5
PGSC0003DMG400025119 Solanum tuberosum HOM05D006853 ORTHO05D008906 1.1e-36 157.9 237 38.8
Sp2g14810 Schrenkiella parvula HOM05D006853 ORTHO05D008906 1.4e-36 157.5 236 36.9
Aa31LG2G6790 Aethionema arabicum HOM05D006853 ORTHO05D008906 4.1e-36 156.0 241 36.5
Hma1.2p1_0762F.1_g214380 Hydrangea macrophylla HOM05D006853 ORTHO05D008906 4.1e-36 156.0 225 39.6
SalBow8G1387 Salvia bowleyana HOM05D006853 ORTHO05D008906 4.1e-36 156.0 270 34.4
FvH4_4g28700 Fragaria vesca HOM05D006853 ORTHO05D008906 9.1e-36 154.8 229 38.0
FAN12G0570 Fragaria x ananassa HOM05D006853 ORTHO05D008906 9.1e-36 154.8 229 38.0
Actinidia31918 Actinidia chinensis HOM05D006853 ORTHO05D006634 1.2e-35 154.5 237 39.2
Solyc05g010290.3 Solanum lycopersicum HOM05D006853 ORTHO05D008906 1.2e-35 154.5 237 38.4
Eucgr.B03092 Eucalyptus grandis HOM05D006853 ORTHO05D008906 1.6e-35 154.1 239 38.9
Oeu024136.2 Olea europaea HOM05D006853 ORTHO05D008906 2.0e-35 153.7 270 35.2
Sopen05g006060 Solanum pennellii HOM05D006853 ORTHO05D008906 2.0e-35 153.7 237 38.0
AT3G25545 Arabidopsis thaliana HOM05D006853 ORTHO05D008906 2.7e-35 153.3 237 35.0
HanXRQChr08g0214781 Helianthus annuus HOM05D006853 ORTHO05D008906 2.7e-35 153.3 231 39.4
HanXRQChr15g0469081 Helianthus annuus HOM05D006853 ORTHO05D008906 2.7e-35 153.3 217 39.6
Lj6P771T55 Lonicera japonica HOM05D006853 ORTHO05D008906 2.7e-35 153.3 218 39.4
TAR624G1108 Trochodendron aralioides HOM05D006853 ORTHO05D008906 3.5e-35 152.9 232 37.5
Ciclev10032464m.g Citrus clementina HOM05D006853 ORTHO05D008906 4.5e-35 152.5 232 39.2
Oeu054577.1 Olea europaea HOM05D006853 ORTHO05D008906 4.5e-35 152.5 272 36.4
PGR102G0342 Punica granatum HOM05D006853 ORTHO05D008906 5.9e-35 152.1 239 37.7
AL5G14010 Arabidopsis lyrata HOM05D006853 ORTHO05D008906 7.7e-35 151.8 238 35.3
TWI31G0390 Tripterygium wilfordii HOM05D006853 ORTHO05D008906 1.3e-34 151.0 238 39.1
Potri.010G134600 Populus trichocarpa HOM05D006853 ORTHO05D008906 1.7e-34 150.6 239 39.7
CSS0003455 Camellia sinensis var. sinensis HOM05D006853 ORTHO05D008906 2.3e-34 150.2 232 39.7
Rhsim09G0117300 Rhododendron simsii HOM05D006853 ORTHO05D008906 2.3e-34 150.2 239 35.6
Thecc.02G317700 Theobroma cacao HOM05D006853 ORTHO05D008906 2.9e-34 149.8 238 37.8
A02p33840 Brassica napus HOM05D006853 ORTHO05D008906 3.8e-34 149.4 239 35.1
Cpa.g.sc53.10 Carica papaya HOM05D006853 ORTHO05D008906 5.0e-34 149.1 239 36.4
FAN07G1226 Fragaria x ananassa HOM05D006853 ORTHO05D006634 6.5e-34 148.7 229 36.7
Oeu054573.1 Olea europaea HOM05D006853 ORTHO05D008906 6.5e-34 148.7 272 35.7
Oeu054575.1 Olea europaea HOM05D006853 ORTHO05D008906 6.5e-34 148.7 272 35.7
Potri.008G110700 Populus trichocarpa HOM05D006853 ORTHO05D008906 6.5e-34 148.7 239 38.9
RcHm_v2.0_Chr4g0436821 Rosa chinensis HOM05D006853 ORTHO05D008906 8.6e-34 148.3 216 38.0
Sc11g0002760 Simmondsia chinensis HOM05D006853 ORTHO05D008906 1.1e-33 147.9 237 35.9
CANSAT64G2393 Cannabis sativa HOM05D006853 ORTHO05D008906 1.5e-33 147.5 237 37.6
CSS0047872 Camellia sinensis var. sinensis HOM05D006853 ORTHO05D008906 1.9e-33 147.1 238 36.1
Cfa009867 Carpinus fangiana HOM05D006853 ORTHO05D008906 2.5e-33 146.7 238 37.0
Migut.L01132 Erythranthe guttata HOM05D006853 ORTHO05D006634 2.5e-33 146.7 237 35.9
BraA02t08402Z Brassica rapa HOM05D006853 ORTHO05D008906 3.2e-33 146.4 239 34.7
Duzib268G1722 Durio zibethinus HOM05D006853 ORTHO05D008906 3.2e-33 146.4 238 37.8
Gohir.A03G107900 Gossypium hirsutum HOM05D006853 ORTHO05D008906 3.2e-33 146.4 238 34.9
Manes.06G077700 Manihot esculenta HOM05D006853 ORTHO05D008906 3.2e-33 146.4 239 39.7
THA.LOC104801842 Tarenaya hassleriana HOM05D006853 ORTHO05D008906 3.2e-33 146.4 275 31.6
COL.COLO4_27747 Corchorus olitorius HOM05D006853 ORTHO05D008906 4.2e-33 146.0 238 36.1
ATR0721G025 Amborella trichopoda HOM05D006853 ORTHO05D008906 5.5e-33 145.6 241 34.9
Gohir.D02G132900 Gossypium hirsutum HOM05D006853 ORTHO05D008906 7.2e-33 145.2 238 34.9
MD13G1053100 Malus domestica HOM05D006853 ORTHO05D008906 9.5e-33 144.8 236 35.2
Haze_23238 Corylus avellana HOM05D006853 ORTHO05D008906 1.2e-32 144.4 239 36.8
Prupe.1G299000 Prunus persica HOM05D006853 ORTHO05D006634 3.6e-32 142.9 241 36.9
MSTRG.7709 Avicennia marina HOM05D006853 ORTHO05D008906 6.1e-32 142.1 271 33.2
MD16G1052100 Malus domestica HOM05D006853 ORTHO05D008906 8.0e-32 141.7 236 35.6
Sabra10G0103400 Salix brachista HOM05D006853 ORTHO05D008906 1.8e-31 140.6 239 38.1
unitig_8.g3212 Utricularia gibba HOM05D006853 ORTHO05D008906 5.7e-30 135.6 236 37.3
SGA_v2.0_scaffold16G07849 Striga asiatica HOM05D006853 ORTHO05D008906 3.7e-29 132.9 266 33.1
HPP92_020023 Vanilla planifolia HOM05D006853 ORTHO05D008906 4.9e-29 132.5 234 35.5
SHI15728 Sapria himalayana HOM05D006853 ORTHO05D008906 5.4e-28 129.0 214 36.0
Dinv16569 Davidia involucrata HOM05D000044 ORTHO05D006634 7.8e-27 125.2 180 39.4
VMungo1215G2951 Vigna mungo HOM05D006853 ORTHO05D008906 2.3e-26 123.6 237 34.2
Actinidia30174 Actinidia chinensis HOM05D006853 ORTHO05D008906 2.9e-26 123.2 180 39.4
Phvul.002G082000 Phaseolus vulgaris HOM05D006853 ORTHO05D008906 5.0e-26 122.5 271 33.6
Lalb_Chr17g0341651 Lupinus albus HOM05D006853 ORTHO05D008906 1.6e-24 117.5 246 34.6
Glyma.01G070150 Glycine max HOM05D006853 ORTHO05D008906 3.6e-24 116.3 271 32.5
Glyma.02G127200 Glycine max HOM05D006853 ORTHO05D008906 1.0e-23 114.8 227 34.4
Medtr5g049260 Medicago truncatula HOM05D006853 ORTHO05D008906 1.2e-22 111.3 238 32.8
Medtr5g049270 Medicago truncatula HOM05D006853 ORTHO05D008906 1.2e-22 111.3 238 32.8
C09p31840 Brassica napus HOM05D006853 ORTHO05D008906 2.6e-22 110.2 159 35.8
Zm00001eb119820 Zea mays HOM05D006853 ORTHO05D008906 3.4e-22 109.8 236 31.4
Ca_05156_v3 Cicer arietinum L. HOM05D006853 ORTHO05D008906 5.7e-22 109.0 237 32.9
Os01g0219000 Oryza sativa ssp. japonica HOM05D006853 ORTHO05D008906 5.7e-22 109.0 236 32.2
Lj2g0007836 Lotus japonicus HOM05D000044 ORTHO05D006634 2.9e-21 106.7 233 33.0
BcaC04g21430 Brassica carinata HOM05D006853 ORTHO05D008906 4.9e-21 105.9 159 34.0
arahy.Tifrunner.gnm1.ann1.N8UYM2 Arachis hypogaea HOM05D006853 ORTHO05D008906 6.4e-21 105.5 234 31.6
arahy.Tifrunner.gnm1.ann1.QR8D6Y Arachis hypogaea HOM05D006853 ORTHO05D008906 1.6e-19 100.9 236 31.4
Hma1.2p1_0125F.1_g058490 Hydrangea macrophylla HOM05D006853 ORTHO05D008906 1.6e-19 100.9 148 38.5
CDE03G0412 Ceratophyllum demersum HOM05D001926 ORTHO05D002121 4.3e-17 92.8 151 37.1
Cre01.g037650 Chlamydomonas reinhardtii HOM05D006853 ORTHO05D008906 2.1e-16 90.5 264 27.7
GSVIVG01010168001 Vitis vinifera HOM05D000044 ORTHO05D006634 2.8e-16 90.1 273 26.4
Psat1g127240 Pisum sativum HOM05D002500 ORTHO05D002587 3.0e-10 70.1 84 45.2
Psat2g098640 Pisum sativum HOM05D006853 ORTHO05D008906 3.0e-10 70.1 84 45.2
MCO12G436 Micromonas commoda HOM05D006853 ORTHO05D008906 1.4e-07 61.2 190 24.7
ATR0737G064 Amborella trichopoda HOM05D006853 ORTHO05D008906 2.6e-06 57.0 111 27.9
AL5G13960 Arabidopsis lyrata HOM05D006853 ORTHO05D008906 3.4e-06 56.6 92 31.5
CBR_g31493 Chara braunii HOM05D030646 ORTHO05D028724 5.8e-06 55.8 166 25.9


User provided reference genes

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