Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c1_3820 Physcomitrium patens HOM05D002504 ORTHO05D007555 1.2e-264 916.0 477 100.0
Pp3c1_3850 Physcomitrium patens HOM05D002504 ORTHO05D007555 1.2e-264 916.0 477 100.0
AagrBONN_evm.TU.Sc2ySwM_369.370 Anthoceros agrestis HOM05D002504 ORTHO05D007555 5.4e-55 219.5 399 33.8
Mapoly0028s0021 Marchantia polymorpha HOM05D002504 ORTHO05D007555 2.8e-48 197.2 401 32.7
SMO367G0630 Selaginella moellendorffii HOM05D002504 ORTHO05D007555 4.3e-36 156.8 389 30.1
Actinidia34980 Actinidia chinensis HOM05D002504 ORTHO05D007555 3.2e-31 140.6 393 26.5
Gohir.A11G029531 Gossypium hirsutum HOM05D002504 ORTHO05D007555 3.2e-31 140.6 367 27.8
Gohir.D11G032900 Gossypium hirsutum HOM05D002504 ORTHO05D007555 1.6e-30 138.3 367 28.1
Gorai.007G035700 Gossypium raimondii HOM05D002504 ORTHO05D007555 1.6e-30 138.3 367 28.1
TAR622G0915 Trochodendron aralioides HOM05D002504 ORTHO05D007555 3.5e-30 137.1 374 29.7
Dinv19925 Davidia involucrata HOM05D002504 ORTHO05D007332 6.0e-30 136.3 367 26.7
RcHm_v2.0_Chr7g0180701 Rosa chinensis HOM05D002504 ORTHO05D007555 6.0e-30 136.3 369 29.3
CSS0041593 Camellia sinensis var. sinensis HOM05D002504 ORTHO05D007555 7.8e-30 136.0 367 28.3
Dinv09821 Davidia involucrata HOM05D002504 ORTHO05D007555 1.0e-29 135.6 367 27.0
Cc04_g15430 Coffea canephora HOM05D002504 ORTHO05D007555 1.3e-29 135.2 459 25.9
CSS0049848 Camellia sinensis var. sinensis HOM05D002504 ORTHO05D007555 1.7e-29 134.8 367 27.8
TAR374G0022 Trochodendron aralioides HOM05D002504 ORTHO05D007555 1.7e-29 134.8 396 27.5
SalBow5G4081 Salvia bowleyana HOM05D002504 ORTHO05D007555 2.3e-29 134.4 365 29.3
Cpa.g.sc17.218 Carica papaya HOM05D002504 ORTHO05D007555 3.0e-29 134.0 386 26.9
Rhsim12G0158700 Rhododendron simsii HOM05D002504 ORTHO05D007555 3.0e-29 134.0 366 28.1
PSO591G0510 Papaver somniferum HOM05D002504 ORTHO05D007555 6.6e-29 132.9 371 27.5
FAN04G1481 Fragaria x ananassa HOM05D002504 ORTHO05D007555 1.1e-28 132.1 371 28.0
FAN08G0998 Fragaria x ananassa HOM05D002504 ORTHO05D007555 1.9e-28 131.3 386 27.7
Actinidia19055 Actinidia chinensis HOM05D002504 ORTHO05D007555 2.5e-28 131.0 377 26.3
Nn3g16999 Nelumbo nucifera HOM05D002504 ORTHO05D007555 3.3e-28 130.6 391 27.9
SHI03355 Sapria himalayana HOM05D002504 ORTHO05D007555 3.3e-28 130.6 369 26.6
Duzib068G0930 Durio zibethinus HOM05D002504 ORTHO05D007555 7.3e-28 129.4 367 26.7
MD14G1195800 Malus domestica HOM05D002504 ORTHO05D007555 7.3e-28 129.4 368 29.9
FAN13G2799 Fragaria x ananassa HOM05D002504 ORTHO05D007555 9.5e-28 129.0 371 27.8
COL.COLO4_05456 Corchorus olitorius HOM05D002504 ORTHO05D007555 1.2e-27 128.6 372 26.3
Ciclev10020527m.g Citrus clementina HOM05D002504 ORTHO05D007555 1.6e-27 128.3 366 26.8
Haze_07368 Corylus avellana HOM05D002504 ORTHO05D007555 1.6e-27 128.3 397 26.4
Prupe.5G187600 Prunus persica HOM05D002504 ORTHO05D007555 1.6e-27 128.3 389 27.8
MSTRG.4344 Avicennia marina HOM05D002504 ORTHO05D007555 2.1e-27 127.9 367 29.2
Oeu022629.1 Olea europaea HOM05D002504 ORTHO05D007555 2.1e-27 127.9 403 28.3
FvH4_5g15370 Fragaria vesca HOM05D002504 ORTHO05D007555 2.8e-27 127.5 371 28.3
SEGI_18201 Sequoiadendron giganteum HOM05D002504 ORTHO05D007555 2.8e-27 127.5 312 28.5
Cfa018981 Carpinus fangiana HOM05D002504 ORTHO05D007555 3.6e-27 127.1 395 26.3
PSO832G2768 Papaver somniferum HOM05D002504 ORTHO05D007555 4.7e-27 126.7 457 26.0
Lj4g0008726 Lotus japonicus HOM05D002504 ORTHO05D007555 8.1e-27 125.9 418 23.4
Phvul.003G192200 Phaseolus vulgaris HOM05D002504 ORTHO05D007555 1.1e-26 125.6 393 23.4
FAN18G2091 Fragaria x ananassa HOM05D002504 ORTHO05D007555 2.3e-26 124.4 371 27.5
VMungo1215G2696 Vigna mungo HOM05D002504 ORTHO05D007555 4.0e-26 123.6 393 23.7
Nn5g27262 Nelumbo nucifera HOM05D002504 ORTHO05D007555 5.2e-26 123.2 306 28.1
Atru.BG.192.p Acer truncatum HOM05D002504 ORTHO05D007555 6.8e-26 122.9 354 28.0
Glyma.17G097600 Glycine max HOM05D002504 ORTHO05D007555 6.8e-26 122.9 384 25.0
TWI38G0829 Tripterygium wilfordii HOM05D002504 ORTHO05D007555 6.8e-26 122.9 367 24.5
Lalb_Chr12g0196751 Lupinus albus HOM05D002504 ORTHO05D007555 1.2e-25 122.1 398 24.6
PSO063G6525 Papaver somniferum HOM05D002504 ORTHO05D007555 1.5e-25 121.7 337 28.8
Thecc.03G080700 Theobroma cacao HOM05D002504 ORTHO05D007555 1.5e-25 121.7 367 26.4
CiPaw.11G039400 Carya illinoinensis HOM05D002504 ORTHO05D007555 2.0e-25 121.3 353 26.3
Manes.14G075600 Manihot esculenta HOM05D002504 ORTHO05D007555 2.0e-25 121.3 367 25.9
ATR1120G016 Amborella trichopoda HOM05D002504 ORTHO05D007555 2.6e-25 120.9 308 29.2
CANSAT78G1429 Cannabis sativa HOM05D002504 ORTHO05D007555 2.6e-25 120.9 439 25.5
Psat5g114360 Pisum sativum HOM05D002504 ORTHO05D007555 3.4e-25 120.6 374 23.8
Medtr3g078030 Medicago truncatula HOM05D002504 ORTHO05D007555 5.8e-25 119.8 368 24.7
TPR.G5442 Trifolium pratense HOM05D002504 ORTHO05D007555 5.8e-25 119.8 458 23.4
Potri.015G064300 Populus trichocarpa HOM05D002504 ORTHO05D007555 9.9e-25 119.0 367 25.9
QL10p015753 Quercus lobata HOM05D002504 ORTHO05D007555 1.3e-24 118.6 382 25.4
Peaxi162Scf00013g00007 Petunia axillaris HOM05D002504 ORTHO05D007555 1.7e-24 118.2 397 26.2
THA.LOC104808328 Tarenaya hassleriana HOM05D002504 ORTHO05D007555 2.2e-24 117.9 368 26.1
Sabra15G0090100 Salix brachista HOM05D002504 ORTHO05D007555 2.9e-24 117.5 367 26.4
TPR.G1695 Trifolium pratense HOM05D002504 ORTHO05D007555 2.9e-24 117.5 364 24.7
arahy.Tifrunner.gnm1.ann1.WQI89G Arachis hypogaea HOM05D002504 ORTHO05D007555 1.4e-23 115.2 425 22.8
CAN.G628.37 Capsicum annuum HOM05D002504 ORTHO05D007555 2.4e-23 114.4 404 25.0
arahy.Tifrunner.gnm1.ann1.XHUI7I Arachis hypogaea HOM05D002504 ORTHO05D007555 4.1e-23 113.6 393 23.2
ClCG01G016490 Citrullus lanatus HOM05D002504 ORTHO05D007555 4.1e-23 113.6 366 26.5
arahy.Tifrunner.gnm1.ann1.AAW7H5 Arachis hypogaea HOM05D002504 ORTHO05D007555 5.4e-23 113.2 427 23.0
QL10p005074 Quercus lobata HOM05D002504 ORTHO05D007555 5.4e-23 113.2 382 24.9
arahy.Tifrunner.gnm1.ann1.A4B6B0 Arachis hypogaea HOM05D002504 ORTHO05D007555 9.2e-23 112.5 425 22.8
Ca_16191_v3 Cicer arietinum L. HOM05D002504 ORTHO05D007555 9.2e-23 112.5 311 24.1
Glyma.05G029300 Glycine max HOM05D002504 ORTHO05D007555 9.2e-23 112.5 334 24.3
PGR083G1477 Punica granatum HOM05D002504 ORTHO05D007555 9.2e-23 112.5 368 25.5
Solyc06g071010.4 Solanum lycopersicum HOM05D002504 ORTHO05D007555 9.2e-23 112.5 394 24.1
Sopen06g027310 Solanum pennellii HOM05D002504 ORTHO05D007555 1.2e-22 112.1 394 23.9
ECA236G0190 Erigeron canadensis HOM05D002504 ORTHO05D007332 1.6e-22 111.7 296 27.7
Lsat_1_v5_gn_1_10961 Lactuca sativa HOM05D002504 ORTHO05D007555 1.6e-22 111.7 375 24.8
PGSC0003DMG400033071 Solanum tuberosum HOM05D002504 ORTHO05D007555 2.1e-22 111.3 392 24.0
CsaV3_6G042770 Cucumis sativus L. HOM05D002504 ORTHO05D007555 3.5e-22 110.5 366 27.0
Eucgr.A00822 Eucalyptus grandis HOM05D002504 ORTHO05D007555 4.6e-22 110.2 367 25.9
Nitab4.5_0000269g0140 Nicotiana tabacum HOM05D002504 ORTHO05D007555 6.0e-22 109.8 368 25.3
Ah.02g112510 Amaranthus hybridus HOM05D002504 ORTHO05D007555 1.3e-21 108.6 368 25.3
MELO3C007518.2 Cucumis melo HOM05D002504 ORTHO05D007555 1.7e-21 108.2 367 27.2
Sed0014360 Sechium edule HOM05D002504 ORTHO05D007555 5.1e-21 106.7 366 25.1
HanXRQChr06g0178031 Helianthus annuus HOM05D002504 ORTHO05D007555 6.6e-21 106.3 352 25.9
Aa31LG7G3620 Aethionema arabicum HOM05D002504 ORTHO05D007555 8.6e-21 105.9 367 24.8
EL10As5g23568 Beta vulgaris HOM05D002504 ORTHO05D007555 8.6e-21 105.9 378 26.7
TWI39G0444 Tripterygium wilfordii HOM05D002504 ORTHO05D007555 8.6e-21 105.9 366 23.5
Thhalv10007868m.g Eutrema salsugineum HOM05D002504 ORTHO05D007555 1.5e-20 105.1 367 24.5
AL1G31390 Arabidopsis lyrata HOM05D002504 ORTHO05D007555 1.9e-20 104.8 367 24.3
AT1G18850 Arabidopsis thaliana HOM05D002504 ORTHO05D007555 2.5e-20 104.4 368 24.2
Nitab4.5_0007394g0010 Nicotiana tabacum HOM05D002504 ORTHO05D007555 2.5e-20 104.4 375 24.3
CBR_g26261 Chara braunii HOM05D002504 ORTHO05D007555 3.3e-20 104.0 378 27.8
Sc10g0009970 Simmondsia chinensis HOM05D002504 ORTHO05D007555 5.6e-20 103.2 366 25.1
Aqoxy3G03288 Aquilegia oxysepala HOM05D002504 ORTHO05D007555 7.3e-20 102.8 368 24.2
Lj5P114T15 Lonicera japonica HOM05D002504 ORTHO05D007555 1.6e-19 101.7 300 25.3
CARHR019500 Cardamine hirsuta HOM05D002504 ORTHO05D007555 2.1e-19 101.3 367 22.9
A06p15070 Brassica napus HOM05D002504 ORTHO05D007555 3.6e-19 100.5 367 24.3
Lj7P436T44 Lonicera japonica HOM05D002504 ORTHO05D007555 3.6e-19 100.5 308 26.0
SGA_v2.0_scaffold56G20046 Striga asiatica HOM05D002504 ORTHO05D007555 3.6e-19 100.5 367 26.4
AagrBONN_evm.TU.Sc2ySwM_362.2581 Anthoceros agrestis HOM05D002504 ORTHO05D007555 8.1e-19 99.4 360 25.0
Carub.0001s1850 Capsella rubella HOM05D002504 ORTHO05D007555 8.1e-19 99.4 443 23.0
BraA06t24622Z Brassica rapa HOM05D002504 ORTHO05D007555 1.4e-18 98.6 367 24.0
HPP92_004873 Vanilla planifolia HOM05D002504 ORTHO05D007555 1.4e-18 98.6 365 24.9
MBI03_g18947_MAGBIO Magnolia biondii HOM05D002504 ORTHO05D007555 1.5e-17 95.1 371 24.3
GSVIVG01008049001 Vitis vinifera HOM05D002504 ORTHO05D007555 9.9e-17 92.4 284 27.1
AUR62038455 Chenopodium quinoa HOM05D002504 ORTHO05D007555 2.2e-16 91.3 367 23.2
AUR62042153 Chenopodium quinoa HOM05D002504 ORTHO05D007555 3.8e-16 90.5 368 23.6
unitig_52.g17495 Utricularia gibba HOM05D002504 ORTHO05D007555 8.4e-16 89.4 364 24.2
C05p17270 Brassica napus HOM05D002504 ORTHO05D007555 1.6e-14 85.1 388 22.2
BolC5t30427H Brassica oleracea HOM05D002504 ORTHO05D007555 1.6e-14 85.1 388 22.2
MBI11_g21312_MAGBIO Magnolia biondii HOM05D002504 ORTHO05D007555 2.1e-14 84.7 271 26.2
BcaC05g25787 Brassica carinata HOM05D002504 ORTHO05D007555 3.5e-14 84.0 388 22.2
Sp1g16830 Schrenkiella parvula HOM05D002504 ORTHO05D007555 3.5e-14 84.0 402 20.9
BcaB07g31903 Brassica carinata HOM05D002504 ORTHO05D007555 1.3e-13 82.0 376 22.1
Dinv02434 Davidia involucrata HOM05D002504 ORTHO05D007555 1.1e-12 79.0 148 31.1
Os01g0112100 Oryza sativa ssp. japonica HOM05D002504 ORTHO05D007555 1.5e-12 78.6 313 23.6
Zm00001eb126250 Zea mays HOM05D002504 ORTHO05D007555 2.5e-12 77.8 286 25.5
MBI03_g28522_MAGBIO Magnolia biondii HOM05D002504 ORTHO05D007555 7.3e-12 76.3 250 27.6


User provided reference genes

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