Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c1_38690 Physcomitrium patens HOM05D004175 ORTHO05D004664 3.6e-144 515.4 359 100.0
Pp3c2_9120 Physcomitrium patens HOM05D004175 ORTHO05D004664 1.7e-85 320.5 329 72.9
VMungo0251G2778 Vigna mungo HOM05D004175 ORTHO05D004664 3.4e-62 243.0 308 53.9
Hund09241 Selenicereus undatus HOM05D004175 ORTHO05D004664 9.3e-60 235.0 311 54.0
Medtr8g102770 Medicago truncatula HOM05D004175 ORTHO05D004664 1.0e-58 231.5 344 51.2
Lalb_Chr05g0223141 Lupinus albus HOM05D004175 ORTHO05D004664 1.7e-58 230.7 306 59.2
Haze_25808 Corylus avellana HOM05D004175 ORTHO05D004664 2.8e-56 223.4 306 56.9
PSO210G6864 Papaver somniferum HOM05D004175 ORTHO05D004664 3.6e-56 223.0 308 55.5
Lj3g0019618 Lotus japonicus HOM05D004175 ORTHO05D004664 4.8e-56 222.6 308 53.6
arahy.Tifrunner.gnm1.ann1.2Q2DTK Arachis hypogaea HOM05D004175 ORTHO05D004664 1.4e-55 221.1 346 53.8
CAN.G274.4 Capsicum annuum HOM05D004175 ORTHO05D004664 1.4e-55 221.1 308 53.6
MD02G1060900 Malus domestica HOM05D004175 ORTHO05D004664 5.3e-55 219.2 308 54.2
CSS0007429 Camellia sinensis var. sinensis HOM05D004175 ORTHO05D004664 1.2e-54 218.0 308 57.8
CSS0045871 Camellia sinensis var. sinensis HOM05D004175 ORTHO05D004664 1.2e-54 218.0 308 57.8
Glyma.08G034700 Glycine max HOM05D004175 ORTHO05D004664 2.6e-54 216.9 308 55.2
CANSAT56G2035 Cannabis sativa HOM05D004175 ORTHO05D004664 4.5e-54 216.1 308 56.8
TAR383G0226 Trochodendron aralioides HOM05D004175 ORTHO05D004664 4.5e-54 216.1 308 56.2
Eucgr.C03782 Eucalyptus grandis HOM05D004175 ORTHO05D004664 9.9e-54 214.9 333 54.4
Ciclev10008855m.g Citrus clementina HOM05D004175 ORTHO05D004664 3.8e-53 213.0 334 50.0
arahy.Tifrunner.gnm1.ann1.5M1SBB Arachis hypogaea HOM05D004175 ORTHO05D004664 6.4e-53 212.2 346 52.9
Prupe.7G222100 Prunus persica HOM05D004175 ORTHO05D004664 1.1e-52 211.5 308 50.0
QL02p042164 Quercus lobata HOM05D004175 ORTHO05D004664 1.4e-52 211.1 306 53.9
Solyc05g018150.3 Solanum lycopersicum HOM05D004175 ORTHO05D004664 2.4e-52 210.3 308 54.5
Aqoxy7G03896 Aquilegia oxysepala HOM05D004175 ORTHO05D004664 4.2e-52 209.5 308 51.0
Sopen05g014800 Solanum pennellii HOM05D004175 ORTHO05D004664 5.4e-52 209.1 308 54.5
ClCG11G002240 Citrullus lanatus HOM05D004175 ORTHO05D004664 9.3e-52 208.4 380 41.1
Glyma.05G227700 Glycine max HOM05D004175 ORTHO05D004664 9.3e-52 208.4 308 55.8
Dinv36699 Davidia involucrata HOM05D004175 ORTHO05D004664 1.2e-51 208.0 308 54.9
Phvul.002G310000 Phaseolus vulgaris HOM05D004175 ORTHO05D004664 1.2e-51 208.0 308 49.7
Ca_17354_v3 Cicer arietinum L. HOM05D004175 ORTHO05D004664 2.7e-51 206.8 310 52.3
Ca_29618_v3 Cicer arietinum L. HOM05D004175 ORTHO05D004664 2.7e-51 206.8 310 52.3
Sc08g0007900 Simmondsia chinensis HOM05D004175 ORTHO05D004664 3.5e-51 206.5 309 58.9
AagrBONN_evm.TU.Sc2ySwM_117.1201 Anthoceros agrestis HOM05D004175 ORTHO05D004664 6.0e-51 205.7 314 54.8
Atru.chr7.1440 Acer truncatum HOM05D004175 ORTHO05D004664 7.9e-51 205.3 332 50.0
Lsat_1_v5_gn_5_143861 Lactuca sativa HOM05D004175 ORTHO05D004664 7.9e-51 205.3 308 52.9
SGA_v2.0_scaffold10G05161 Striga asiatica HOM05D004175 ORTHO05D004664 7.9e-51 205.3 309 53.1
SGA_v2.0_scaffold62G21556 Striga asiatica HOM05D004175 ORTHO05D004664 1.0e-50 204.9 311 53.4
Peaxi162Scf00001g00131 Petunia axillaris HOM05D004175 ORTHO05D004664 1.3e-50 204.5 308 53.2
FAN19G1571 Fragaria x ananassa HOM05D004175 ORTHO05D004664 5.1e-50 202.6 308 56.8
PSO210G7624 Papaver somniferum HOM05D004175 ORTHO05D004664 1.1e-49 201.4 308 53.6
BNapus_Darmor_BZH_scaffold_38p02220 Brassica napus HOM05D004175 ORTHO05D004664 2.5e-49 200.3 308 50.3
Oeu000358.1 Olea europaea HOM05D004175 ORTHO05D004664 2.5e-49 200.3 308 54.5
MD15G1194400 Malus domestica HOM05D004175 ORTHO05D004664 3.3e-49 199.9 308 53.9
AT5G19680 Arabidopsis thaliana HOM05D004175 ORTHO05D004664 5.6e-49 199.1 314 49.0
Thhalv10014089m.g Eutrema salsugineum HOM05D004175 ORTHO05D004664 5.6e-49 199.1 310 49.4
DCAR_012049 Daucus carota HOM05D004175 ORTHO05D004664 7.4e-49 198.7 308 49.4
BolC9t58515H Brassica oleracea HOM05D004175 ORTHO05D004664 9.6e-49 198.4 310 49.7
Carub.0006s1803 Capsella rubella HOM05D004175 ORTHO05D004664 9.6e-49 198.4 308 49.7
BcaB05g23410 Brassica carinata HOM05D004175 ORTHO05D004664 1.3e-48 198.0 308 50.0
BraA10t44078Z Brassica rapa HOM05D004175 ORTHO05D004664 1.6e-48 197.6 310 49.4
A10p20040 Brassica napus HOM05D004175 ORTHO05D004664 3.7e-48 196.4 310 49.4
Cc06_g10300 Coffea canephora HOM05D004175 ORTHO05D004664 3.7e-48 196.4 308 49.4
ATR0705G211 Amborella trichopoda HOM05D004175 ORTHO05D004664 1.1e-47 194.9 340 51.5
CiPaw.03G226400 Carya illinoinensis HOM05D004175 ORTHO05D004664 1.4e-47 194.5 308 52.3
Gohir.D06G065000 Gossypium hirsutum HOM05D004175 ORTHO05D004664 2.4e-47 193.7 308 53.2
Cfa003199 Carpinus fangiana HOM05D004175 ORTHO05D004664 3.1e-47 193.4 306 52.6
Rhsim05G0041300 Rhododendron simsii HOM05D004175 ORTHO05D004664 3.1e-47 193.4 308 50.6
SHI11434 Sapria himalayana HOM05D004175 ORTHO05D004664 3.1e-47 193.4 351 45.6
AL6G31190 Arabidopsis lyrata HOM05D004175 ORTHO05D004664 4.0e-47 193.0 314 48.1
Mapoly0051s0012 Marchantia polymorpha HOM05D004175 ORTHO05D004664 5.3e-47 192.6 312 55.4
Thecc.09G102700 Theobroma cacao HOM05D004175 ORTHO05D004664 5.3e-47 192.6 309 53.4
CARHR193230 Cardamine hirsuta HOM05D004175 ORTHO05D004664 1.2e-46 191.4 308 48.7
Gohir.A13G195800 Gossypium hirsutum HOM05D004175 ORTHO05D004664 2.0e-46 190.7 307 51.5
Gohir.D13G201000 Gossypium hirsutum HOM05D004175 ORTHO05D004664 2.0e-46 190.7 307 51.8
HanXRQChr10g0318361 Helianthus annuus HOM05D004175 ORTHO05D004664 3.4e-46 189.9 308 52.6
Zm00001eb204970 Zea mays HOM05D004175 ORTHO05D004664 3.4e-46 189.9 308 52.9
BcaC04g19365 Brassica carinata HOM05D004175 ORTHO05D004664 4.5e-46 189.5 310 48.4
C09p56500 Brassica napus HOM05D004175 ORTHO05D004664 4.5e-46 189.5 310 48.4
Actinidia09442 Actinidia chinensis HOM05D001936 ORTHO05D002296 7.6e-46 188.7 306 53.3
AUR62010918 Chenopodium quinoa HOM05D004175 ORTHO05D004664 2.9e-45 186.8 314 48.1
Gohir.A06G066500 Gossypium hirsutum HOM05D004175 ORTHO05D004664 2.9e-45 186.8 307 52.1
CAN.G525.1 Capsicum annuum HOM05D004175 ORTHO05D004664 3.2e-44 183.3 308 50.3
THA.LOC104811087 Tarenaya hassleriana HOM05D004175 ORTHO05D004664 3.2e-44 183.3 308 51.6
Sed0003540 Sechium edule HOM05D004175 ORTHO05D004664 5.5e-44 182.6 307 52.8
Manes.16G110500 Manihot esculenta HOM05D004175 ORTHO05D004664 1.2e-43 181.4 308 51.6
BcaC01g02078 Brassica carinata HOM05D004175 ORTHO05D004664 1.6e-43 181.0 189 49.2
FvH4_1g05880 Fragaria vesca HOM05D004175 ORTHO05D004664 1.6e-43 181.0 308 51.0
Oeu017825.1 Olea europaea HOM05D004175 ORTHO05D004664 1.6e-43 181.0 319 50.2
MSTRG.6019 Avicennia marina HOM05D004175 ORTHO05D004664 2.1e-43 180.6 311 52.1
BcaC04g19364 Brassica carinata HOM05D004175 ORTHO05D004664 2.7e-43 180.3 188 50.5
Duzib187G1630 Durio zibethinus HOM05D004175 ORTHO05D004664 2.7e-43 180.3 307 51.1
vmacro10860 Vaccinium macrocarpon HOM05D004175 ORTHO05D004664 3.5e-43 179.9 308 51.0
CsaV3_2G001990 Cucumis sativus L. HOM05D004175 ORTHO05D004664 4.6e-43 179.5 307 51.1
Migut.J01107 Erythranthe guttata HOM05D004175 ORTHO05D004664 4.6e-43 179.5 311 52.1
FAN23G2598 Fragaria x ananassa HOM05D004175 ORTHO05D004664 4.6e-43 179.5 308 50.0
FAN28G2614 Fragaria x ananassa HOM05D004175 ORTHO05D004664 1.0e-42 178.3 308 49.0
FAN26G0873 Fragaria x ananassa HOM05D004175 ORTHO05D004664 1.8e-42 177.6 308 49.4
FAN26G2762 Fragaria x ananassa HOM05D004175 ORTHO05D004664 1.8e-42 177.6 308 49.4
Os02g0230100 Oryza sativa ssp. japonica HOM05D004175 ORTHO05D004664 1.8e-42 177.6 333 51.1
TWI32G1108 Tripterygium wilfordii HOM05D004175 ORTHO05D004664 2.3e-42 177.2 332 46.7
ECA247G2452 Erigeron canadensis HOM05D004175 ORTHO05D004664 5.1e-42 176.0 186 51.6
Duzib168G0201 Durio zibethinus HOM05D004175 ORTHO05D004664 6.7e-42 175.6 204 52.5
BcaC04g19363 Brassica carinata HOM05D004175 ORTHO05D004664 8.7e-42 175.3 189 49.7
MELO3C004581.2 Cucumis melo HOM05D004175 ORTHO05D004664 1.9e-41 174.1 354 47.7
Sp6g24700 Schrenkiella parvula HOM05D004175 ORTHO05D004664 2.5e-41 173.7 308 49.0
Gorai.010G076100 Gossypium raimondii HOM05D004175 ORTHO05D004664 3.3e-41 173.3 308 50.6
Psat7g016360 Pisum sativum HOM05D004175 ORTHO05D004664 5.7e-41 172.6 305 50.2
ECA234G4006 Erigeron canadensis HOM05D004175 ORTHO05D004664 7.4e-41 172.2 308 51.0
Gorai.013G229800 Gossypium raimondii HOM05D004175 ORTHO05D004664 9.6e-41 171.8 184 57.1
Ah.14g083210 Amaranthus hybridus HOM05D004175 ORTHO05D004664 1.3e-40 171.4 307 50.5
BcaC03g13699 Brassica carinata HOM05D004175 ORTHO05D004664 1.3e-40 171.4 308 48.7
Nn2g11614 Nelumbo nucifera HOM05D004175 ORTHO05D004664 1.6e-40 171.0 307 49.8
Aa31LG1G8760 Aethionema arabicum HOM05D004175 ORTHO05D004664 2.8e-40 170.2 338 47.0
BraA02t05525Z Brassica rapa HOM05D004175 ORTHO05D004664 2.8e-40 170.2 308 48.7
A02p05730 Brassica napus HOM05D004175 ORTHO05D004664 3.7e-40 169.9 308 49.0
GSVIVG01015319001 Vitis vinifera HOM05D004175 ORTHO05D004664 4.8e-40 169.5 307 50.5
RcHm_v2.0_Chr2g0091541 Rosa chinensis HOM05D004175 ORTHO05D004664 6.2e-40 169.1 185 58.9
Hund26252 Selenicereus undatus HOM05D004175 ORTHO05D004664 8.2e-40 168.7 307 50.5
CDE02G1631 Ceratophyllum demersum HOM05D004175 ORTHO05D004664 2.4e-39 167.2 308 50.6
SEGI_33191 Sequoiadendron giganteum HOM05D004175 ORTHO05D004664 3.1e-39 166.8 341 47.2
Potri.018G086200 Populus trichocarpa HOM05D004175 ORTHO05D004664 9.0e-39 165.2 185 57.3
Lalb_Chr09g0331471 Lupinus albus HOM05D004175 ORTHO05D004664 1.5e-38 164.5 288 52.1
BolC2t08664H Brassica oleracea HOM05D004175 ORTHO05D004664 2.6e-38 163.7 194 49.5
Sabra18G0074500 Salix brachista HOM05D004175 ORTHO05D004664 2.6e-38 163.7 184 57.6
COL.COLO4_34774 Corchorus olitorius HOM05D004175 ORTHO05D004664 7.6e-38 162.2 140 60.0
SMO337G0008 Selaginella moellendorffii HOM05D004175 ORTHO05D004664 1.0e-37 161.8 313 51.4
TPR.G23501 Trifolium pratense HOM05D004175 ORTHO05D004664 1.3e-37 161.4 306 49.7
MBI04_g40471_MAGBIO Magnolia biondii HOM05D004175 ORTHO05D004664 1.4e-36 157.9 202 54.0
C05p31230 Brassica napus HOM05D004175 ORTHO05D004664 3.2e-36 156.8 174 46.6
Cpa.g.sc40.51 Carica papaya HOM05D004175 ORTHO05D004664 3.2e-36 156.8 186 53.8
C03p72980 Brassica napus HOM05D004175 ORTHO05D004664 9.3e-36 155.2 174 46.0
Nn8g39121 Nelumbo nucifera HOM05D004175 ORTHO05D004664 1.6e-35 154.5 207 47.3
unitig_26.g8970 Utricularia gibba HOM05D004175 ORTHO05D004664 3.5e-35 153.3 322 45.0
RcHm_v2.0_Chr2g0091621 Rosa chinensis HOM05D004175 ORTHO05D004664 7.9e-35 152.1 185 53.5
Potri.006G163900 Populus trichocarpa HOM05D004175 ORTHO05D004664 1.0e-34 151.8 308 45.8
C07p36980 Brassica napus HOM05D004175 ORTHO05D004664 3.7e-32 143.3 176 48.3
C09p49510 Brassica napus HOM05D004175 ORTHO05D004664 1.4e-31 141.4 175 49.1
C02p31840 Brassica napus HOM05D004175 ORTHO05D004664 4.1e-31 139.8 176 51.7
CBR_g36965 Chara braunii HOM05D004175 ORTHO05D004664 9.0e-31 138.7 347 43.8
C04p04320 Brassica napus HOM05D004175 ORTHO05D004664 2.6e-30 137.1 156 47.4
EL10Ac8g18403 Beta vulgaris HOM05D004175 ORTHO05D004664 7.7e-30 135.6 185 45.9
C03p57560 Brassica napus HOM05D004175 ORTHO05D004664 5.0e-29 132.9 167 46.7
MBI04_g06580_MAGBIO Magnolia biondii HOM05D004175 ORTHO05D004664 8.5e-29 132.1 135 56.3
C01p01530 Brassica napus HOM05D004175 ORTHO05D004664 1.1e-28 131.7 161 44.7
BcaC01g02978 Brassica carinata HOM05D004175 ORTHO05D004664 4.2e-28 129.8 190 41.6
BolC3t18031H Brassica oleracea HOM05D004175 ORTHO05D004664 4.2e-28 129.8 153 45.8
Nitab4.5_0003199g0020 Nicotiana tabacum HOM05D004175 ORTHO05D004664 3.6e-27 126.7 114 56.1
Nitab4.5_0000012g0030 Nicotiana tabacum HOM05D004175 ORTHO05D004664 4.6e-27 126.3 116 55.2
BolC3t19136H Brassica oleracea HOM05D004175 ORTHO05D004664 1.0e-26 125.2 124 50.8
BcaC03g15042 Brassica carinata HOM05D004175 ORTHO05D004664 3.0e-26 123.6 144 47.2
BcaC06g33783 Brassica carinata HOM05D004175 ORTHO05D004664 3.1e-23 113.6 144 47.9
BolC7t44210H Brassica oleracea HOM05D004175 ORTHO05D004664 3.1e-23 113.6 113 51.3
Gorai.001G184800 Gossypium raimondii HOM05D004175 ORTHO05D004664 1.3e-21 108.2 137 42.3
MD03G1179500 Malus domestica HOM05D004175 ORTHO05D004664 2.3e-18 97.4 139 45.3
A07p01400 Brassica napus HOM05D004175 ORTHO05D004664 5.1e-18 96.3 138 44.9
BraA03t14262Z Brassica rapa HOM05D004175 ORTHO05D004664 2.0e-17 94.4 132 53.0
Cre05.g234655 Chlamydomonas reinhardtii HOM05D004175 ORTHO05D004664 5.7e-17 92.8 143 42.0
Glyma.08G276800 Glycine max HOM05D004175 ORTHO05D004664 1.1e-15 88.6 141 40.4
FAN10G3778 Fragaria x ananassa HOM05D004175 ORTHO05D004664 1.4e-15 88.2 79 58.2
FAN10G1780 Fragaria x ananassa HOM05D004175 ORTHO05D004664 5.3e-15 86.3 79 57.0
FAN10G3383 Fragaria x ananassa HOM05D004175 ORTHO05D004664 5.3e-15 86.3 79 57.0
Gorai.009G408400 Gossypium raimondii HOM05D004175 ORTHO05D004664 9.1e-15 85.5 123 50.4
Lj7A662T62 Lonicera japonica HOM05D004175 ORTHO05D004664 5.9e-14 82.8 115 53.9
FAN10G2625 Fragaria x ananassa HOM05D004175 ORTHO05D004664 2.5e-12 77.4 72 55.6
BolC4t22068H Brassica oleracea HOM05D004175 ORTHO05D004664 6.1e-11 72.8 50 68.0
FAN28G1141 Fragaria x ananassa HOM05D004175 ORTHO05D004664 8.0e-11 72.4 72 52.8
FvH4_5g23601 Fragaria vesca HOM05D004175 ORTHO05D045656 6.7e-10 69.3 67 55.2
FAN18G1628 Fragaria x ananassa HOM05D005966 ORTHO05D007584 2.0e-09 67.8 67 53.7
PRCOL_00004941 Prasinoderma coloniale HOM05D004175 ORTHO05D004664 1.1e-07 62.0 204 36.8
FAN20G2587 Fragaria x ananassa HOM05D000366 ORTHO05D000437 5.9e-06 56.2 52 55.8


User provided reference genes

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