Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c1_3930 Physcomitrium patens HOM05D005476 ORTHO05D006886 2.7e-236 821.6 411 100.0
Pp3c7_18020 Physcomitrium patens HOM05D005476 ORTHO05D006886 3.9e-147 525.4 322 78.6
Mapoly0060s0007 Marchantia polymorpha HOM05D005476 ORTHO05D006886 4.7e-100 369.0 276 65.2
AagrBONN_evm.TU.Sc2ySwM_362.363 Anthoceros agrestis HOM05D005476 ORTHO05D006886 2.3e-83 313.5 279 56.6
SEGI_26423 Sequoiadendron giganteum HOM05D005476 ORTHO05D006886 2.4e-80 303.5 291 54.0
SMO329G0019 Selaginella moellendorffii HOM05D005476 ORTHO05D006886 8.6e-78 295.0 265 54.3
CBR_g23861 Chara braunii HOM05D005476 ORTHO05D006886 2.4e-72 276.9 278 49.6
THA.LOC104810712 Tarenaya hassleriana HOM05D005476 ORTHO05D006886 6.0e-71 272.3 290 48.3
TWI31G0160 Tripterygium wilfordii HOM05D005476 ORTHO05D006886 7.8e-71 271.9 299 44.8
TWI79G0899 Tripterygium wilfordii HOM05D005476 ORTHO05D006886 1.3e-70 271.2 299 46.5
Nn2g13708 Nelumbo nucifera HOM05D005476 ORTHO05D006886 1.7e-70 270.8 279 48.4
TAR636G1181 Trochodendron aralioides HOM05D005476 ORTHO05D006886 2.3e-70 270.4 291 46.0
TAR633G0563 Trochodendron aralioides HOM05D005476 ORTHO05D006886 3.9e-70 269.6 288 45.5
Thhalv10014005m.g Eutrema salsugineum HOM05D005476 ORTHO05D006886 1.9e-69 267.3 287 47.0
AT5G58730 Arabidopsis thaliana HOM05D005476 ORTHO05D006886 1.6e-68 264.2 290 46.2
C09p50810 Brassica napus HOM05D005476 ORTHO05D006886 1.6e-68 264.2 273 47.6
Carub.0008s1935 Capsella rubella HOM05D005476 ORTHO05D006886 2.1e-68 263.8 276 47.1
Nn2g11493 Nelumbo nucifera HOM05D005476 ORTHO05D006886 2.8e-68 263.5 268 48.9
Sp6g20420 Schrenkiella parvula HOM05D005476 ORTHO05D006886 4.8e-68 262.7 290 46.2
Dinv14437 Davidia involucrata HOM05D005476 ORTHO05D006886 6.2e-68 262.3 300 45.3
BolC9t57941H Brassica oleracea HOM05D005476 ORTHO05D006886 1.1e-67 261.5 273 47.3
AL8G35010 Arabidopsis lyrata HOM05D005476 ORTHO05D006886 1.4e-67 261.2 279 47.0
PSO801G0319 Papaver somniferum HOM05D005476 ORTHO05D006886 1.8e-67 260.8 294 45.2
FAN21G0574 Fragaria x ananassa HOM05D005476 ORTHO05D006886 3.1e-67 260.0 279 47.0
PSO339G1712 Papaver somniferum HOM05D005476 ORTHO05D006886 3.1e-67 260.0 294 44.6
BraA10t43679Z Brassica rapa HOM05D005476 ORTHO05D006886 4.0e-67 259.6 276 47.5
RcHm_v2.0_Chr5g0069451 Rosa chinensis HOM05D005476 ORTHO05D006886 4.0e-67 259.6 300 45.0
A10p15540 Brassica napus HOM05D005476 ORTHO05D006886 5.3e-67 259.2 276 47.1
Potri.009G046200 Populus trichocarpa HOM05D005476 ORTHO05D006886 1.2e-66 258.1 304 44.1
Solyc06g076950.3 Solanum lycopersicum HOM05D005476 ORTHO05D006886 1.2e-66 258.1 276 45.3
CSS0011477 Camellia sinensis var. sinensis HOM05D005476 ORTHO05D006886 2.0e-66 257.3 314 43.9
Cpa.g.sc415.4 Carica papaya HOM05D005476 ORTHO05D006886 2.6e-66 256.9 279 45.5
DCAR_007375 Daucus carota HOM05D005476 ORTHO05D006886 2.6e-66 256.9 307 44.6
Potri.001G251500 Populus trichocarpa HOM05D005476 ORTHO05D006886 2.6e-66 256.9 305 43.3
SalBow2G2575 Salvia bowleyana HOM05D005476 ORTHO05D006886 2.6e-66 256.9 304 42.8
Sopen06g033350 Solanum pennellii HOM05D005476 ORTHO05D006886 2.6e-66 256.9 276 45.3
SGA_v2.0_scaffold146G36140 Striga asiatica HOM05D005476 ORTHO05D006886 3.4e-66 256.5 304 43.4
CARHR272640 Cardamine hirsuta HOM05D005476 ORTHO05D006886 4.4e-66 256.1 290 45.2
FvH4_3g38550 Fragaria vesca HOM05D005476 ORTHO05D006886 4.4e-66 256.1 300 44.7
Gorai.006G106700 Gossypium raimondii HOM05D005476 ORTHO05D006886 5.8e-66 255.8 301 43.5
PGSC0003DMG400030356 Solanum tuberosum HOM05D005476 ORTHO05D006886 5.8e-66 255.8 276 45.3
CSS0028478 Camellia sinensis var. sinensis HOM05D005476 ORTHO05D006886 7.6e-66 255.4 293 45.1
Aa31LG11G490 Aethionema arabicum HOM05D005476 ORTHO05D006886 1.3e-65 254.6 289 45.3
Aqoxy2G00901 Aquilegia oxysepala HOM05D005476 ORTHO05D006886 1.3e-65 254.6 281 47.3
Migut.N00789 Erythranthe guttata HOM05D005476 ORTHO05D006886 1.7e-65 254.2 280 46.8
FAN11G1091 Fragaria x ananassa HOM05D005476 ORTHO05D006886 2.2e-65 253.8 300 44.3
CAN.G394.127 Capsicum annuum HOM05D005476 ORTHO05D006886 2.9e-65 253.4 277 45.8
FAN16G3667 Fragaria x ananassa HOM05D005476 ORTHO05D006886 2.9e-65 253.4 279 46.2
BcaC04g19834 Brassica carinata HOM05D005476 ORTHO05D006886 4.9e-65 252.7 273 46.9
Haze_24322 Corylus avellana HOM05D005476 ORTHO05D006886 4.9e-65 252.7 300 44.3
Cfa011695 Carpinus fangiana HOM05D005476 ORTHO05D006886 8.4e-65 251.9 300 44.0
Duzib168G1303 Durio zibethinus HOM05D005476 ORTHO05D006886 8.4e-65 251.9 281 45.2
Sabra09G0033300 Salix brachista HOM05D005476 ORTHO05D006886 1.1e-64 251.5 303 43.2
SGA_v2.0_scaffold120G32912 Striga asiatica HOM05D005476 ORTHO05D006886 1.1e-64 251.5 304 42.4
MBI14_g42907_MAGBIO Magnolia biondii HOM05D005476 ORTHO05D006886 1.4e-64 251.1 285 44.9
Nitab4.5_0001806g0030 Nicotiana tabacum HOM05D005476 ORTHO05D006886 1.4e-64 251.1 276 46.0
Gohir.A09G090300 Gossypium hirsutum HOM05D005476 ORTHO05D006886 1.9e-64 250.8 276 45.3
CANSAT25G3760 Cannabis sativa HOM05D005476 ORTHO05D006886 2.4e-64 250.4 287 46.7
SalBow5G1841 Salvia bowleyana HOM05D005476 ORTHO05D006886 2.4e-64 250.4 286 44.1
Glyma.14G193500 Glycine max HOM05D005476 ORTHO05D006886 3.2e-64 250.0 294 44.2
Nitab4.5_0000010g0290 Nicotiana tabacum HOM05D005476 ORTHO05D006886 4.2e-64 249.6 276 45.3
Atru.chr3.4220 Acer truncatum HOM05D005476 ORTHO05D006886 5.4e-64 249.2 299 44.1
Ciclev10028681m.g Citrus clementina HOM05D005476 ORTHO05D006886 5.4e-64 249.2 309 42.1
Lalb_Chr17g0345081 Lupinus albus HOM05D005476 ORTHO05D006886 5.4e-64 249.2 299 44.8
Manes.02G119400 Manihot esculenta HOM05D005476 ORTHO05D006886 5.4e-64 249.2 297 42.8
CDE04G1962 Ceratophyllum demersum HOM05D005476 ORTHO05D006886 9.3e-64 248.4 283 45.9
Dinv28640 Davidia involucrata HOM05D005476 ORTHO05D006886 9.3e-64 248.4 300 43.3
Os03g0737701 Oryza sativa ssp. japonica HOM05D005476 ORTHO05D006886 9.3e-64 248.4 335 43.6
Peaxi162Scf00540g00426 Petunia axillaris HOM05D005476 ORTHO05D006886 9.3e-64 248.4 275 46.9
Thecc.09G301800 Theobroma cacao HOM05D005476 ORTHO05D006886 1.2e-63 248.1 281 44.5
arahy.Tifrunner.gnm1.ann1.Q06W8H Arachis hypogaea HOM05D005476 ORTHO05D006886 1.6e-63 247.7 310 43.9
unitig_8.g3687 Utricularia gibba HOM05D005476 ORTHO05D006886 1.6e-63 247.7 297 44.1
HPP92_002247 Vanilla planifolia HOM05D005476 ORTHO05D006886 2.1e-63 247.3 280 45.0
Gohir.D09G090400 Gossypium hirsutum HOM05D005476 ORTHO05D006886 2.7e-63 246.9 276 44.9
TPR.G5779 Trifolium pratense HOM05D005476 ORTHO05D006886 2.7e-63 246.9 294 43.2
COL.COLO4_19157 Corchorus olitorius HOM05D005476 ORTHO05D006886 3.5e-63 246.5 301 43.2
MD11G1074700 Malus domestica HOM05D005476 ORTHO05D006886 3.5e-63 246.5 314 42.4
Sed0016907 Sechium edule HOM05D005476 ORTHO05D006886 3.5e-63 246.5 280 45.4
FAN25G3001 Fragaria x ananassa HOM05D005476 ORTHO05D006886 6.0e-63 245.7 279 45.2
Eucgr.B02253 Eucalyptus grandis HOM05D005476 ORTHO05D006886 7.9e-63 245.4 280 45.4
Prupe.6G057500 Prunus persica HOM05D005476 ORTHO05D006886 1.3e-62 244.6 300 43.3
Zm00001eb056490 Zea mays HOM05D005476 ORTHO05D006886 1.3e-62 244.6 290 46.2
unitig_22.g5210 Utricularia gibba HOM05D005476 ORTHO05D006886 1.7e-62 244.2 281 45.9
ATR0618G050 Amborella trichopoda HOM05D005476 ORTHO05D006886 3.0e-62 243.4 301 42.5
CiPaw.14G059600 Carya illinoinensis HOM05D005476 ORTHO05D006886 6.6e-62 242.3 303 43.2
Duzib170G1024 Durio zibethinus HOM05D005476 ORTHO05D006886 6.6e-62 242.3 283 44.5
Lsat_1_v5_gn_9_20101 Lactuca sativa HOM05D005476 ORTHO05D006886 6.6e-62 242.3 296 44.6
Hund18848 Selenicereus undatus HOM05D005476 ORTHO05D006886 6.6e-62 242.3 304 43.1
vmacro02961 Vaccinium macrocarpon HOM05D005476 ORTHO05D006886 8.7e-62 241.9 269 45.4
Glyma.02G226600 Glycine max HOM05D005476 ORTHO05D006886 1.1e-61 241.5 293 43.7
HanXRQChr04g0109161 Helianthus annuus HOM05D005476 ORTHO05D006886 1.1e-61 241.5 281 43.1
CiPaw.13G077600 Carya illinoinensis HOM05D005476 ORTHO05D006886 1.5e-61 241.1 300 43.0
MD03G1070700 Malus domestica HOM05D005476 ORTHO05D006886 2.5e-61 240.4 300 42.3
Medtr5g070350 Medicago truncatula HOM05D005476 ORTHO05D006886 3.3e-61 240.0 294 43.5
Ah.08g221180 Amaranthus hybridus HOM05D005476 ORTHO05D006886 5.6e-61 239.2 302 43.4
PGR102G2402 Punica granatum HOM05D005476 ORTHO05D006886 5.6e-61 239.2 269 46.1
Ca_05598_v3 Cicer arietinum L. HOM05D005476 ORTHO05D006886 7.4e-61 238.8 299 42.1
Cc01_g14180 Coffea canephora HOM05D005476 ORTHO05D006886 7.4e-61 238.8 277 44.8
MELO3C020550.2 Cucumis melo HOM05D005476 ORTHO05D006886 1.3e-60 238.0 297 43.8
ClCG03G000760 Citrullus lanatus HOM05D005476 ORTHO05D006886 2.1e-60 237.3 280 43.9
Manes.01G161600 Manihot esculenta HOM05D005476 ORTHO05D006886 2.1e-60 237.3 297 41.1
QL01p038276 Quercus lobata HOM05D005476 ORTHO05D006886 2.1e-60 237.3 280 44.3
LjContig00155g0002690 Lotus japonicus HOM05D005476 ORTHO05D006886 3.6e-60 236.5 297 42.4
Psat2g058600 Pisum sativum HOM05D005476 ORTHO05D006886 4.8e-60 236.1 293 42.7
AUR62020130 Chenopodium quinoa HOM05D005476 ORTHO05D006886 8.1e-60 235.3 297 41.4
Rhsim13G0069500 Rhododendron simsii HOM05D005476 ORTHO05D006886 8.1e-60 235.3 275 45.1
EL10Ac7g16167 Beta vulgaris HOM05D005476 ORTHO05D006886 1.1e-59 235.0 296 41.6
AUR62001646 Chenopodium quinoa HOM05D005476 ORTHO05D006886 1.1e-59 235.0 297 41.1
Sc06g0008450 Simmondsia chinensis HOM05D005476 ORTHO05D006886 1.8e-59 234.2 281 45.6
SHI19142 Sapria himalayana HOM05D005476 ORTHO05D006886 6.9e-59 232.3 280 44.6
Phvul.008G261400 Phaseolus vulgaris HOM05D005476 ORTHO05D006886 3.4e-58 229.9 293 42.0
SalBow8G4850 Salvia bowleyana HOM05D005476 ORTHO05D006886 2.2e-57 227.3 304 40.1
GSVIVG01024740001 Vitis vinifera HOM05D005476 ORTHO05D006886 2.2e-57 227.3 299 41.1
ECA247G2000 Erigeron canadensis HOM05D005476 ORTHO05D006886 1.4e-56 224.6 284 43.0
Sed0014418 Sechium edule HOM05D005476 ORTHO05D006886 1.4e-56 224.6 280 41.1
CsaV3_1G036180 Cucumis sativus L. HOM05D005476 ORTHO05D006886 3.2e-56 223.4 269 42.8
VMungo0647G0678 Vigna mungo HOM05D005476 ORTHO05D006886 3.2e-56 223.4 261 44.4
Oeu013433.3 Olea europaea HOM05D005476 ORTHO05D006886 3.9e-54 216.5 287 43.2
CDE02G0680 Ceratophyllum demersum HOM05D005476 ORTHO05D006886 2.8e-52 210.3 307 39.1
Oeu000377.2 Olea europaea HOM05D005476 ORTHO05D006886 1.1e-43 181.8 261 42.1
Lj1A137G45 Lonicera japonica HOM05D005476 ORTHO05D006886 1.5e-42 177.9 274 37.6
AL1010U10010 Arabidopsis lyrata HOM05D005476 ORTHO05D006886 5.0e-41 172.9 188 46.3
arahy.Tifrunner.gnm1.ann1.70CJD0 Arachis hypogaea HOM05D005476 ORTHO05D006886 3.7e-36 156.8 172 45.9
Pp3c11_9540 Physcomitrium patens HOM05D005476 ORTHO05D006886 8.2e-36 155.6 108 69.4
Gohir.D05G089750 Gossypium hirsutum HOM05D005476 ORTHO05D006886 4.6e-31 139.8 163 46.0
A03p12050 Brassica napus HOM05D005476 ORTHO05D006886 1.0e-22 112.1 134 43.3
HanXRQChr16g0507541 Helianthus annuus HOM05D005476 ORTHO05D006886 1.6e-18 98.2 80 53.8
RcHm_v2.0_Chr6g0276161 Rosa chinensis HOM05D005476 ORTHO05D006886 5.5e-16 89.7 127 37.8
RcHm_v2.0_Chr7g0201761 Rosa chinensis HOM05D005476 ORTHO05D006886 1.4e-11 75.1 127 34.6
BraA03t10517Z Brassica rapa HOM05D005476 ORTHO05D006886 5.9e-10 69.7 66 50.0
Actinidia23243 Actinidia chinensis HOM05D005476 ORTHO05D006886 1.7e-09 68.2 63 52.4
arahy.Tifrunner.gnm1.ann1.Y3WSKM Arachis hypogaea HOM05D005476 ORTHO05D006886 1.9e-08 64.7 103 35.9
C03p15890 Brassica napus HOM05D000062 ORTHO05D021669 7.2e-08 62.8 58 55.2
BolC3t14020H Brassica oleracea HOM05D000062 ORTHO05D006886 7.2e-08 62.8 58 55.2
SalBow8G2493 Salvia bowleyana HOM05D005476 ORTHO05D006886 1.2e-07 62.0 166 28.9
RcHm_v2.0_Chr7g0242751 Rosa chinensis HOM05D005476 ORTHO05D006886 8.0e-07 59.3 86 34.9


User provided reference genes

Program Settings