Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c1_36430 Physcomitrium patens HOM05D003422 ORTHO05D004263 3.2e-133 478.8 310 100.0
Pp3c2_4220 Physcomitrium patens HOM05D003422 ORTHO05D004263 7.9e-108 394.4 310 77.4
Mapoly0061s0104 Marchantia polymorpha HOM05D003422 ORTHO05D004263 7.0e-80 301.6 315 59.7
SEGI_07600 Sequoiadendron giganteum HOM05D003422 ORTHO05D004263 7.0e-72 275.0 313 50.8
Sed0026406 Sechium edule HOM05D003422 ORTHO05D004263 4.8e-65 252.3 307 49.5
CBR_g32274 Chara braunii HOM05D003422 ORTHO05D004263 6.3e-65 251.9 341 51.9
TAR622G0502 Trochodendron aralioides HOM05D003422 ORTHO05D004263 2.0e-63 246.9 308 49.0
Hma1.2p1_3343F.1_g335440 Hydrangea macrophylla HOM05D003422 ORTHO05D004263 3.5e-63 246.1 301 50.2
arahy.Tifrunner.gnm1.ann1.G4VR7T Arachis hypogaea HOM05D003422 ORTHO05D004263 1.3e-62 244.2 311 49.8
CSS0036067 Camellia sinensis var. sinensis HOM05D003422 ORTHO05D004263 1.7e-62 243.8 306 50.3
ClCG07G015410 Citrullus lanatus HOM05D003422 ORTHO05D004263 3.8e-62 242.7 200 59.5
MELO3C017744.2 Cucumis melo HOM05D003422 ORTHO05D004263 3.8e-62 242.7 200 59.5
arahy.Tifrunner.gnm1.ann1.I3QT17 Arachis hypogaea HOM05D003422 ORTHO05D004263 6.5e-62 241.9 313 50.5
Solyc01g005810.3 Solanum lycopersicum HOM05D003422 ORTHO05D004263 6.5e-62 241.9 217 57.1
CsaV3_4G003000 Cucumis sativus L. HOM05D003422 ORTHO05D004263 8.6e-62 241.5 200 59.0
Manes.13G024200 Manihot esculenta HOM05D003422 ORTHO05D004263 8.6e-62 241.5 310 47.7
MD03G1198200 Malus domestica HOM05D003422 ORTHO05D004263 1.1e-61 241.1 300 49.3
Peaxi162Scf00128g00219 Petunia axillaris HOM05D003422 ORTHO05D004263 1.5e-61 240.7 245 53.5
Sed0010066 Sechium edule HOM05D003422 ORTHO05D004263 1.5e-61 240.7 251 55.0
Sopen01g001810 Solanum pennellii HOM05D003422 ORTHO05D004263 1.5e-61 240.7 217 56.7
PGSC0003DMG400032131 Solanum tuberosum HOM05D003422 ORTHO05D004263 1.5e-61 240.7 217 56.2
Nitab4.5_0001565g0060 Nicotiana tabacum HOM05D003422 ORTHO05D004263 1.9e-61 240.4 303 48.8
GSVIVG01021879001 Vitis vinifera HOM05D003422 ORTHO05D004263 1.9e-61 240.4 304 48.4
GSVIVG01007655001 Vitis vinifera HOM05D003422 ORTHO05D004263 2.5e-61 240.0 304 48.0
ATR0824G091 Amborella trichopoda HOM05D003422 ORTHO05D004263 3.3e-61 239.6 308 51.9
Nn8g39875 Nelumbo nucifera HOM05D003422 ORTHO05D004263 3.3e-61 239.6 300 47.0
Nitab4.5_0009109g0040 Nicotiana tabacum HOM05D003422 ORTHO05D004263 4.2e-61 239.2 303 48.8
PGR102G0689 Punica granatum HOM05D003422 ORTHO05D004263 4.2e-61 239.2 200 59.0
Atru.chr3.1581 Acer truncatum HOM05D003422 ORTHO05D004263 5.5e-61 238.8 251 53.0
CANSAT64G0467 Cannabis sativa HOM05D003422 ORTHO05D004263 5.5e-61 238.8 301 49.5
Actinidia15098 Actinidia chinensis HOM05D003422 ORTHO05D004263 7.2e-61 238.4 192 62.0
Dinv15231 Davidia involucrata HOM05D003422 ORTHO05D004263 9.5e-61 238.0 312 48.7
Nitab4.5_0016963g0010 Nicotiana tabacum HOM05D003422 ORTHO05D004263 1.6e-60 237.3 308 46.8
HPP92_014432 Vanilla planifolia HOM05D003422 ORTHO05D004263 2.8e-60 236.5 237 51.9
MD11G1214400 Malus domestica HOM05D003422 ORTHO05D004263 3.6e-60 236.1 301 48.2
Phvul.011G000100 Phaseolus vulgaris HOM05D003422 ORTHO05D004263 4.7e-60 235.7 307 48.9
VMungo1127G0899 Vigna mungo HOM05D003422 ORTHO05D004263 4.7e-60 235.7 202 58.4
RcHm_v2.0_Chr7g0190541 Rosa chinensis HOM05D003422 ORTHO05D004263 6.1e-60 235.3 307 48.2
SMO331G0073 Selaginella moellendorffii HOM05D003422 ORTHO05D004263 6.1e-60 235.3 267 52.1
Sc14g0008740 Simmondsia chinensis HOM05D003422 ORTHO05D004263 1.4e-59 234.2 316 47.8
Cc11_g15770 Coffea canephora HOM05D003422 ORTHO05D004263 2.3e-59 233.4 308 48.7
QL03p058012 Quercus lobata HOM05D003422 ORTHO05D004263 2.3e-59 233.4 307 46.9
TPR.G28314 Trifolium pratense HOM05D003422 ORTHO05D004263 2.3e-59 233.4 310 45.2
vmacro17129 Vaccinium macrocarpon HOM05D003422 ORTHO05D004263 2.3e-59 233.4 259 59.5
Atru.chr2.1587 Acer truncatum HOM05D003422 ORTHO05D004263 4.0e-59 232.6 312 46.2
Nn8g40815 Nelumbo nucifera HOM05D003422 ORTHO05D004263 4.0e-59 232.6 305 47.5
RcHm_v2.0_Chr4g0433011 Rosa chinensis HOM05D003422 ORTHO05D004263 4.0e-59 232.6 311 46.0
Dinv38208 Davidia involucrata HOM05D003422 ORTHO05D004263 5.2e-59 232.3 200 58.0
Nn2g13933 Nelumbo nucifera HOM05D003422 ORTHO05D004263 8.9e-59 231.5 220 55.0
TWI39G0719 Tripterygium wilfordii HOM05D003422 ORTHO05D004263 8.9e-59 231.5 299 45.2
BcaC08g45809 Brassica carinata HOM05D003422 ORTHO05D004263 1.5e-58 230.7 200 57.0
C06p36020 Brassica napus HOM05D003422 ORTHO05D004263 1.5e-58 230.7 200 57.0
BolC6t38723H Brassica oleracea HOM05D003422 ORTHO05D004263 1.5e-58 230.7 200 57.0
BcaB05g24600 Brassica carinata HOM05D003422 ORTHO05D004263 2.0e-58 230.3 200 56.5
Sp5g25830 Schrenkiella parvula HOM05D003422 ORTHO05D004263 2.0e-58 230.3 193 58.0
TAR374G1409 Trochodendron aralioides HOM05D003422 ORTHO05D004263 2.0e-58 230.3 309 46.0
A07p31020 Brassica napus HOM05D003422 ORTHO05D004263 2.6e-58 229.9 200 57.0
BcaB03g15550 Brassica carinata HOM05D003422 ORTHO05D004263 3.4e-58 229.6 200 56.5
Aqoxy5G03760 Aquilegia oxysepala HOM05D003422 ORTHO05D004263 5.7e-58 228.8 200 57.0
BcaC03g15214 Brassica carinata HOM05D003422 ORTHO05D004263 5.7e-58 228.8 200 56.5
C02p28010 Brassica napus HOM05D003422 ORTHO05D004263 5.7e-58 228.8 200 56.5
BolC2t08844H Brassica oleracea HOM05D003422 ORTHO05D004263 5.7e-58 228.8 200 56.5
QL03p061510 Quercus lobata HOM05D003422 ORTHO05D004263 7.5e-58 228.4 308 46.4
CiPaw.05G181800 Carya illinoinensis HOM05D003422 ORTHO05D004263 9.8e-58 228.0 311 44.7
Phvul.010G035100 Phaseolus vulgaris HOM05D003422 ORTHO05D004263 1.3e-57 227.6 307 47.9
Eucgr.B00992 Eucalyptus grandis HOM05D003422 ORTHO05D004263 1.7e-57 227.3 307 47.6
Prupe.1G244800 Prunus persica HOM05D003422 ORTHO05D004263 1.7e-57 227.3 306 47.7
Prupe.8G016700 Prunus persica HOM05D003422 ORTHO05D004263 2.8e-57 226.5 312 47.1
BraA02t06729Z Brassica rapa HOM05D003422 ORTHO05D004263 3.7e-57 226.1 200 56.0
THA.LOC104822989 Tarenaya hassleriana HOM05D003422 ORTHO05D004263 3.7e-57 226.1 193 58.0
EL10Ac6g13812 Beta vulgaris HOM05D003422 ORTHO05D004263 4.9e-57 225.7 308 54.5
Aa31LG7G7310 Aethionema arabicum HOM05D003422 ORTHO05D004263 6.3e-57 225.3 198 56.6
Cpa.g.sc33.23 Carica papaya HOM05D003422 ORTHO05D004263 8.3e-57 224.9 192 57.3
CiPaw.05G159400 Carya illinoinensis HOM05D003422 ORTHO05D004263 1.1e-56 224.6 301 44.9
TWI23G0208 Tripterygium wilfordii HOM05D003422 ORTHO05D004263 1.8e-56 223.8 307 43.6
Oeu041425.1 Olea europaea HOM05D003422 ORTHO05D004263 3.1e-56 223.0 308 43.8
A02p16750 Brassica napus HOM05D003422 ORTHO05D004263 4.1e-56 222.6 200 55.5
Cre02.g145231 Chlamydomonas reinhardtii HOM05D003422 ORTHO05D004263 5.4e-56 222.2 200 54.5
Ciclev10032237m.g Citrus clementina HOM05D003422 ORTHO05D004263 5.4e-56 222.2 300 44.0
Psat7g167080 Pisum sativum HOM05D003422 ORTHO05D004263 7.0e-56 221.9 307 43.0
Carub.0001s2287 Capsella rubella HOM05D003422 ORTHO05D004263 9.2e-56 221.5 302 49.0
CAN.G158.25 Capsicum annuum HOM05D003422 ORTHO05D004263 1.2e-55 221.1 303 46.2
TPR.G37166 Trifolium pratense HOM05D003422 ORTHO05D004263 1.2e-55 221.1 327 45.3
FAN06G1621 Fragaria x ananassa HOM05D003422 ORTHO05D004263 2.0e-55 220.3 200 55.0
CARHR023720 Cardamine hirsuta HOM05D003422 ORTHO05D004263 2.7e-55 219.9 192 56.2
Glyma.12G119800 Glycine max HOM05D003422 ORTHO05D004263 2.7e-55 219.9 307 46.9
Glyma.06G286100 Glycine max HOM05D003422 ORTHO05D004263 4.5e-55 219.2 308 47.1
Haze_08919 Corylus avellana HOM05D003422 ORTHO05D004263 2.3e-54 216.9 308 43.2
PSO017G5618 Papaver somniferum HOM05D003422 ORTHO05D004263 2.9e-54 216.5 306 44.8
Cfa012129 Carpinus fangiana HOM05D003422 ORTHO05D004263 6.6e-54 215.3 308 43.2
AUR62003555 Chenopodium quinoa HOM05D003422 ORTHO05D004263 6.6e-54 215.3 311 50.2
FAN22G1899 Fragaria x ananassa HOM05D003422 ORTHO05D004263 6.6e-54 215.3 306 44.8
HanXRQChr06g0172831 Helianthus annuus HOM05D003422 ORTHO05D004263 6.6e-54 215.3 303 45.9
AUR62017869 Chenopodium quinoa HOM05D003422 ORTHO05D004263 8.6e-54 214.9 311 50.5
Migut.E00204 Erythranthe guttata HOM05D003422 ORTHO05D004263 8.6e-54 214.9 199 55.8
FAN07G0682 Fragaria x ananassa HOM05D003422 ORTHO05D004263 8.6e-54 214.9 307 41.7
Haze_12250 Corylus avellana HOM05D003422 ORTHO05D004263 1.1e-53 214.5 311 42.4
PSO478G1628 Papaver somniferum HOM05D003422 ORTHO05D004263 1.5e-53 214.2 200 52.5
arahy.Tifrunner.gnm1.ann1.FFB06F Arachis hypogaea HOM05D003422 ORTHO05D004263 1.9e-53 213.8 297 47.1
Eucgr.K01009 Eucalyptus grandis HOM05D003422 ORTHO05D004263 1.9e-53 213.8 307 45.3
Thhalv10008312m.g Eutrema salsugineum HOM05D003422 ORTHO05D004263 5.6e-53 212.2 299 48.2
Hund06028 Selenicereus undatus HOM05D003422 ORTHO05D004263 5.6e-53 212.2 307 44.6
AL1G31870 Arabidopsis lyrata HOM05D003422 ORTHO05D004263 9.5e-53 211.5 247 49.4
Cfa009213 Carpinus fangiana HOM05D003422 ORTHO05D004263 9.5e-53 211.5 308 41.9
Lsat_1_v5_gn_8_152261 Lactuca sativa HOM05D003422 ORTHO05D004263 9.5e-53 211.5 246 48.4
AT1G23280 Arabidopsis thaliana HOM05D003422 ORTHO05D004263 2.1e-52 210.3 251 51.0
PSO017G4826 Papaver somniferum HOM05D003422 ORTHO05D004263 8.0e-52 208.4 315 45.4
PRCOL_00004566 Prasinoderma coloniale HOM05D003422 ORTHO05D004263 8.0e-52 208.4 194 54.6
vmacro16194 Vaccinium macrocarpon HOM05D003422 ORTHO05D004263 1.0e-51 208.0 195 55.9
Os07g0270900 Oryza sativa ssp. japonica HOM05D003422 ORTHO05D004263 1.4e-51 207.6 198 52.0
FvH4_7g31100 Fragaria vesca HOM05D003422 ORTHO05D004263 2.3e-51 206.8 193 70.5
DCAR_026512 Daucus carota HOM05D003422 ORTHO05D004263 4.0e-51 206.1 312 44.6
Rhsim02G0001300 Rhododendron simsii HOM05D003422 ORTHO05D004263 4.0e-51 206.1 225 48.4
Eucgr.K00985 Eucalyptus grandis HOM05D003422 ORTHO05D004263 6.8e-51 205.3 188 54.8
BraA03t13450Z Brassica rapa HOM05D003422 ORTHO05D004263 2.6e-50 203.4 255 49.4
Lalb_Chr10g0099861 Lupinus albus HOM05D003422 ORTHO05D004263 2.6e-50 203.4 202 52.5
Medtr4g079190 Medicago truncatula HOM05D003422 ORTHO05D004263 3.4e-50 203.0 310 43.2
Lalb_Chr04g0254851 Lupinus albus HOM05D003422 ORTHO05D004263 5.8e-50 202.2 202 52.5
FAN17G2514 Fragaria x ananassa HOM05D003422 ORTHO05D004263 7.5e-50 201.8 308 40.9
unitig_21.g20608 Utricularia gibba HOM05D003422 ORTHO05D004263 1.3e-49 201.1 217 47.9
BcaC01g03409 Brassica carinata HOM05D003422 ORTHO05D004263 6.4e-49 198.7 311 45.0
C03p52870 Brassica napus HOM05D003422 ORTHO05D004263 6.4e-49 198.7 311 45.0
BolC3t17554H Brassica oleracea HOM05D003422 ORTHO05D004263 8.3e-49 198.4 311 44.7
AL1G37060 Arabidopsis lyrata HOM05D003422 ORTHO05D004263 1.1e-48 198.0 248 50.0
Zm00001eb364260 Zea mays HOM05D003422 ORTHO05D004263 1.1e-48 198.0 198 50.0
Ca_20120_v3 Cicer arietinum L. HOM05D003422 ORTHO05D004263 1.8e-48 197.2 307 43.0
Lsat_1_v5_gn_5_166341 Lactuca sativa HOM05D003422 ORTHO05D004263 2.4e-48 196.8 243 45.7
Medtr2g103560 Medicago truncatula HOM05D003422 ORTHO05D004263 3.2e-48 196.4 338 37.6
BcaC09g49229 Brassica carinata HOM05D003422 ORTHO05D004263 5.4e-48 195.7 218 49.5
FvH4_4g25580 Fragaria vesca HOM05D003422 ORTHO05D004263 7.0e-48 195.3 310 41.3
A03p43080 Brassica napus HOM05D003422 ORTHO05D004263 9.2e-48 194.9 286 44.1
Atru.chr3.1559 Acer truncatum HOM05D003422 ORTHO05D004263 7.8e-47 191.8 287 45.3
Potri.012G085300 Populus trichocarpa HOM05D003422 ORTHO05D004263 1.0e-46 191.4 305 38.0
SpUn0343_0020 Schrenkiella parvula HOM05D003422 ORTHO05D004263 3.0e-46 189.9 281 48.0
Rhsim12G0110100 Rhododendron simsii HOM05D003422 ORTHO05D004263 6.6e-46 188.7 357 38.4
Lj1g0018398 Lotus japonicus HOM05D003422 ORTHO05D004263 4.3e-45 186.0 311 39.9
ATR0996G003 Amborella trichopoda HOM05D003422 ORTHO05D004263 9.5e-45 184.9 237 51.1
Potri.015G083700 Populus trichocarpa HOM05D003422 ORTHO05D004263 1.2e-44 184.5 305 37.7
Sabra15G0107000 Salix brachista HOM05D003422 ORTHO05D004263 1.6e-44 184.1 307 37.5
BraA01t03342Z Brassica rapa HOM05D003422 ORTHO05D004263 1.8e-43 180.6 256 44.5
CDE02G2608 Ceratophyllum demersum HOM05D003422 ORTHO05D004263 6.8e-43 178.7 236 44.5
SEGI_01875 Sequoiadendron giganteum HOM05D003422 ORTHO05D004263 6.8e-43 178.7 100 81.0
Sabra12G0061400 Salix brachista HOM05D003422 ORTHO05D004263 5.8e-42 175.6 284 38.7
A01p32170 Brassica napus HOM05D003422 ORTHO05D004263 7.5e-42 175.3 259 44.4
Duzib068G0444 Durio zibethinus HOM05D003422 ORTHO05D004263 9.8e-42 174.9 310 35.8
COL.COLO4_05559 Corchorus olitorius HOM05D003422 ORTHO05D004263 2.9e-41 173.3 306 37.6
Gohir.A12G199400 Gossypium hirsutum HOM05D003422 ORTHO05D004263 6.4e-41 172.2 306 38.9
Rhsim06G0078600 Rhododendron simsii HOM05D003422 ORTHO05D004263 1.4e-40 171.0 401 33.9
Gohir.D12G202200 Gossypium hirsutum HOM05D003422 ORTHO05D004263 1.3e-38 164.5 299 36.8
Gorai.008G217200 Gossypium raimondii HOM05D003422 ORTHO05D004263 1.7e-38 164.1 299 38.1
Thecc.03G025100 Theobroma cacao HOM05D003422 ORTHO05D004263 1.7e-38 164.1 307 37.8
CDE05G1364 Ceratophyllum demersum HOM05D003422 ORTHO05D004263 8.6e-38 161.8 100 68.0
SGA_v2.0_scaffold63G21735 Striga asiatica HOM05D003637 ORTHO05D004175 1.9e-37 160.6 196 43.9
Actinidia27808 Actinidia chinensis HOM05D003422 ORTHO05D004263 2.5e-37 160.2 253 44.7
Cfa026988 Carpinus fangiana HOM05D003422 ORTHO05D004263 2.5e-37 160.2 210 42.9
MCO01G280 Micromonas commoda HOM05D003422 ORTHO05D004263 1.2e-36 157.9 185 44.3
Actinidia01349 Actinidia chinensis HOM05D003422 ORTHO05D004263 1.8e-35 154.1 279 44.8
Nitab4.5_0000979g0040 Nicotiana tabacum HOM05D003422 ORTHO05D004263 6.8e-35 152.1 125 59.2
AagrBONN_evm.TU.Sc2ySwM_344.1527 Anthoceros agrestis HOM05D003422 ORTHO05D004263 1.5e-34 151.0 183 65.0
Eucgr.K00976 Eucalyptus grandis HOM05D003422 ORTHO05D004263 4.4e-34 149.4 246 41.1
ECA233G3049 Erigeron canadensis HOM05D003422 ORTHO05D004263 5.8e-34 149.1 301 37.9
Haze_26253 Corylus avellana HOM05D003422 ORTHO05D004263 1.5e-29 134.4 196 37.8
Prupe.8G011700 Prunus persica HOM05D003422 ORTHO05D004263 4.4e-26 122.9 242 40.1
SEGI_38458 Sequoiadendron giganteum HOM05D003422 ORTHO05D004263 2.7e-23 113.6 176 44.9
C01p41190 Brassica napus HOM05D003422 ORTHO05D004263 1.3e-22 111.3 71 66.2
BolC1t04073H Brassica oleracea HOM05D003422 ORTHO05D004263 2.3e-22 110.5 71 64.8
SGA_v2.0_scaffold87G27078 Striga asiatica HOM05D003637 ORTHO05D004175 5.2e-19 99.4 157 36.9
Os07g0271600 Oryza sativa ssp. japonica HOM05D003422 ORTHO05D004263 2.6e-18 97.1 78 59.0
Nitab4.5_0000979g0020 Nicotiana tabacum HOM05D003422 ORTHO05D004263 2.1e-15 87.4 112 50.0
Lj1A759T42 Lonicera japonica HOM05D003422 ORTHO05D004263 1.3e-14 84.7 119 46.2
FAN10G4187 Fragaria x ananassa HOM05D003422 ORTHO05D004263 8.7e-14 82.0 60 65.0
FAN06G3710 Fragaria x ananassa HOM05D003422 ORTHO05D004263 2.5e-13 80.5 46 73.9
FAN10G4221 Fragaria x ananassa HOM05D003422 ORTHO05D004263 1.3e-12 78.2 61 60.7
BolC4t24676H Brassica oleracea HOM05D003422 ORTHO05D004263 9.0e-11 72.0 73 52.1
BcaB07g33435 Brassica carinata HOM05D003422 ORTHO05D004263 7.6e-10 68.9 92 44.6
Ah.04g165080 Amaranthus hybridus HOM05D002611 ORTHO05D002822 1.3e-09 68.2 164 40.2
BcaB04g17046 Brassica carinata HOM05D003422 ORTHO05D004263 2.2e-09 67.4 86 43.0
Eucgr.B00881 Eucalyptus grandis HOM05D003422 ORTHO05D004263 3.8e-09 66.6 37 78.4
BcaB01g03637 Brassica carinata HOM05D003422 ORTHO05D004263 4.9e-09 66.2 92 44.6
vmacro17128 Vaccinium macrocarpon HOM05D003422 ORTHO05D004263 1.6e-07 61.2 94 42.6
BolC7t41374H Brassica oleracea HOM05D003422 ORTHO05D004263 7.9e-07 58.9 87 40.2


User provided reference genes

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