Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c1_3670 Physcomitrium patens HOM05D003942 ORTHO05D004527 8.2e-202 706.8 354 100.0
Pp3c11_9440 Physcomitrium patens HOM05D003942 ORTHO05D004527 8.3e-154 547.4 354 75.7
Pp3c1_34600 Physcomitrium patens HOM05D003942 ORTHO05D004527 6.8e-140 501.1 360 68.1
Pp3c1_34560 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.3e-135 486.9 356 66.6
Pp3c6_24250 Physcomitrium patens HOM05D003942 ORTHO05D004527 4.6e-112 408.7 312 64.1
Pp3c14_6660 Physcomitrium patens HOM05D003942 ORTHO05D004527 6.1e-96 355.1 267 62.5
AagrBONN_evm.TU.Sc2ySwM_344.3805 Anthoceros agrestis HOM05D003942 ORTHO05D004527 7.0e-84 315.1 304 51.6
AagrBONN_evm.TU.Sc2ySwM_362.1957 Anthoceros agrestis HOM05D003942 ORTHO05D004527 7.0e-84 315.1 280 55.4
Mapoly0009s0131 Marchantia polymorpha HOM05D003942 ORTHO05D004527 7.0e-84 315.1 305 50.5
AagrBONN_evm.TU.Sc2ySwM_228.958 Anthoceros agrestis HOM05D003942 ORTHO05D004527 9.1e-84 314.7 300 53.7
Pp3c2_13700 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.0e-74 284.6 304 48.7
CBR_g44610 Chara braunii HOM05D000505 ORTHO05D000301 1.4e-71 274.2 308 45.8
AUR62022550 Chenopodium quinoa HOM05D003942 ORTHO05D004527 1.8e-71 273.9 302 45.7
AUR62004344 Chenopodium quinoa HOM05D003942 ORTHO05D004527 2.3e-71 273.5 305 45.2
Pp3c4_15850 Physcomitrium patens HOM05D003942 ORTHO05D004527 4.4e-70 269.2 287 47.0
Dinv32469 Davidia involucrata HOM05D003942 ORTHO05D004527 1.4e-68 264.2 312 42.9
Pp3c3_22870 Physcomitrium patens HOM05D003942 ORTHO05D004527 4.1e-68 262.7 334 41.0
Mapoly0071s0037 Marchantia polymorpha HOM05D003942 ORTHO05D004527 7.0e-68 261.9 321 43.6
CANSAT56G2580 Cannabis sativa HOM05D003942 ORTHO05D004527 2.0e-67 260.4 293 44.7
SMO364G0338 Selaginella moellendorffii HOM05D003942 ORTHO05D004527 2.0e-67 260.4 286 46.2
Prupe.2G168100 Prunus persica HOM05D003942 ORTHO05D004527 2.7e-67 260.0 301 42.5
SalBow5G2271 Salvia bowleyana HOM05D003942 ORTHO05D004527 3.5e-67 259.6 285 44.2
QL08p049021 Quercus lobata HOM05D003942 ORTHO05D004527 1.0e-66 258.1 285 45.3
MD01G1057600 Malus domestica HOM05D003942 ORTHO05D004527 1.3e-66 257.7 290 44.5
PGR042G2566 Punica granatum HOM05D003942 ORTHO05D004527 2.9e-66 256.5 287 43.9
Duzib133G0298 Durio zibethinus HOM05D003942 ORTHO05D004527 5.0e-66 255.8 312 42.3
Ah.05g180690 Amaranthus hybridus HOM05D003942 ORTHO05D004527 6.5e-66 255.4 282 44.7
RcHm_v2.0_Chr1g0355071 Rosa chinensis HOM05D003942 ORTHO05D004527 6.5e-66 255.4 287 43.9
Sabra14G0060100 Salix brachista HOM05D003942 ORTHO05D004527 6.5e-66 255.4 292 42.8
TWI59G0555 Tripterygium wilfordii HOM05D003942 ORTHO05D004527 6.5e-66 255.4 285 44.6
TAR629G1832 Trochodendron aralioides HOM05D003942 ORTHO05D004527 6.5e-66 255.4 314 41.7
MD07G1139000 Malus domestica HOM05D003942 ORTHO05D004527 8.5e-66 255.0 291 45.0
Potri.014G082900 Populus trichocarpa HOM05D003942 ORTHO05D004527 8.5e-66 255.0 285 43.9
TWI23G1005 Tripterygium wilfordii HOM05D003942 ORTHO05D004527 8.5e-66 255.0 285 44.9
COL.COLO4_12700 Corchorus olitorius HOM05D003942 ORTHO05D004527 1.1e-65 254.6 289 45.0
Thecc.01G360500 Theobroma cacao HOM05D003942 ORTHO05D004527 1.1e-65 254.6 323 41.5
GSVIVG01026895001 Vitis vinifera HOM05D003942 ORTHO05D004527 1.1e-65 254.6 285 43.9
Rhsim07G0016400 Rhododendron simsii HOM05D003942 ORTHO05D004527 1.9e-65 253.8 293 43.7
Oeu020562.1 Olea europaea HOM05D003942 ORTHO05D004527 2.5e-65 253.4 285 43.9
Actinidia10022 Actinidia chinensis HOM05D003942 ORTHO05D004527 3.2e-65 253.1 285 42.8
Eucgr.E00157 Eucalyptus grandis HOM05D003942 ORTHO05D004527 3.2e-65 253.1 285 44.6
CSS0049620 Camellia sinensis var. sinensis HOM05D003942 ORTHO05D004527 4.2e-65 252.7 282 44.7
Gohir.A11G088200 Gossypium hirsutum HOM05D003942 ORTHO05D004527 4.2e-65 252.7 309 42.1
Migut.N01440 Erythranthe guttata HOM05D003942 ORTHO05D004527 5.5e-65 252.3 304 40.5
Gorai.007G098800 Gossypium raimondii HOM05D003942 ORTHO05D004527 5.5e-65 252.3 309 42.1
Manes.05G036000 Manihot esculenta HOM05D003942 ORTHO05D004527 5.5e-65 252.3 288 44.1
CSS0041241 Camellia sinensis var. sinensis HOM05D003942 ORTHO05D004527 7.2e-65 251.9 282 44.7
FAN10G4090 Fragaria x ananassa HOM05D003942 ORTHO05D004527 7.2e-65 251.9 287 43.6
MBI18_g25515_MAGBIO Magnolia biondii HOM05D003942 ORTHO05D004527 7.2e-65 251.9 301 43.5
unitig_8.g3394 Utricularia gibba HOM05D003942 ORTHO05D004527 7.2e-65 251.9 294 42.9
ECA240G2096 Erigeron canadensis HOM05D003942 ORTHO05D004527 9.4e-65 251.5 282 44.3
Cfa003938 Carpinus fangiana HOM05D003942 ORTHO05D004527 1.6e-64 250.8 322 41.0
FAN06G3470 Fragaria x ananassa HOM05D003942 ORTHO05D004527 1.6e-64 250.8 287 43.2
HanXRQChr16g0522811 Helianthus annuus HOM05D003942 ORTHO05D004527 1.6e-64 250.8 282 45.7
FAN03G2475 Fragaria x ananassa HOM05D003942 ORTHO05D004527 2.1e-64 250.4 287 43.9
FvH4_7g14170 Fragaria vesca HOM05D003942 ORTHO05D004527 2.7e-64 250.0 287 43.2
Peaxi162Scf00191g01422 Petunia axillaris HOM05D003942 ORTHO05D004527 2.7e-64 250.0 285 42.8
FAN01G0250 Fragaria x ananassa HOM05D003942 ORTHO05D004527 3.6e-64 249.6 287 43.2
CiPaw.01G059900 Carya illinoinensis HOM05D003942 ORTHO05D004527 4.7e-64 249.2 288 45.1
FAN06G2309 Fragaria x ananassa HOM05D003942 ORTHO05D004527 8.0e-64 248.4 287 42.9
HanXRQChr13g0426521 Helianthus annuus HOM05D003942 ORTHO05D004527 1.4e-63 247.7 282 45.0
TAR375G0209 Trochodendron aralioides HOM05D003942 ORTHO05D004527 1.4e-63 247.7 317 40.7
Aa31LG10G15570 Aethionema arabicum HOM05D003942 ORTHO05D004527 2.3e-63 246.9 306 41.8
Cpa.g.sc18.243 Carica papaya HOM05D003942 ORTHO05D004527 2.3e-63 246.9 288 43.8
DCAR_015969 Daucus carota HOM05D003942 ORTHO05D004527 2.3e-63 246.9 287 42.5
Lsat_1_v5_gn_4_36221 Lactuca sativa HOM05D003942 ORTHO05D004527 2.3e-63 246.9 285 43.9
Hund27285 Selenicereus undatus HOM05D003942 ORTHO05D004527 2.3e-63 246.9 308 42.2
Ciclev10020374m.g Citrus clementina HOM05D003942 ORTHO05D004527 3.0e-63 246.5 304 40.8
Lalb_Chr04g0256871 Lupinus albus HOM05D003942 ORTHO05D004527 3.0e-63 246.5 312 41.3
SGA_v2.0_scaffold43G16422 Striga asiatica HOM05D003942 ORTHO05D004527 6.8e-63 245.4 287 42.5
Cc02_g37870 Coffea canephora HOM05D003942 ORTHO05D004527 1.2e-62 244.6 285 43.5
CDE09G0298 Ceratophyllum demersum HOM05D003942 ORTHO05D004527 1.5e-62 244.2 307 40.4
Nitab4.5_0008050g0040 Nicotiana tabacum HOM05D003942 ORTHO05D004527 1.5e-62 244.2 285 42.8
Lj9A582T85 Lonicera japonica HOM05D003942 ORTHO05D004527 2.0e-62 243.8 277 41.5
Lsat_1_v5_gn_3_137060 Lactuca sativa HOM05D003942 ORTHO05D004527 2.6e-62 243.4 282 44.0
MSTRG.4859 Avicennia marina HOM05D003942 ORTHO05D004527 3.4e-62 243.0 288 41.7
CiPaw.02G030000 Carya illinoinensis HOM05D003942 ORTHO05D004527 5.7e-62 242.3 286 43.7
Nitab4.5_0001702g0090 Nicotiana tabacum HOM05D003942 ORTHO05D004527 7.5e-62 241.9 285 42.8
Atru.chr5.464 Acer truncatum HOM05D003942 ORTHO05D004527 9.8e-62 241.5 288 42.7
SEGI_25793 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 9.8e-62 241.5 327 41.0
THA.LOC104817290 Tarenaya hassleriana HOM05D003942 ORTHO05D004527 1.3e-61 241.1 291 42.3
Phvul.010G097300 Phaseolus vulgaris HOM05D003942 ORTHO05D004527 2.2e-61 240.4 312 41.0
PGSC0003DMG400021644 Solanum tuberosum HOM05D003942 ORTHO05D004527 2.2e-61 240.4 285 43.2
TPR.G15979 Trifolium pratense HOM05D003942 ORTHO05D004527 2.8e-61 240.0 312 40.7
VMungo0331G0006 Vigna mungo HOM05D003942 ORTHO05D004527 6.3e-61 238.8 311 41.5
A09p53400 Brassica napus HOM05D003942 ORTHO05D004527 8.3e-61 238.4 324 38.9
C08p36210 Brassica napus HOM05D003942 ORTHO05D004527 8.3e-61 238.4 324 39.2
BolC8t51203H Brassica oleracea HOM05D003942 ORTHO05D004527 8.3e-61 238.4 324 39.2
BraA04t18872Z Brassica rapa HOM05D003942 ORTHO05D004527 8.3e-61 238.4 307 39.7
Lj3g0006137 Lotus japonicus HOM05D003942 ORTHO05D004527 1.1e-60 238.0 293 41.3
SEGI_35716 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 1.1e-60 238.0 286 43.4
AL5G43590 Arabidopsis lyrata HOM05D003942 ORTHO05D004527 1.4e-60 237.7 305 40.3
C04p71910 Brassica napus HOM05D003942 ORTHO05D004527 1.4e-60 237.7 307 39.7
BraA09t40766Z Brassica rapa HOM05D003942 ORTHO05D004527 1.4e-60 237.7 324 39.2
Ca_23643_v3 Cicer arietinum L. HOM05D003942 ORTHO05D004527 1.4e-60 237.7 295 42.4
Solyc05g049900.3 Solanum lycopersicum HOM05D003942 ORTHO05D004527 1.4e-60 237.7 285 42.5
Sopen05g028240 Solanum pennellii HOM05D003942 ORTHO05D004527 1.4e-60 237.7 285 42.5
BolC4t28689H Brassica oleracea HOM05D003942 ORTHO05D004527 1.8e-60 237.3 307 40.1
Carub.0005s2799 Capsella rubella HOM05D003942 ORTHO05D004527 1.8e-60 237.3 305 40.3
CAN.G399.13 Capsicum annuum HOM05D003942 ORTHO05D004527 1.8e-60 237.3 319 39.5
Lalb_Chr03g0038211 Lupinus albus HOM05D003942 ORTHO05D004527 3.1e-60 236.5 293 41.0
Sp5g02060 Schrenkiella parvula HOM05D003942 ORTHO05D004527 4.1e-60 236.1 291 41.9
arahy.Tifrunner.gnm1.ann1.2H0UDK Arachis hypogaea HOM05D003942 ORTHO05D004527 7.0e-60 235.3 294 42.5
Glyma.07G071900 Glycine max HOM05D003942 ORTHO05D004527 7.0e-60 235.3 287 43.2
Psat4g154400 Pisum sativum HOM05D003942 ORTHO05D004527 7.0e-60 235.3 314 40.1
arahy.Tifrunner.gnm1.ann1.Q5YAPI Arachis hypogaea HOM05D003942 ORTHO05D004527 9.1e-60 235.0 294 42.5
BolC4t24688H Brassica oleracea HOM05D003942 ORTHO05D004527 2.0e-59 233.8 291 41.6
EL10Ac1g00428 Beta vulgaris HOM05D003942 ORTHO05D004527 2.7e-59 233.4 275 42.5
BcaC02g07065 Brassica carinata HOM05D003942 ORTHO05D004527 2.7e-59 233.4 300 41.3
A04p01160 Brassica napus HOM05D003942 ORTHO05D004527 3.5e-59 233.0 291 41.2
A04p34110 Brassica napus HOM05D003942 ORTHO05D004527 3.5e-59 233.0 307 39.4
BraA04t15833Z Brassica rapa HOM05D003942 ORTHO05D004527 3.5e-59 233.0 291 41.2
BcaC07g40631 Brassica carinata HOM05D003942 ORTHO05D004527 4.5e-59 232.6 291 41.2
C04p31390 Brassica napus HOM05D003942 ORTHO05D004527 4.5e-59 232.6 291 41.2
Thhalv10001467m.g Eutrema salsugineum HOM05D003942 ORTHO05D004527 4.5e-59 232.6 298 40.3
Sp4g27940 Schrenkiella parvula HOM05D003942 ORTHO05D004527 7.7e-59 231.9 305 39.3
Thhalv10006010m.g Eutrema salsugineum HOM05D003942 ORTHO05D004527 1.0e-58 231.5 291 41.2
Glyma.03G010800 Glycine max HOM05D003942 ORTHO05D004527 1.0e-58 231.5 289 41.9
CARHR141140 Cardamine hirsuta HOM05D003942 ORTHO05D004527 1.3e-58 231.1 298 39.9
AL4G45080 Arabidopsis lyrata HOM05D003942 ORTHO05D004527 1.7e-58 230.7 286 41.3
Aa31LG1G27300 Aethionema arabicum HOM05D003942 ORTHO05D004527 2.3e-58 230.3 298 40.6
BcaC02g10219 Brassica carinata HOM05D003942 ORTHO05D004527 2.9e-58 229.9 291 41.6
Medtr8g031000 Medicago truncatula HOM05D003942 ORTHO05D004527 2.9e-58 229.9 314 39.5
Aqoxy5G04009 Aquilegia oxysepala HOM05D003942 ORTHO05D004527 4.2e-57 226.1 283 41.3
Carub.0004s2857 Capsella rubella HOM05D003942 ORTHO05D004527 4.2e-57 226.1 298 39.3
BcaC09g52244 Brassica carinata HOM05D003942 ORTHO05D004527 5.5e-57 225.7 291 40.2
Sc23g0002980 Simmondsia chinensis HOM05D003942 ORTHO05D004527 1.6e-56 224.2 276 42.4
CBR_g772 Chara braunii HOM05D003942 ORTHO05D004527 1.8e-55 220.7 320 41.2
Os03g0106000 Oryza sativa ssp. japonica HOM05D003942 ORTHO05D004527 3.4e-54 216.5 285 42.5
Haze_15488 Corylus avellana HOM05D003942 ORTHO05D004527 4.4e-54 216.1 322 37.9
HPP92_006558 Vanilla planifolia HOM05D003942 ORTHO05D004527 1.3e-53 214.5 306 38.2
Pp3c6_17920 Physcomitrium patens HOM05D003942 ORTHO05D004527 2.8e-53 213.4 172 61.6
AT2G45870 Arabidopsis thaliana HOM05D003942 ORTHO05D004527 3.7e-53 213.0 273 39.6
Zm00001eb000510 Zea mays HOM05D003942 ORTHO05D004527 1.8e-52 210.7 324 38.6
Cre11.g474700 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 1.3e-50 204.5 286 40.9
ECA234G1137 Erigeron canadensis HOM05D003942 ORTHO05D004527 6.6e-50 202.2 247 43.3
Cre06.g261750 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 4.3e-49 199.5 293 40.3
Cre16.g662600 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 1.0e-47 194.9 295 40.3
Cre16.g663450 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 1.5e-46 191.0 295 40.7
Cre16.g663400 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 1.7e-45 187.6 295 39.7
Cre07.g355300 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 8.6e-42 175.3 303 38.6
Pp3c3_14710 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.5e-41 174.5 148 62.2
CBR_g38187 Chara braunii HOM05D003942 ORTHO05D004527 3.3e-41 173.3 203 40.9
Cre01.g038100 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 3.6e-40 169.9 293 36.9
PRCOL_00004040 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 2.2e-37 160.6 308 35.7
PRCOL_00006054 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 3.7e-37 159.8 302 37.1
Cre06.g277650 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 8.3e-37 158.7 303 34.3
Duzib138G1448 Durio zibethinus HOM05D003942 ORTHO05D004527 1.0e-34 151.8 236 36.0
ATR0680G085 Amborella trichopoda HOM05D003942 ORTHO05D004527 1.5e-33 147.9 193 38.9
Nn1g01512 Nelumbo nucifera HOM05D003942 ORTHO05D004527 1.5e-33 147.9 227 34.4
Gohir.D11G092500 Gossypium hirsutum HOM05D003942 ORTHO05D004527 7.3e-33 145.6 200 39.5
PRCOL_00003097 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 1.6e-32 144.4 289 34.9
AagrBONN_evm.TU.Sc2ySwM_228.2628 Anthoceros agrestis HOM05D003942 ORTHO05D004527 8.1e-32 142.1 148 46.6
AT3G61320 Arabidopsis thaliana HOM05D003942 ORTHO05D004527 2.0e-30 137.5 197 38.1
Cre03.g199600 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 4.4e-30 136.3 214 41.1
Pp3c11_6680 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.2e-27 128.3 101 57.4
Oeu020563.1 Olea europaea HOM05D003942 ORTHO05D004527 3.5e-27 126.7 191 37.7
HPP92_011356 Vanilla planifolia HOM05D003942 ORTHO05D004527 7.8e-27 125.6 156 38.5
FAN10G2852 Fragaria x ananassa HOM05D003942 ORTHO05D004527 1.7e-26 124.4 164 42.7
PRCOL_00003548 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 3.0e-26 123.6 309 32.0
MCO01G232 Micromonas commoda HOM05D003942 ORTHO05D004527 1.2e-24 118.2 305 29.2
SEGI_34263 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 8.1e-24 115.5 154 44.8
CARHR171630 Cardamine hirsuta HOM05D003942 ORTHO05D004527 1.8e-23 114.4 149 43.6
PRCOL_00005764 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 8.9e-23 112.1 321 31.5
vmacro13277 Vaccinium macrocarpon HOM05D003942 ORTHO05D004527 5.8e-22 109.4 304 27.6
MCO09G357 Micromonas commoda HOM05D003942 ORTHO05D004527 1.9e-20 104.4 350 28.3
MD01G1202300 Malus domestica HOM05D003942 ORTHO05D004527 3.2e-20 103.6 196 33.2
C05p09980 Brassica napus HOM05D003942 ORTHO05D004527 5.4e-20 102.8 120 44.2
PRCOL_00004398 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 1.2e-19 101.7 301 30.2
FAN10G0144 Fragaria x ananassa HOM05D003942 ORTHO05D004527 1.3e-18 98.2 141 42.6
MCO01G007 Micromonas commoda HOM05D003942 ORTHO05D004527 3.0e-18 97.1 294 29.6
SEGI_01331 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 4.0e-15 86.7 76 46.1
HPP92_011355 Vanilla planifolia HOM05D003942 ORTHO05D004527 5.3e-15 86.3 121 41.3
FAN10G3156 Fragaria x ananassa HOM05D000449 ORTHO05D004527 6.0e-11 72.8 101 42.6
Oeu020564.1 Olea europaea HOM05D003942 ORTHO05D004527 2.5e-09 67.4 94 40.4
Pp3c20_3390 Physcomitrium patens HOM05D003942 ORTHO05D004527 2.5e-09 67.4 84 41.7
BcaB02g11262 Brassica carinata HOM05D003942 ORTHO05D004527 4.8e-08 63.2 112 28.6
PRCOL_00005847 Prasinoderma coloniale HOM05D047694 ORTHO05D049123 1.1e-07 62.0 323 24.1
MCO08G244 Micromonas commoda HOM05D037687 ORTHO05D049127 9.9e-06 55.5 219 26.5


User provided reference genes

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