Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c1_37650 Physcomitrium patens HOM05D001739 ORTHO05D004575 9.0e-265 916.4 466 100.0
Pp3c2_3190 Physcomitrium patens HOM05D001739 ORTHO05D004575 7.0e-100 368.6 488 48.2
Mapoly0061s0020 Marchantia polymorpha HOM05D001739 ORTHO05D004575 3.6e-48 196.8 490 30.6
AagrBONN_evm.TU.Sc2ySwM_117.3958 Anthoceros agrestis HOM05D001739 ORTHO05D004575 3.4e-46 190.3 486 29.6
SMO361G0459 Selaginella moellendorffii HOM05D001739 ORTHO05D004575 7.9e-35 152.5 475 28.8
TAR383G0739 Trochodendron aralioides HOM05D001739 ORTHO05D004575 5.1e-34 149.8 485 25.4
Nn8g40294 Nelumbo nucifera HOM05D001739 ORTHO05D004575 1.9e-33 147.9 487 26.1
Dinv25520 Davidia involucrata HOM05D001739 ORTHO05D004575 6.2e-32 142.9 485 25.8
Peaxi162Scf00191g01112 Petunia axillaris HOM05D001739 ORTHO05D004575 8.1e-32 142.5 433 27.0
CSS0017458 Camellia sinensis var. sinensis HOM05D001739 ORTHO05D004575 1.1e-31 142.1 473 26.8
PGR142G3865 Punica granatum HOM05D001739 ORTHO05D004575 6.9e-31 139.4 486 25.9
Aqoxy7G03292 Aquilegia oxysepala HOM05D001739 ORTHO05D004575 2.0e-30 137.9 484 26.9
Sabra18G0055900 Salix brachista HOM05D001739 ORTHO05D004575 2.0e-30 137.9 485 24.7
vmacro17095 Vaccinium macrocarpon HOM05D001739 ORTHO05D004575 2.0e-30 137.9 489 24.7
vmacro23084 Vaccinium macrocarpon HOM05D001739 ORTHO05D004575 2.6e-30 137.5 489 24.5
Potri.006G137900 Populus trichocarpa HOM05D001739 ORTHO05D004575 1.3e-29 135.2 487 24.6
Solyc07g042380.4 Solanum lycopersicum HOM05D001739 ORTHO05D004575 1.7e-29 134.8 447 26.2
CiPaw.03G202600 Carya illinoinensis HOM05D001739 ORTHO05D004575 2.2e-29 134.4 486 24.7
Ciclev10023308m.g Citrus clementina HOM05D001739 ORTHO05D004575 2.2e-29 134.4 487 25.9
Hma1.2p1_0169F.1_g074380 Hydrangea macrophylla HOM05D001739 ORTHO05D004575 2.2e-29 134.4 484 24.2
Ca_09790_v3 Cicer arietinum L. HOM05D001739 ORTHO05D004575 2.9e-29 134.0 484 25.8
Atru.chr7.1752 Acer truncatum HOM05D001739 ORTHO05D004575 3.8e-29 133.7 487 24.8
Manes.16G091500 Manihot esculenta HOM05D001739 ORTHO05D004575 3.8e-29 133.7 486 24.7
Lj7C690T11 Lonicera japonica HOM05D001739 ORTHO05D004575 6.4e-29 132.9 481 24.1
Medtr1g072890 Medicago truncatula HOM05D001739 ORTHO05D004575 8.4e-29 132.5 486 25.5
GSVIVG01023097001 Vitis vinifera HOM05D001739 ORTHO05D004575 8.4e-29 132.5 290 31.4
Cfa002954 Carpinus fangiana HOM05D001739 ORTHO05D004575 1.1e-28 132.1 486 24.3
ATR0681G226 Amborella trichopoda HOM05D001739 ORTHO05D004575 1.9e-28 131.3 310 31.9
SEGI_16086 Sequoiadendron giganteum HOM05D001739 ORTHO05D004575 7.1e-28 129.4 484 25.6
ClCG03G014800 Citrullus lanatus HOM05D001739 ORTHO05D004575 9.3e-28 129.0 481 24.3
MELO3C015548.2 Cucumis melo HOM05D001739 ORTHO05D004575 2.1e-27 127.9 481 24.7
COL.COLO4_21223 Corchorus olitorius HOM05D001739 ORTHO05D004575 3.5e-27 127.1 292 32.2
CsaV3_1G041350 Cucumis sativus L. HOM05D001739 ORTHO05D004575 4.6e-27 126.7 481 24.5
Cpa.g.sc32.6 Carica papaya HOM05D001739 ORTHO05D004575 7.9e-27 125.9 484 22.9
SEGI_37036 Sequoiadendron giganteum HOM05D001739 ORTHO05D004575 7.9e-27 125.9 423 26.5
Rhsim05G0003800 Rhododendron simsii HOM05D001739 ORTHO05D004575 1.0e-26 125.6 487 24.4
CDE04G0230 Ceratophyllum demersum HOM05D001739 ORTHO05D004575 1.3e-26 125.2 288 30.2
Sed0021617 Sechium edule HOM05D001739 ORTHO05D004575 1.8e-26 124.8 488 25.2
MSTRG.5982 Avicennia marina HOM05D001739 ORTHO05D004575 2.3e-26 124.4 490 23.7
Lj4g0016027 Lotus japonicus HOM05D001739 ORTHO05D004575 3.0e-26 124.0 486 25.3
vmacro17113 Vaccinium macrocarpon HOM05D001739 ORTHO05D004575 5.1e-26 123.2 486 22.4
Sc24g0001530 Simmondsia chinensis HOM05D001739 ORTHO05D004575 6.7e-26 122.9 486 22.8
Lalb_Chr13g0299281 Lupinus albus HOM05D001739 ORTHO05D004575 4.3e-25 120.2 486 25.7
Nitab4.5_0007773g0020 Nicotiana tabacum HOM05D001739 ORTHO05D004575 5.6e-25 119.8 292 28.1
PSO104G0064 Papaver somniferum HOM05D001739 ORTHO05D004575 1.3e-24 118.6 493 24.7
Prupe.7G193800 Prunus persica HOM05D001739 ORTHO05D004575 1.3e-24 118.6 486 24.3
Lalb_Chr12g0200311 Lupinus albus HOM05D001739 ORTHO05D004575 2.8e-24 117.5 483 26.1
Lsat_1_v5_gn_7_35381 Lactuca sativa HOM05D001739 ORTHO05D004575 3.7e-24 117.1 481 24.1
RcHm_v2.0_Chr2g0095731 Rosa chinensis HOM05D001739 ORTHO05D004575 3.7e-24 117.1 490 23.9
Nitab4.5_0001565g0110 Nicotiana tabacum HOM05D001739 ORTHO05D004575 4.8e-24 116.7 292 28.8
QL11p002157 Quercus lobata HOM05D001739 ORTHO05D004575 4.8e-24 116.7 493 23.1
CANSAT56G3462 Cannabis sativa HOM05D001739 ORTHO05D004575 6.2e-24 116.3 486 22.6
Sopen07g021980 Solanum pennellii HOM05D001739 ORTHO05D004575 6.2e-24 116.3 292 27.7
Ah.09g229240 Amaranthus hybridus HOM05D001739 ORTHO05D004575 8.1e-24 115.9 487 22.8
DCAR_005064 Daucus carota HOM05D001739 ORTHO05D004575 8.1e-24 115.9 290 27.9
PSO421G0331 Papaver somniferum HOM05D001739 ORTHO05D004575 8.1e-24 115.9 493 24.3
CAN.G63.12 Capsicum annuum HOM05D001739 ORTHO05D004575 1.1e-23 115.5 319 28.5
DCAR_003861 Daucus carota HOM05D001739 ORTHO05D004575 1.1e-23 115.5 290 27.9
Sp4g16630 Schrenkiella parvula HOM05D001739 ORTHO05D004575 1.4e-23 115.2 480 25.0
TPR.G34376 Trifolium pratense HOM05D001739 ORTHO05D004575 1.4e-23 115.2 317 29.7
VMungo1215G0229 Vigna mungo HOM05D001739 ORTHO05D004575 1.4e-23 115.2 490 23.7
FAN26G0091 Fragaria x ananassa HOM05D001739 ORTHO05D004575 2.4e-23 114.4 490 23.9
FAN26G1120 Fragaria x ananassa HOM05D001739 ORTHO05D004575 2.4e-23 114.4 490 23.9
Gohir.A07G016500 Gossypium hirsutum HOM05D001739 ORTHO05D004575 2.4e-23 114.4 292 29.8
Gohir.D07G016300 Gossypium hirsutum HOM05D001739 ORTHO05D004575 2.4e-23 114.4 292 30.1
Gorai.001G017100 Gossypium raimondii HOM05D001739 ORTHO05D004575 2.4e-23 114.4 292 30.1
Thecc.09G071800 Theobroma cacao HOM05D001739 ORTHO05D004575 2.4e-23 114.4 292 31.5
Medtr1g072970 Medicago truncatula HOM05D001739 ORTHO05D004575 3.1e-23 114.0 496 23.8
Glyma.17G046900 Glycine max HOM05D001739 ORTHO05D004575 4.0e-23 113.6 492 24.0
CDE12G0742 Ceratophyllum demersum HOM05D001739 ORTHO05D004575 5.3e-23 113.2 219 32.4
AL4G30320 Arabidopsis lyrata HOM05D001739 ORTHO05D004575 9.0e-23 112.5 289 28.0
FAN23G1590 Fragaria x ananassa HOM05D001739 ORTHO05D004575 9.0e-23 112.5 490 23.9
MD02G1099100 Malus domestica HOM05D001739 ORTHO05D004575 9.0e-23 112.5 290 28.6
THA.LOC104809049 Tarenaya hassleriana HOM05D001739 ORTHO05D004575 9.0e-23 112.5 480 23.1
Cc06_g12580 Coffea canephora HOM05D001739 ORTHO05D004575 1.2e-22 112.1 316 26.9
Prupe.6G204500 Prunus persica HOM05D001739 ORTHO05D004575 1.2e-22 112.1 486 23.7
EL10Ac8g19018 Beta vulgaris HOM05D001739 ORTHO05D004575 1.5e-22 111.7 489 22.3
BcaC02g11500 Brassica carinata HOM05D001739 ORTHO05D004575 1.5e-22 111.7 472 22.9
CDE12G0121 Ceratophyllum demersum HOM05D001739 ORTHO05D004575 1.5e-22 111.7 445 24.0
Duzib168G0208 Durio zibethinus HOM05D001739 ORTHO05D004575 1.5e-22 111.7 294 29.6
Phvul.003G128600 Phaseolus vulgaris HOM05D001739 ORTHO05D004575 1.5e-22 111.7 490 23.5
Carub.0004s1602 Capsella rubella HOM05D001739 ORTHO05D004575 2.0e-22 111.3 289 28.4
FAN19G0975 Fragaria x ananassa HOM05D001739 ORTHO05D004575 2.6e-22 110.9 490 23.5
Glyma.13G112900 Glycine max HOM05D001739 ORTHO05D004575 2.6e-22 110.9 490 23.3
MD15G1221900 Malus domestica HOM05D001739 ORTHO05D004575 2.6e-22 110.9 290 28.6
Psat6g134600 Pisum sativum HOM05D001739 ORTHO05D004575 2.6e-22 110.9 495 24.0
FvH4_1g09210 Fragaria vesca HOM05D001739 ORTHO05D004575 4.5e-22 110.2 490 23.3
TWI32G0648 Tripterygium wilfordii HOM05D001739 ORTHO05D004575 5.8e-22 109.8 287 28.2
AT2G34357 Arabidopsis thaliana HOM05D001739 ORTHO05D004575 1.0e-21 109.0 289 27.3
Hund23253 Selenicereus undatus HOM05D001739 ORTHO05D004575 1.0e-21 109.0 486 23.5
arahy.Tifrunner.gnm1.ann1.9HZQ4R Arachis hypogaea HOM05D001739 ORTHO05D004575 1.3e-21 108.6 486 23.9
BcaB01g03896 Brassica carinata HOM05D001739 ORTHO05D004575 1.7e-21 108.2 475 23.4
C04p14660 Brassica napus HOM05D001739 ORTHO05D004575 1.7e-21 108.2 472 22.0
BolC4t23047H Brassica oleracea HOM05D001739 ORTHO05D004575 1.7e-21 108.2 472 22.0
TPR.G18558 Trifolium pratense HOM05D001739 ORTHO05D004575 2.2e-21 107.8 317 28.7
HPP92_004359 Vanilla planifolia HOM05D001739 ORTHO05D004575 2.2e-21 107.8 485 22.9
BcaC02g11606 Brassica carinata HOM05D001739 ORTHO05D004575 2.9e-21 107.5 464 23.1
C04p13350 Brassica napus HOM05D001739 ORTHO05D004575 2.9e-21 107.5 464 23.1
Psat7g002920 Pisum sativum HOM05D001739 ORTHO05D004575 2.9e-21 107.5 482 23.4
BraA05t20081Z Brassica rapa HOM05D001739 ORTHO05D004575 3.8e-21 107.1 472 21.8
HanXRQChr09g0273551 Helianthus annuus HOM05D001739 ORTHO05D004575 3.8e-21 107.1 281 28.1
Sed0004150 Sechium edule HOM05D001739 ORTHO05D004575 3.8e-21 107.1 487 23.8
ECA240G3214 Erigeron canadensis HOM05D001739 ORTHO05D004575 6.5e-21 106.3 312 28.5
HanXRQChr04g0122371 Helianthus annuus HOM05D001739 ORTHO05D004575 8.4e-21 105.9 288 28.8
arahy.Tifrunner.gnm1.ann1.SDZ4E8 Arachis hypogaea HOM05D001739 ORTHO05D004575 1.1e-20 105.5 486 23.9
C03p22320 Brassica napus HOM05D001739 ORTHO05D004575 1.1e-20 105.5 297 26.3
BcaC01g05798 Brassica carinata HOM05D001739 ORTHO05D004575 1.4e-20 105.1 297 26.3
BolC3t14614H Brassica oleracea HOM05D001739 ORTHO05D004575 1.9e-20 104.8 297 26.3
Haze_26051 Corylus avellana HOM05D001739 ORTHO05D004575 2.5e-20 104.4 461 23.0
unitig_744.g24652 Utricularia gibba HOM05D001739 ORTHO05D004575 3.2e-20 104.0 482 23.9
A03p19100 Brassica napus HOM05D001739 ORTHO05D004575 4.2e-20 103.6 297 25.9
Thhalv10016153m.g Eutrema salsugineum HOM05D001739 ORTHO05D004575 4.2e-20 103.6 292 27.4
A05p11320 Brassica napus HOM05D001739 ORTHO05D004575 5.5e-20 103.2 472 22.0
BcaB02g09558 Brassica carinata HOM05D001739 ORTHO05D004575 9.3e-20 102.4 289 26.0
CARHR128440 Cardamine hirsuta HOM05D001739 ORTHO05D004575 3.5e-19 100.5 308 27.3
FAN28G0236 Fragaria x ananassa HOM05D001739 ORTHO05D004575 4.6e-19 100.1 521 22.3
Zm00001eb257110 Zea mays HOM05D001739 ORTHO05D004575 6.0e-19 99.8 405 24.0
AUR62028280 Chenopodium quinoa HOM05D001739 ORTHO05D004575 1.8e-18 98.2 297 25.3
SHI02768 Sapria himalayana HOM05D001739 ORTHO05D004575 1.8e-18 98.2 295 27.1
arahy.Tifrunner.gnm1.ann1.7457H2 Arachis hypogaea HOM05D001739 ORTHO05D004575 2.3e-18 97.8 486 23.0
arahy.Tifrunner.gnm1.ann1.WW7XLJ Arachis hypogaea HOM05D001739 ORTHO05D004575 3.0e-18 97.4 486 23.7
AUR62019633 Chenopodium quinoa HOM05D001739 ORTHO05D004575 8.7e-18 95.9 296 25.3
AUR62039592 Chenopodium quinoa HOM05D001739 ORTHO05D004575 1.1e-17 95.5 296 25.3
Aa31LG9G14080 Aethionema arabicum HOM05D001739 ORTHO05D004575 1.5e-17 95.1 311 26.0
Os02g0782100 Oryza sativa ssp. japonica HOM05D001739 ORTHO05D004575 9.6e-17 92.4 285 27.4
SGA_v2.0_scaffold281G46906 Striga asiatica HOM05D001739 ORTHO05D004575 9.6e-17 92.4 446 23.8
Prupe.7G186700 Prunus persica HOM05D001739 ORTHO05D004575 2.6e-14 84.3 251 27.1
CBR_g11186 Chara braunii HOM05D001739 ORTHO05D004575 1.0e-13 82.4 297 26.3
Sc18g0003470 Simmondsia chinensis HOM05D001739 ORTHO05D004575 3.8e-13 80.5 236 25.8
Eucgr.C00777 Eucalyptus grandis HOM05D001739 ORTHO05D004575 2.5e-12 77.8 111 34.2
FAN28G1182 Fragaria x ananassa HOM05D001739 ORTHO05D004575 4.2e-12 77.0 111 36.0
TPR.G13945 Trifolium pratense HOM05D001739 ORTHO05D004575 9.3e-12 75.9 280 25.0
CAN.G333.15 Capsicum annuum HOM05D001739 ORTHO05D004575 1.8e-10 71.6 218 28.9
FvH4_1g13610 Fragaria vesca HOM05D001739 ORTHO05D004575 6.7e-10 69.7 112 32.1
FAN19G0770 Fragaria x ananassa HOM05D001739 ORTHO05D004575 6.7e-10 69.7 112 32.1
FvH4_1g13570 Fragaria vesca HOM05D001739 ORTHO05D004575 1.1e-09 68.9 112 32.1
ATR0730G042 Amborella trichopoda HOM05D001739 ORTHO05D006605 1.9e-09 68.2 487 22.2
AUR62025277 Chenopodium quinoa HOM05D001739 ORTHO05D004575 2.5e-09 67.8 328 23.2
FAN26G0455 Fragaria x ananassa HOM05D001739 ORTHO05D004575 5.7e-09 66.6 112 30.4
Lsat_1_v5_gn_9_30560 Lactuca sativa HOM05D001739 ORTHO05D006605 7.4e-09 66.2 488 21.1
TAR623G1060 Trochodendron aralioides HOM05D001739 ORTHO05D006605 4.8e-08 63.5 106 38.7
Lalb_Chr21g0316501 Lupinus albus HOM05D001739 ORTHO05D006605 1.4e-07 62.0 121 35.5
Lj5g0016851 Lotus japonicus HOM05D001739 ORTHO05D006605 3.1e-07 60.8 108 36.1
MD12G1075000 Malus domestica HOM05D001739 ORTHO05D006605 4.1e-07 60.5 98 40.8
HPP92_012087 Vanilla planifolia HOM05D001739 ORTHO05D006605 5.3e-07 60.1 301 23.3
Lju124C42G12 Lonicera japonica HOM05D001739 ORTHO05D006605 6.9e-07 59.7 498 19.9
Cpa.g.sc33.205 Carica papaya HOM05D001739 ORTHO05D006605 1.2e-06 58.9 295 24.4
ClCG10G015770 Citrullus lanatus HOM05D001739 ORTHO05D006605 1.5e-06 58.5 81 42.0
HanXRQChr10g0296671 Helianthus annuus HOM05D001739 ORTHO05D006605 1.5e-06 58.5 108 35.2
Thecc.05G152600 Theobroma cacao HOM05D001739 ORTHO05D006605 2.0e-06 58.2 488 20.7
Phvul.007G252200 Phaseolus vulgaris HOM05D001739 ORTHO05D006605 2.6e-06 57.8 97 39.2
CSS0037723 Camellia sinensis var. sinensis HOM05D001739 ORTHO05D006605 3.4e-06 57.4 99 36.4
Glyma.02G184900 Glycine max HOM05D001739 ORTHO05D006605 3.4e-06 57.4 107 36.4
Nn7g36309 Nelumbo nucifera HOM05D001739 ORTHO05D006605 3.4e-06 57.4 102 37.3
VMungo0720G0235 Vigna mungo HOM05D001739 ORTHO05D006605 3.4e-06 57.4 97 38.1
CANSAT80G2527 Cannabis sativa HOM05D001739 ORTHO05D006605 4.5e-06 57.0 108 37.0
Manes.09G020800 Manihot esculenta HOM05D001739 ORTHO05D006605 4.5e-06 57.0 308 22.4
Prupe.7G058600 Prunus persica HOM05D001739 ORTHO05D006605 4.5e-06 57.0 102 38.2
TWI74G0913 Tripterygium wilfordii HOM05D001739 ORTHO05D006605 4.5e-06 57.0 312 22.1
Gohir.A11G312800 Gossypium hirsutum HOM05D001739 ORTHO05D006605 7.7e-06 56.2 126 33.3


User provided reference genes

Program Settings